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Conserved domains on  [gi|1741144478|ref|WP_149543874|]
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transposase family protein, partial [Escherichia coli]

Protein Classification

transposase family protein( domain architecture ID 10619169)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0006313|GO:0003677|GO:0032196|GO:0015074|GO:0006310|GO:0004803
PubMed:  11774877|20215432|20615441

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-55 9.91e-22

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


:

Pssm-ID: 433493  Cd Length: 88  Bit Score: 79.12  E-value: 9.91e-22
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1741144478  7 MEHISIVPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHL 55
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKL 49
 
Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-55 9.91e-22

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


Pssm-ID: 433493  Cd Length: 88  Bit Score: 79.12  E-value: 9.91e-22
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1741144478  7 MEHISIVPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHL 55
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKL 49
transpos_ISAs1 NF033564
ISAs1 family transposase;
29-55 7.94e-11

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 54.47  E-value: 7.94e-11
                          10        20
                  ....*....|....*....|....*..
gi 1741144478  29 ILLLTICAVISGAEGWEDIEDFGETHL 55
Cdd:NF033564    1 ILFLALCAVLSGAEGWEEIEDFGEAKL 27
 
Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-55 9.91e-22

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


Pssm-ID: 433493  Cd Length: 88  Bit Score: 79.12  E-value: 9.91e-22
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1741144478  7 MEHISIVPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHL 55
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKL 49
transpos_ISAs1 NF033564
ISAs1 family transposase;
29-55 7.94e-11

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 54.47  E-value: 7.94e-11
                          10        20
                  ....*....|....*....|....*..
gi 1741144478  29 ILLLTICAVISGAEGWEDIEDFGETHL 55
Cdd:NF033564    1 ILFLALCAVLSGAEGWEEIEDFGEAKL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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