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Conserved domains on  [gi|1722175698|ref|WP_146490050|]
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MULTISPECIES: HopJ type III effector protein [Vibrio]

Protein Classification

HopJ type III effector protein( domain architecture ID 10556267)

HopJ type III effector protein (T3SE) may act as a virulence factor that combats host immunity and promotes disease in diverse Gram-negative pathogens like Pseudomonas syringae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HopJ pfam08888
HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant ...
 3-111 6.48e-67

HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.


:

Pssm-ID: 430288  Cd Length: 109  Bit Score: 196.65  E-value: 6.48e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722175698   3 LETLLNTLAETPESVQFEETMQVIEAHYDFTESEFRNGEVVNAAGQNNGSCKIFSFGLAQGLSVEQTLACFGQFYRNDVL 82
Cdd:pfam08888   1 LTDFLAKLKNNPESITFEDTIAVIEAHYDFTPTAFKNGDLVNAAGENNGSCKIFAFAKLNGLSKEQTLACFGDYYREDVL 80

                          90       100
                  ....*....|....*....|....*....
gi 1722175698  83 AFPKNTDHQNIRNFMVHGWNGIQFSQPAL 111
Cdd:pfam08888  81 ANPEGTDHQNIRNFMKTGWEGVQFEGEAL 109
 
Name Accession Description Interval E-value
HopJ pfam08888
HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant ...
 3-111 6.48e-67

HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.


Pssm-ID: 430288  Cd Length: 109  Bit Score: 196.65  E-value: 6.48e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722175698   3 LETLLNTLAETPESVQFEETMQVIEAHYDFTESEFRNGEVVNAAGQNNGSCKIFSFGLAQGLSVEQTLACFGQFYRNDVL 82
Cdd:pfam08888   1 LTDFLAKLKNNPESITFEDTIAVIEAHYDFTPTAFKNGDLVNAAGENNGSCKIFAFAKLNGLSKEQTLACFGDYYREDVL 80

                          90       100
                  ....*....|....*....|....*....
gi 1722175698  83 AFPKNTDHQNIRNFMVHGWNGIQFSQPAL 111
Cdd:pfam08888  81 ANPEGTDHQNIRNFMKTGWEGVQFEGEAL 109
 
Name Accession Description Interval E-value
HopJ pfam08888
HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant ...
 3-111 6.48e-67

HopJ type III effector protein; Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.


Pssm-ID: 430288  Cd Length: 109  Bit Score: 196.65  E-value: 6.48e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722175698   3 LETLLNTLAETPESVQFEETMQVIEAHYDFTESEFRNGEVVNAAGQNNGSCKIFSFGLAQGLSVEQTLACFGQFYRNDVL 82
Cdd:pfam08888   1 LTDFLAKLKNNPESITFEDTIAVIEAHYDFTPTAFKNGDLVNAAGENNGSCKIFAFAKLNGLSKEQTLACFGDYYREDVL 80

                          90       100
                  ....*....|....*....|....*....
gi 1722175698  83 AFPKNTDHQNIRNFMVHGWNGIQFSQPAL 111
Cdd:pfam08888  81 ANPEGTDHQNIRNFMKTGWEGVQFEGEAL 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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