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Conserved domains on  [gi|1740773324|ref|WP_149236696|]
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N-6 DNA methylase, partial [Klebsiella pneumoniae]

Protein Classification

N-6 DNA methylase family protein( domain architecture ID 1006218)

N-6 DNA methylase family protein might be a component of a type I or type IC restriction system and protect the host DNA from digestion via sequence-specific methylation

CATH:  1.20.1260.30
EC:  2.1.1.-
Gene Ontology:  GO:0008168|GO:0003677
PubMed:  35205080
SCOP:  4003146

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
N6_Mtase super family cl37510
N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against ...
119-416 3.26e-95

N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.


The actual alignment was detected with superfamily member pfam02384:

Pssm-ID: 426749 [Multi-domain]  Cd Length: 310  Bit Score: 289.22  E-value: 3.26e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 119 YLFEKIASDSAMRGAEFYTPDGVSLLFAELLQPRDGDSICDPTCGSGSLLITLGEKIKK-SFRSDNYTLFGQEVNRSIWA 197
Cdd:pfam02384  11 YLLRKFAPNAGKSGGEFFTPREVSKLIVELLDPKPGESIYDPACGSGGFLIQAEKFVKEhDGDTNDLSIYGQEKNPTTYR 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 198 LAKMNMIMHNeIN---SRIEWGDVISNPQLldtdNRLMQFDVVASNPPLNIIGWNHDDLVRNDYGRFNLGFPPQSKGDYA 274
Cdd:pfam02384  91 LARMNMILHG-IEyddFHIRHGDTLTSPKF----EDDKKFDVVVANPPFSDKWDANDTLENDPRFRPAYGVAPKSNADLA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 275 FILHMVSTLKsATGRMAILVSHGVLFRGGQEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRN--NSNVVF 352
Cdd:pfam02384 166 FLQHIIYYLA-PGGRAAVVLPNGVLFRGGAEGKIRKALVDKDLVETVIALPPNLFYNTSIPTCILFLTKNKAerKGKVLF 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1740773324 353 IDASDLAKPVKGRNLITNEIIEKISKCYFERSSVDDFSHVASYDEIQLNDFNLNISRYVKKHEE 416
Cdd:pfam02384 245 IDASNEFKKEGKLNILTDEHIEKIIDTFGEFKDVDGFSKSATLEEIAANDYNLNVGRYVGTEEE 308
 
Name Accession Description Interval E-value
N6_Mtase pfam02384
N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against ...
119-416 3.26e-95

N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.


Pssm-ID: 426749 [Multi-domain]  Cd Length: 310  Bit Score: 289.22  E-value: 3.26e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 119 YLFEKIASDSAMRGAEFYTPDGVSLLFAELLQPRDGDSICDPTCGSGSLLITLGEKIKK-SFRSDNYTLFGQEVNRSIWA 197
Cdd:pfam02384  11 YLLRKFAPNAGKSGGEFFTPREVSKLIVELLDPKPGESIYDPACGSGGFLIQAEKFVKEhDGDTNDLSIYGQEKNPTTYR 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 198 LAKMNMIMHNeIN---SRIEWGDVISNPQLldtdNRLMQFDVVASNPPLNIIGWNHDDLVRNDYGRFNLGFPPQSKGDYA 274
Cdd:pfam02384  91 LARMNMILHG-IEyddFHIRHGDTLTSPKF----EDDKKFDVVVANPPFSDKWDANDTLENDPRFRPAYGVAPKSNADLA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 275 FILHMVSTLKsATGRMAILVSHGVLFRGGQEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRN--NSNVVF 352
Cdd:pfam02384 166 FLQHIIYYLA-PGGRAAVVLPNGVLFRGGAEGKIRKALVDKDLVETVIALPPNLFYNTSIPTCILFLTKNKAerKGKVLF 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1740773324 353 IDASDLAKPVKGRNLITNEIIEKISKCYFERSSVDDFSHVASYDEIQLNDFNLNISRYVKKHEE 416
Cdd:pfam02384 245 IDASNEFKKEGKLNILTDEHIEKIIDTFGEFKDVDGFSKSATLEEIAANDYNLNVGRYVGTEEE 308
HsdM COG0286
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];
119-357 1.83e-85

Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];


Pssm-ID: 440055 [Multi-domain]  Cd Length: 243  Bit Score: 261.66  E-value: 1.83e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 119 YLFEKIASDSAMRGAEFYTPDGVSLLFAELLQPRDGDSICDPTCGSGSLLITLGEKIKKSFRSD--NYTLFGQEVNRSIW 196
Cdd:COG0286     9 YLLRKFAEESGKKAGEFYTPREVVRLMVELLDPKPGETVYDPACGSGGFLVEAAEYLKEHGGDErkKLSLYGQEINPTTY 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 197 ALAKMNMIMHNEINSRIEWGDVisnpqLLDTDNRLMQFDVVASNPPLNIIgWNHDDLVRNDYGRFNLGFPPQSKGDYAFI 276
Cdd:COG0286    89 RLAKMNLLLHGIGDPNIELGDT-----LSNDGDELEKFDVVLANPPFGGK-WKKEELKDDLLGRFGYGLPPKSNADLLFL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 277 LHMVSTLKSaTGRMAILVSHGVLFRGGqEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRNN--SNVVFID 354
Cdd:COG0286   163 QHILSLLKP-GGRAAVVLPDGVLFRGA-EKEIRKKLLENDLLEAIIGLPSNLFYNTGIPTCILFLTKGKPErtGKVLFID 240

                  ...
gi 1740773324 355 ASD 357
Cdd:COG0286   241 ASK 243
hsdM TIGR00497
type I restriction system adenine methylase (hsdM); Function: methylation of specific adenine ...
68-433 1.79e-59

type I restriction system adenine methylase (hsdM); Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification]


Pssm-ID: 211578 [Multi-domain]  Cd Length: 501  Bit Score: 202.49  E-value: 1.79e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324  68 LFESIKFATVNFGAK-SERDRMLNELLDIFASPEMKfDYTQDGNKKIKVACRYLFEKIASDSAMRGAEFYTPDGVSLLFA 146
Cdd:TIGR00497 130 LFKDFNVSEVKLGSTlTIRTEKLKELLTSIDTMELD-EFEKNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLA 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 147 EL-LQPRDG-DSICDPTCGSGSLLITLGEKIKKSFRSDNYtlFGQEVNRSIWALAKMNMIMHN--EINSRIEWGDVISNP 222
Cdd:TIGR00497 209 RIaIGKKDTvDDVYDMACGSGSLLLQVIKVLGEKTSLVSY--YGQEINHTTYNLCRMNMILHNidYANFNIINADTLTTK 286
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 223 QLLDTDNrlmqFDVVASNPPLNI--IGWNHDDLVRNDygRFNLG--FPPQSKGDYAFILHMVSTLkSATGRMAILVSHGV 298
Cdd:TIGR00497 287 EWENENG----FEVVVSNPPYSIswAGDKKSNLVSDV--RFKDAgtLAPNSKADLAFVLHALYVL-GQEGTAAIVCFPGI 359
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 299 LFRGGQEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRNNSNVVFIDASDLAKPVKGRNLITNEIIEKISK 378
Cdd:TIGR00497 360 LYREGKEQTIRKYLVDQNFVDAVIQLPSNLFSTTSIATSILVLKKNRKKDPIFFIDGSNEFVREKKNNRLSPKNIEKIVD 439
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1740773324 379 CYFERSSVDDFSHVASYDEIQLNDFNLNISRYVKKHEEQVFVDLERLRHQREELL 433
Cdd:TIGR00497 440 CFNSKKEEANFAKSVERDKIRESNYDLTVGKYVNSEAEKEELDIKVLNHSIDEIV 494
 
Name Accession Description Interval E-value
N6_Mtase pfam02384
N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against ...
119-416 3.26e-95

N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.


Pssm-ID: 426749 [Multi-domain]  Cd Length: 310  Bit Score: 289.22  E-value: 3.26e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 119 YLFEKIASDSAMRGAEFYTPDGVSLLFAELLQPRDGDSICDPTCGSGSLLITLGEKIKK-SFRSDNYTLFGQEVNRSIWA 197
Cdd:pfam02384  11 YLLRKFAPNAGKSGGEFFTPREVSKLIVELLDPKPGESIYDPACGSGGFLIQAEKFVKEhDGDTNDLSIYGQEKNPTTYR 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 198 LAKMNMIMHNeIN---SRIEWGDVISNPQLldtdNRLMQFDVVASNPPLNIIGWNHDDLVRNDYGRFNLGFPPQSKGDYA 274
Cdd:pfam02384  91 LARMNMILHG-IEyddFHIRHGDTLTSPKF----EDDKKFDVVVANPPFSDKWDANDTLENDPRFRPAYGVAPKSNADLA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 275 FILHMVSTLKsATGRMAILVSHGVLFRGGQEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRN--NSNVVF 352
Cdd:pfam02384 166 FLQHIIYYLA-PGGRAAVVLPNGVLFRGGAEGKIRKALVDKDLVETVIALPPNLFYNTSIPTCILFLTKNKAerKGKVLF 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1740773324 353 IDASDLAKPVKGRNLITNEIIEKISKCYFERSSVDDFSHVASYDEIQLNDFNLNISRYVKKHEE 416
Cdd:pfam02384 245 IDASNEFKKEGKLNILTDEHIEKIIDTFGEFKDVDGFSKSATLEEIAANDYNLNVGRYVGTEEE 308
HsdM COG0286
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];
119-357 1.83e-85

Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];


Pssm-ID: 440055 [Multi-domain]  Cd Length: 243  Bit Score: 261.66  E-value: 1.83e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 119 YLFEKIASDSAMRGAEFYTPDGVSLLFAELLQPRDGDSICDPTCGSGSLLITLGEKIKKSFRSD--NYTLFGQEVNRSIW 196
Cdd:COG0286     9 YLLRKFAEESGKKAGEFYTPREVVRLMVELLDPKPGETVYDPACGSGGFLVEAAEYLKEHGGDErkKLSLYGQEINPTTY 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 197 ALAKMNMIMHNEINSRIEWGDVisnpqLLDTDNRLMQFDVVASNPPLNIIgWNHDDLVRNDYGRFNLGFPPQSKGDYAFI 276
Cdd:COG0286    89 RLAKMNLLLHGIGDPNIELGDT-----LSNDGDELEKFDVVLANPPFGGK-WKKEELKDDLLGRFGYGLPPKSNADLLFL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 277 LHMVSTLKSaTGRMAILVSHGVLFRGGqEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRNN--SNVVFID 354
Cdd:COG0286   163 QHILSLLKP-GGRAAVVLPDGVLFRGA-EKEIRKKLLENDLLEAIIGLPSNLFYNTGIPTCILFLTKGKPErtGKVLFID 240

                  ...
gi 1740773324 355 ASD 357
Cdd:COG0286   241 ASK 243
hsdM TIGR00497
type I restriction system adenine methylase (hsdM); Function: methylation of specific adenine ...
68-433 1.79e-59

type I restriction system adenine methylase (hsdM); Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification]


Pssm-ID: 211578 [Multi-domain]  Cd Length: 501  Bit Score: 202.49  E-value: 1.79e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324  68 LFESIKFATVNFGAK-SERDRMLNELLDIFASPEMKfDYTQDGNKKIKVACRYLFEKIASDSAMRGAEFYTPDGVSLLFA 146
Cdd:TIGR00497 130 LFKDFNVSEVKLGSTlTIRTEKLKELLTSIDTMELD-EFEKNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLA 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 147 EL-LQPRDG-DSICDPTCGSGSLLITLGEKIKKSFRSDNYtlFGQEVNRSIWALAKMNMIMHN--EINSRIEWGDVISNP 222
Cdd:TIGR00497 209 RIaIGKKDTvDDVYDMACGSGSLLLQVIKVLGEKTSLVSY--YGQEINHTTYNLCRMNMILHNidYANFNIINADTLTTK 286
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 223 QLLDTDNrlmqFDVVASNPPLNI--IGWNHDDLVRNDygRFNLG--FPPQSKGDYAFILHMVSTLkSATGRMAILVSHGV 298
Cdd:TIGR00497 287 EWENENG----FEVVVSNPPYSIswAGDKKSNLVSDV--RFKDAgtLAPNSKADLAFVLHALYVL-GQEGTAAIVCFPGI 359
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 299 LFRGGQEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRRDRNNSNVVFIDASDLAKPVKGRNLITNEIIEKISK 378
Cdd:TIGR00497 360 LYREGKEQTIRKYLVDQNFVDAVIQLPSNLFSTTSIATSILVLKKNRKKDPIFFIDGSNEFVREKKNNRLSPKNIEKIVD 439
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1740773324 379 CYFERSSVDDFSHVASYDEIQLNDFNLNISRYVKKHEEQVFVDLERLRHQREELL 433
Cdd:TIGR00497 440 CFNSKKEEANFAKSVERDKIRESNYDLTVGKYVNSEAEKEELDIKVLNHSIDEIV 494
YtxK COG0827
Adenine-specific DNA N6-methylase [Replication, recombination and repair];
136-343 1.22e-08

Adenine-specific DNA N6-methylase [Replication, recombination and repair];


Pssm-ID: 440589 [Multi-domain]  Cd Length: 327  Bit Score: 56.50  E-value: 1.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 136 YTPDGVSLLFAELLQ---PRDGDSICDPTCGSGSLLITLGEKIKKsfrsdNYTLFGQEVNRSIWALAKMNM-IMHNEINs 211
Cdd:COG0827    95 MTPDAIGLLIGYLVEkftKKEGLRILDPAVGTGNLLTTVLNQLKK-----KVNAYGVEVDDLLIRLAAVLAnLQGHPVE- 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 212 rIEWGDVIsNPQLLDtdnrlmQFDVVASNPPlniIGWNHDDLVRNdygRFNLGFPPQSKgdYA---FILHMVSTLKSAtG 288
Cdd:COG0827   169 -LFHQDAL-QPLLID------PVDVVISDLP---VGYYPNDERAK---RFKLKADEGHS--YAhhlFIEQSLNYLKPG-G 231
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1740773324 289 RMAILVSHGvLFRGGQEESIRKNLISEGLLDAVIGLPDRLLPGTAIPTAILIFRR 343
Cdd:COG0827   232 YLFFLVPSN-LFESDQAAQLREFLKEKAHIQGLIQLPESLFKNEAAAKSILILQK 285
UPF0020 pfam01170
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ...
151-242 1.57e-07

Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.


Pssm-ID: 395932 [Multi-domain]  Cd Length: 184  Bit Score: 51.20  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 151 PRDGDSICDPTCGSGSLLI---TLGEKIKKSFRSDNYT--LFGQEVNRSIWALAKMNMimhneinSRIEWGDVISNPQLL 225
Cdd:pfam01170  26 WKPGDPLLDPMCGSGTILIeaaLMGANIAPGKFDARVRapLYGSDIDRRMVQGARLNA-------ENAGVGDLIEFVQAD 98
                          90
                  ....*....|....*....
gi 1740773324 226 DTDNRLM--QFDVVASNPP 242
Cdd:pfam01170  99 AADLPLLegSVDVIVTNPP 117
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
152-246 1.85e-04

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 41.86  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 152 RDGDSICDPTCGSGSLLI---TLGekikksfrsdnYTLFGQEVNRSIWALAKMNMIMHNEINSRIEWGDvISNPQLLDTd 228
Cdd:COG1041    25 KEGDTVLDPFCGTGTILIeagLLG-----------RRVIGSDIDPKMVEGARENLEHYGYEDADVIRGD-ARDLPLADE- 91
                          90
                  ....*....|....*...
gi 1740773324 229 nrlmQFDVVASNPPLNII 246
Cdd:COG1041    92 ----SVDAIVTDPPYGRS 105
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
134-242 1.38e-03

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 39.50  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 134 EFYTPDGV---------SLLFAELLQPRDGDSICDPTCGSGSLLITLGEkikksfRSDNYTLFGQEVNRSIWALAKMNMI 204
Cdd:pfam05175   3 TFKTLPGVfshgrldigSRLLLEHLPKDLSGKVLDLGCGAGVLGAALAK------ESPDAELTMVDINARALESARENLA 76
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1740773324 205 MHNEINSRIEWGDVISNPQLldtdnrlMQFDVVASNPP 242
Cdd:pfam05175  77 ANGLENGEVVASDVYSGVED-------GKFDLIISNPP 107
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
139-242 2.28e-03

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 39.36  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 139 DGVslLFAELLQPRDGDSICDPTCGSGSLLITLgekikkSFRSDNYTLFGQEVNRSIWALAKMNmIMHNEINSRIE--WG 216
Cdd:COG4123    25 DAV--LLAAFAPVKKGGRVLDLGTGTGVIALML------AQRSPGARITGVEIQPEAAELARRN-VALNGLEDRITviHG 95
                          90       100
                  ....*....|....*....|....*.
gi 1740773324 217 DVISNPQLLDTDnrlmQFDVVASNPP 242
Cdd:COG4123    96 DLKEFAAELPPG----SFDLVVSNPP 117
Eco57I pfam07669
Eco57I restriction-modification methylase; homologs of the Escherichia coli Eco57I ...
232-347 4.40e-03

Eco57I restriction-modification methylase; homologs of the Escherichia coli Eco57I restriction-modification methylase are found in several phylogenetically diverse bacteria. The structure of TaqI has been solved.


Pssm-ID: 369456 [Multi-domain]  Cd Length: 104  Bit Score: 36.51  E-value: 4.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740773324 232 MQFDVVASNPPlniigwnhddlvrndYGRFNLGFPPQSKGDYAFILHMVSTLKSATGRMAILVSHGVLFRGGQE-ESIRK 310
Cdd:pfam07669   1 MKFDVIIGNPP---------------YQESNGGAGLGNSAAPIYQYFVELADKLEPKYLAMIIPARWIHNSGKGlKEFRE 65
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1740773324 311 NLISEGLLDAVIGLPD--RLLPGTAIPTAILIFRRDRNN 347
Cdd:pfam07669  66 KMLKDKHLRVLVDFPDskDVFPGVDIKGGICYFLWDKDK 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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