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Conserved domains on  [gi|1719556004|ref|WP_145840185|]
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MULTISPECIES: CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella]

Protein Classification

CDP-alcohol phosphatidyltransferase family protein( domain architecture ID 11439579)

CDP-alcohol phosphatidyltransferase family protein similar to phosphatidylcholine/phosphatidylserine synthase, which catalyzes the condensation of CDP-diacylglycerol with choline or L-serine to form phosphatidylcholine or (3-sn-phosphatidyl)-L-serine, respectively

Gene Ontology:  GO:0016780|GO:0008654

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PssA COG1183
Phosphatidylserine synthase [Lipid transport and metabolism];
10-242 4.74e-94

Phosphatidylserine synthase [Lipid transport and metabolism];


:

Pssm-ID: 440796 [Multi-domain]  Cd Length: 237  Bit Score: 277.85  E-value: 4.74e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  10 KTRGIYLLPNLMTTAGLFSGFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVSFGMAPA 89
Cdd:COG1183     5 RRRAIYLLPNLFTLLNLFCGFLAIVAAIEGDFELAALLILLAAVFDGLDGRVARLLNVQSEFGAELDSLADMVSFGVAPA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  90 LIAYNWGLSELGKIGWLAAFIYCAGAALRLARFNTQVGVaDKRFFQGLASPAAAALIAGSVWLGQGYGVSGHDIGILVAL 169
Cdd:COG1183    85 LLLYQWGLLPLGGLGWLAAFLFAACSALRLARFNVKTDD-DKNYFVGLPSPAAALLVASLVLLGLELGLPGLPNPWVLLA 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1719556004 170 VTAVAGLLMVSNFRYHSFKEVDWRGKVNFLVILLVVAVFVVISVEPALILCLLFYLYALSGPVVTIRSVRKLK 242
Cdd:COG1183   164 LTLLLALLMVSPIPYPSFKRLSLKRRVPLPLLLLVVLAVALLVLYPWLALFLLFLLYLLSGPVLALYRLRRLK 236
 
Name Accession Description Interval E-value
PssA COG1183
Phosphatidylserine synthase [Lipid transport and metabolism];
10-242 4.74e-94

Phosphatidylserine synthase [Lipid transport and metabolism];


Pssm-ID: 440796 [Multi-domain]  Cd Length: 237  Bit Score: 277.85  E-value: 4.74e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  10 KTRGIYLLPNLMTTAGLFSGFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVSFGMAPA 89
Cdd:COG1183     5 RRRAIYLLPNLFTLLNLFCGFLAIVAAIEGDFELAALLILLAAVFDGLDGRVARLLNVQSEFGAELDSLADMVSFGVAPA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  90 LIAYNWGLSELGKIGWLAAFIYCAGAALRLARFNTQVGVaDKRFFQGLASPAAAALIAGSVWLGQGYGVSGHDIGILVAL 169
Cdd:COG1183    85 LLLYQWGLLPLGGLGWLAAFLFAACSALRLARFNVKTDD-DKNYFVGLPSPAAALLVASLVLLGLELGLPGLPNPWVLLA 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1719556004 170 VTAVAGLLMVSNFRYHSFKEVDWRGKVNFLVILLVVAVFVVISVEPALILCLLFYLYALSGPVVTIRSVRKLK 242
Cdd:COG1183   164 LTLLLALLMVSPIPYPSFKRLSLKRRVPLPLLLLVVLAVALLVLYPWLALFLLFLLYLLSGPVLALYRLRRLK 236
pssA TIGR00473
CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine ...
27-184 2.85e-26

CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273098  Cd Length: 151  Bit Score: 100.98  E-value: 2.85e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  27 FSGFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVSFGMAPALIAYNWGlsELGKIGWL 106
Cdd:TIGR00473   6 FSGFLSILSLLRYTIVRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFGVAPAALAYSIG--NFQTIGIL 83
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1719556004 107 AAFIYCAGAALRLARFNtqVGVADKRFFQGLASPAAAALIAGSVWLGQgygvsghdiGILVALVTAVAGLLMVSNFRY 184
Cdd:TIGR00473  84 VAALFFLCGILRLARFN--VLNVKLPSFIGLPIPFAALLVVSLVLLYS---------YLLAAIAACLLSVLMVSNIRY 150
CDP-OH_P_transf pfam01066
CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the ...
15-123 3.86e-18

CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.


Pssm-ID: 460049 [Multi-domain]  Cd Length: 157  Bit Score: 79.52  E-value: 3.86e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  15 YLLPNLMTTAGLFS-GFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVsfGMAPALIAY 93
Cdd:pfam01066   1 LNLPNLLTLLRILLvPVFVVLLLGPGNRILAAVVFALAALTDFLDGKIARKLNQVTDFGKFLDPLADKL--LVAAALIAL 78
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1719556004  94 NWglseLGKI-GWLAAFIYCAGAALRLARFN 123
Cdd:pfam01066  79 SI----LGLLpWWFVVVILVRELGVTLLRFN 105
anchor_synt_A NF038086
protein sorting system archaetidylserine synthase; Members of this family are homologs of ...
29-184 1.47e-07

protein sorting system archaetidylserine synthase; Members of this family are homologs of CDP-diacylglycerol--serine O-phosphatidyltransferase PssA of subclass II, as found in Gram-positive bacteria, but occur in a branch of the archaea. In Haloferax volcanii, the member of this family HVO_1143, together with the PssD-related decarboxylase HVO_0146, were both shown to be required for the archaeosortase ArtA to cause removal of the PGF-CTERM sorting signal and replacement with a prenyl-derived C-terminal lipid anchor. Based on these observations, members of this family are suggested to be CDP-2,3-di-O-geranylgeranyl-sn-glycerol:l-serine O-archaetidyltransferase, generating archaetidylserine en route to archaetidylethanolamine biosynthesis.


Pssm-ID: 468342 [Multi-domain]  Cd Length: 222  Bit Score: 51.18  E-value: 1.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  29 GFYAVIASMNgHFEASAIAVFVAMLFDGLDGRLARLTNTqSAFGAEYDSMADMVSFGMAPALIAY-----NWGLSE---L 100
Cdd:NF038086   21 GFLAAVAAFV-DPALAARLILLAAIADGLDGVVARRYGG-TPAGPYLDSLADVASFGVAPALLVVavvrdAWGAAAdppV 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004 101 GKIGWLAAFIYCAGAALRLARFNTqvgvadkrFFQGLASPAAAALIAGSVWLGQGYGVSGHDIGILVALVTAVAgLLMVS 180
Cdd:NF038086   99 AVGAVVVAALFVAAAVVRLGLYTA--------YDTAHEETEGVQTTLAATILAAAVLAGVTDPAVLVAATVVLA-YLMVS 169

                  ....
gi 1719556004 181 NFRY 184
Cdd:NF038086  170 PITY 173
 
Name Accession Description Interval E-value
PssA COG1183
Phosphatidylserine synthase [Lipid transport and metabolism];
10-242 4.74e-94

Phosphatidylserine synthase [Lipid transport and metabolism];


Pssm-ID: 440796 [Multi-domain]  Cd Length: 237  Bit Score: 277.85  E-value: 4.74e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  10 KTRGIYLLPNLMTTAGLFSGFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVSFGMAPA 89
Cdd:COG1183     5 RRRAIYLLPNLFTLLNLFCGFLAIVAAIEGDFELAALLILLAAVFDGLDGRVARLLNVQSEFGAELDSLADMVSFGVAPA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  90 LIAYNWGLSELGKIGWLAAFIYCAGAALRLARFNTQVGVaDKRFFQGLASPAAAALIAGSVWLGQGYGVSGHDIGILVAL 169
Cdd:COG1183    85 LLLYQWGLLPLGGLGWLAAFLFAACSALRLARFNVKTDD-DKNYFVGLPSPAAALLVASLVLLGLELGLPGLPNPWVLLA 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1719556004 170 VTAVAGLLMVSNFRYHSFKEVDWRGKVNFLVILLVVAVFVVISVEPALILCLLFYLYALSGPVVTIRSVRKLK 242
Cdd:COG1183   164 LTLLLALLMVSPIPYPSFKRLSLKRRVPLPLLLLVVLAVALLVLYPWLALFLLFLLYLLSGPVLALYRLRRLK 236
pssA TIGR00473
CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine ...
27-184 2.85e-26

CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273098  Cd Length: 151  Bit Score: 100.98  E-value: 2.85e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  27 FSGFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVSFGMAPALIAYNWGlsELGKIGWL 106
Cdd:TIGR00473   6 FSGFLSILSLLRYTIVRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFGVAPAALAYSIG--NFQTIGIL 83
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1719556004 107 AAFIYCAGAALRLARFNtqVGVADKRFFQGLASPAAAALIAGSVWLGQgygvsghdiGILVALVTAVAGLLMVSNFRY 184
Cdd:TIGR00473  84 VAALFFLCGILRLARFN--VLNVKLPSFIGLPIPFAALLVVSLVLLYS---------YLLAAIAACLLSVLMVSNIRY 150
CDP-OH_P_transf pfam01066
CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the ...
15-123 3.86e-18

CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.


Pssm-ID: 460049 [Multi-domain]  Cd Length: 157  Bit Score: 79.52  E-value: 3.86e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  15 YLLPNLMTTAGLFS-GFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVsfGMAPALIAY 93
Cdd:pfam01066   1 LNLPNLLTLLRILLvPVFVVLLLGPGNRILAAVVFALAALTDFLDGKIARKLNQVTDFGKFLDPLADKL--LVAAALIAL 78
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1719556004  94 NWglseLGKI-GWLAAFIYCAGAALRLARFN 123
Cdd:pfam01066  79 SI----LGLLpWWFVVVILVRELGVTLLRFN 105
PgsA COG0558
Phosphatidylglycerophosphate synthase [Lipid transport and metabolism]; ...
17-117 9.57e-13

Phosphatidylglycerophosphate synthase [Lipid transport and metabolism]; Phosphatidylglycerophosphate synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 440324 [Multi-domain]  Cd Length: 177  Bit Score: 65.27  E-value: 9.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  17 LPNLMTTAG-LFSGFYAVIASMNGHFEASAIAVFVAMLFDGLDGRLARLTNTQSAFGAEYDSMADMVSFGMAPaliaynW 95
Cdd:COG0558    11 IPNQLTLLRiLLVPVFALLLLLGGALLLALVLFLLAGLTDALDGYLARRLGQVSRFGAFLDPVADKLLDAAAL------L 84
                          90       100
                  ....*....|....*....|..
gi 1719556004  96 GLSELGKIGWLAAFIYCAGAAL 117
Cdd:COG0558    85 GLVLLGLLPAWLALLILLRELL 106
anchor_synt_A NF038086
protein sorting system archaetidylserine synthase; Members of this family are homologs of ...
29-184 1.47e-07

protein sorting system archaetidylserine synthase; Members of this family are homologs of CDP-diacylglycerol--serine O-phosphatidyltransferase PssA of subclass II, as found in Gram-positive bacteria, but occur in a branch of the archaea. In Haloferax volcanii, the member of this family HVO_1143, together with the PssD-related decarboxylase HVO_0146, were both shown to be required for the archaeosortase ArtA to cause removal of the PGF-CTERM sorting signal and replacement with a prenyl-derived C-terminal lipid anchor. Based on these observations, members of this family are suggested to be CDP-2,3-di-O-geranylgeranyl-sn-glycerol:l-serine O-archaetidyltransferase, generating archaetidylserine en route to archaetidylethanolamine biosynthesis.


Pssm-ID: 468342 [Multi-domain]  Cd Length: 222  Bit Score: 51.18  E-value: 1.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  29 GFYAVIASMNgHFEASAIAVFVAMLFDGLDGRLARLTNTqSAFGAEYDSMADMVSFGMAPALIAY-----NWGLSE---L 100
Cdd:NF038086   21 GFLAAVAAFV-DPALAARLILLAAIADGLDGVVARRYGG-TPAGPYLDSLADVASFGVAPALLVVavvrdAWGAAAdppV 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004 101 GKIGWLAAFIYCAGAALRLARFNTqvgvadkrFFQGLASPAAAALIAGSVWLGQGYGVSGHDIGILVALVTAVAgLLMVS 180
Cdd:NF038086   99 AVGAVVVAALFVAAAVVRLGLYTA--------YDTAHEETEGVQTTLAATILAAAVLAGVTDPAVLVAATVVLA-YLMVS 169

                  ....
gi 1719556004 181 NFRY 184
Cdd:NF038086  170 PITY 173
EPT1 COG5050
sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and ...
18-98 2.27e-05

sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism];


Pssm-ID: 444050  Cd Length: 176  Bit Score: 43.91  E-value: 2.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1719556004  18 PNLMTTAGLF---SGFYAVIASmNGHFEASAIAV----FVAMLFDGLDGRLARLTNTQSAFGAEYDSMADmvsfGMAPAL 90
Cdd:COG5050    38 PNLLTASGALgalAIFVGYLAS-NGDTGAYLWLApvglIVYWFGDSLDGSLARRTGISRPYGEFLDHSLD----ALATLL 112

                  ....*...
gi 1719556004  91 IAYNWGLS 98
Cdd:COG5050   113 IVIGLGLS 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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