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Conserved domains on  [gi|1743250447|ref|WP_149822451|]
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hypothetical protein, partial [Salinarimonas soli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
kgd super family cl39092
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 1-71 5.97e-21

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


The actual alignment was detected with superfamily member PRK12270:

Pssm-ID: 476867 [Multi-domain]  Cd Length: 1228  Bit Score: 84.17  E-value: 5.97e-21
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1743250447    1 VQRDFHEQLEQVFNDVRQAEKGGkPQEQTGITASQDLPHGLDTSISKELLAEIGDKFYNTPDYLKVHPRVA 71
Cdd:PRK12270   803 ALRDYQGQLERVFNEVREAEKKP-PEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLK 872
 
Name Accession Description Interval E-value
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 1-71 5.97e-21

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 84.17  E-value: 5.97e-21
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1743250447    1 VQRDFHEQLEQVFNDVRQAEKGGkPQEQTGITASQDLPHGLDTSISKELLAEIGDKFYNTPDYLKVHPRVA 71
Cdd:PRK12270   803 ALRDYQGQLERVFNEVREAEKKP-PEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLK 872
 
Name Accession Description Interval E-value
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 1-71 5.97e-21

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 84.17  E-value: 5.97e-21
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1743250447    1 VQRDFHEQLEQVFNDVRQAEKGGkPQEQTGITASQDLPHGLDTSISKELLAEIGDKFYNTPDYLKVHPRVA 71
Cdd:PRK12270   803 ALRDYQGQLERVFNEVREAEKKP-PEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLK 872
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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