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Conserved domains on  [gi|1718115597|ref|WP_144572874|]
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DUF6985 domain-containing protein, partial [Bacillus paramycoides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2004 super family cl09654
Protein of unknown function (DUF2004); This is a family of proteins with unknown function. The ...
 1-72 6.00e-06

Protein of unknown function (DUF2004); This is a family of proteins with unknown function. The structure of one of the proteins in this family has revealed a novel alpha-beta fold.


The actual alignment was detected with superfamily member pfam09406:

Pssm-ID: 430589  Cd Length: 107  Bit Score: 40.15  E-value: 6.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1718115597   1 ILQPILNYYKQK------------RHELGYDVA---FNEDYPLIETVDQLIEHITLVGISVPYDflRDGRDVGVSFDCSW 65
Cdd:pfam09406   6 ARDALANYLGNEfkdtvtkyidfhVEELGPEILeelKEPDDLSKLTEAELLKKLQLIRIGLWPA--EDERFATFDFSIGP 83


                  ....*..
gi 1718115597  66 DEENGLG 72
Cdd:pfam09406  84 DFTDELL 90
 
Name Accession Description Interval E-value
DUF2004 pfam09406
Protein of unknown function (DUF2004); This is a family of proteins with unknown function. The ...
 1-72 6.00e-06

Protein of unknown function (DUF2004); This is a family of proteins with unknown function. The structure of one of the proteins in this family has revealed a novel alpha-beta fold.


Pssm-ID: 430589  Cd Length: 107  Bit Score: 40.15  E-value: 6.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1718115597   1 ILQPILNYYKQK------------RHELGYDVA---FNEDYPLIETVDQLIEHITLVGISVPYDflRDGRDVGVSFDCSW 65
Cdd:pfam09406   6 ARDALANYLGNEfkdtvtkyidfhVEELGPEILeelKEPDDLSKLTEAELLKKLQLIRIGLWPA--EDERFATFDFSIGP 83


                  ....*..
gi 1718115597  66 DEENGLG 72
Cdd:pfam09406  84 DFTDELL 90
 
Name Accession Description Interval E-value
DUF2004 pfam09406
Protein of unknown function (DUF2004); This is a family of proteins with unknown function. The ...
 1-72 6.00e-06

Protein of unknown function (DUF2004); This is a family of proteins with unknown function. The structure of one of the proteins in this family has revealed a novel alpha-beta fold.


Pssm-ID: 430589  Cd Length: 107  Bit Score: 40.15  E-value: 6.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1718115597   1 ILQPILNYYKQK------------RHELGYDVA---FNEDYPLIETVDQLIEHITLVGISVPYDflRDGRDVGVSFDCSW 65
Cdd:pfam09406   6 ARDALANYLGNEfkdtvtkyidfhVEELGPEILeelKEPDDLSKLTEAELLKKLQLIRIGLWPA--EDERFATFDFSIGP 83


                  ....*..
gi 1718115597  66 DEENGLG 72
Cdd:pfam09406  84 DFTDELL 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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