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Conserved domains on  [gi|1709924926|ref|WP_143276157|]
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transposase, partial [Burkholderia cenocepacia]

Protein Classification

transposase( domain architecture ID 1000886)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803|GO:0032196|GO:0003677
PubMed:  26104718|15102449|33172005

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IS5 super family cl34540
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-80 1.31e-31

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3039:

Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 111.50  E-value: 1.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709924926   1 MQRQIGFAEAESAGKKRVTKRQRFLAEMEKVVPWSRLLSVIGPYYPKGERGRPPIGLERMLRIYLLQQWYGLSDEGLEDA 80
Cdd:COG3039     1 MKQQLFAADERYAKKKKQTRPLLFLEEMIDVVPWALLLDIIEPRYPKGKGGRPPYPLERMLRILFLQQWYNLSDPAMEDA 80
 
Name Accession Description Interval E-value
IS5 COG3039
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-80 1.31e-31

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 111.50  E-value: 1.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709924926   1 MQRQIGFAEAESAGKKRVTKRQRFLAEMEKVVPWSRLLSVIGPYYPKGERGRPPIGLERMLRIYLLQQWYGLSDEGLEDA 80
Cdd:COG3039     1 MKQQLFAADERYAKKKKQTRPLLFLEEMIDVVPWALLLDIIEPRYPKGKGGRPPYPLERMLRILFLQQWYNLSDPAMEDA 80
transpos_IS5_4 NF033581
IS5 family transposase;
24-80 1.91e-20

IS5 family transposase;


Pssm-ID: 468098 [Multi-domain]  Cd Length: 284  Bit Score: 81.60  E-value: 1.91e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1709924926  24 FLAEMEKVVPWSRLLSVIGPYYPK-GERGRPPIGLERMLRIYLLQQWYGLSDEGLEDA 80
Cdd:NF033581    1 RLFRRLSGVPWETFEALIEPLYPKrAGRGRPPYPPELMLRILLLQTLYYLRDERLEEQ 58
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
 51-80 2.31e-08

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 45.95  E-value: 2.31e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1709924926 51 GRPPIGLERMLRIYLLQQWYGL-SDEGLEDA 80
Cdd:pfam05598  1 GRPAYPPEMMLKALLLQYLYGLrSDRQLEEA 31
transpos_IS5_1 NF033578
IS5 family transposase;
25-77 3.22e-05

IS5 family transposase;


Pssm-ID: 468095 [Multi-domain]  Cd Length: 415  Bit Score: 39.87  E-value: 3.22e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1709924926  25 LAEMEKVVPWSRLLSVIGPYYPKGeRGRPPIGLERMLRIYLLQQWYGLSDEGL 77
Cdd:NF033578   19 LVKLADLIPWEEFEEAYAPLFSSH-TGRPAKPTRLMVGLLILKHRYDLSDEEV 70
 
Name Accession Description Interval E-value
IS5 COG3039
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-80 1.31e-31

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 111.50  E-value: 1.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709924926   1 MQRQIGFAEAESAGKKRVTKRQRFLAEMEKVVPWSRLLSVIGPYYPKGERGRPPIGLERMLRIYLLQQWYGLSDEGLEDA 80
Cdd:COG3039     1 MKQQLFAADERYAKKKKQTRPLLFLEEMIDVVPWALLLDIIEPRYPKGKGGRPPYPLERMLRILFLQQWYNLSDPAMEDA 80
transpos_IS5_4 NF033581
IS5 family transposase;
24-80 1.91e-20

IS5 family transposase;


Pssm-ID: 468098 [Multi-domain]  Cd Length: 284  Bit Score: 81.60  E-value: 1.91e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1709924926  24 FLAEMEKVVPWSRLLSVIGPYYPK-GERGRPPIGLERMLRIYLLQQWYGLSDEGLEDA 80
Cdd:NF033581    1 RLFRRLSGVPWETFEALIEPLYPKrAGRGRPPYPPELMLRILLLQTLYYLRDERLEEQ 58
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
 51-80 2.31e-08

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 45.95  E-value: 2.31e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1709924926 51 GRPPIGLERMLRIYLLQQWYGL-SDEGLEDA 80
Cdd:pfam05598  1 GRPAYPPEMMLKALLLQYLYGLrSDRQLEEA 31
transpos_IS5_1 NF033578
IS5 family transposase;
25-77 3.22e-05

IS5 family transposase;


Pssm-ID: 468095 [Multi-domain]  Cd Length: 415  Bit Score: 39.87  E-value: 3.22e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1709924926  25 LAEMEKVVPWSRLLSVIGPYYPKGeRGRPPIGLERMLRIYLLQQWYGLSDEGL 77
Cdd:NF033578   19 LVKLADLIPWEEFEEAYAPLFSSH-TGRPAKPTRLMVGLLILKHRYDLSDEEV 70
COG3666 COG3666
Transposase, IS1182 family [Mobilome: prophages, transposons];
34-80 3.43e-05

Transposase, IS1182 family [Mobilome: prophages, transposons];


Pssm-ID: 442883 [Multi-domain]  Cd Length: 169  Bit Score: 39.49  E-value: 3.43e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1709924926  34 WSRLLSVIGPYYPKGeRGRPPIGLERMLRIYLLQQWYGL-SDEGLEDA 80
Cdd:COG3666    39 LDFILSELEKLYSAD-TGRPAYDPEMLLKLLLYGYLEGIrSSRQLEEA 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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