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Conserved domains on  [gi|1709972753|ref|WP_143323230|]
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MULTISPECIES: IS3 family transposase, partial [Corynebacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra5 super family cl34487
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
2-27 6.85e-07

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG2801:

Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 42.06  E-value: 6.85e-07
                          10        20
                  ....*....|....*....|....*.
gi 1709972753   2 WYNTERIQQRLKGLTPMQYRNQTLEA 27
Cdd:COG2801   283 FYNHERPHSSLGYLTPAEYEKQLAAA 308
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
2-27 6.85e-07

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 42.06  E-value: 6.85e-07
                          10        20
                  ....*....|....*....|....*.
gi 1709972753   2 WYNTERIQQRLKGLTPMQYRNQTLEA 27
Cdd:COG2801   283 FYNHERPHSSLGYLTPAEYEKQLAAA 308
rve_2 pfam13333
Integrase core domain;
2-25 1.06e-06

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 39.17  E-value: 1.06e-06
                         10        20
                 ....*....|....*....|....
gi 1709972753  2 WYNTeriqQRLKGLTPMQYRNQTL 25
Cdd:pfam13333 33 WYNN----KRLKGLSPVQYRNQSL 52
transpos_IS3 NF033516
IS3 family transposase;
2-21 1.81e-05

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 37.93  E-value: 1.81e-05
                          10        20
                  ....*....|....*....|
gi 1709972753   2 WYNTERIQQRLKGLTPMQYR 21
Cdd:NF033516  350 FYNHERPHSSLGYLTPAEFE 369
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
2-27 6.85e-07

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 42.06  E-value: 6.85e-07
                          10        20
                  ....*....|....*....|....*.
gi 1709972753   2 WYNTERIQQRLKGLTPMQYRNQTLEA 27
Cdd:COG2801   283 FYNHERPHSSLGYLTPAEYEKQLAAA 308
rve_2 pfam13333
Integrase core domain;
2-25 1.06e-06

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 39.17  E-value: 1.06e-06
                         10        20
                 ....*....|....*....|....
gi 1709972753  2 WYNTeriqQRLKGLTPMQYRNQTL 25
Cdd:pfam13333 33 WYNN----KRLKGLSPVQYRNQSL 52
transpos_IS3 NF033516
IS3 family transposase;
2-21 1.81e-05

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 37.93  E-value: 1.81e-05
                          10        20
                  ....*....|....*....|
gi 1709972753   2 WYNTERIQQRLKGLTPMQYR 21
Cdd:NF033516  350 FYNHERPHSSLGYLTPAEFE 369
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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