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Conserved domains on  [gi|1746129101|ref|WP_149881051|]
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ArdC family protein, partial [Alistipes finegoldii]

Protein Classification

ArdC family protein( domain architecture ID 10552163)

ArdC family protein is a DUF1738 domain-containing protein; similar to antirestriction protein ArdC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
 8-137 5.29e-40

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


:

Pssm-ID: 429975  Cd Length: 127  Bit Score: 130.54  E-value: 5.29e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1746129101   8 KIAPQLTELMIKKMETLTGEWRKPWIADLAHGLPRNL-RGTHYRGGNILMLLFLSEIAGYRTPLFMTFKQAKEEGLNILK 86
Cdd:pfam08401   2 DLYERITDQIIEALEAGVGPWQKPWSTGGAGGLPRNAaTGRPYSGINVLLLWLAAPEAGYTSPRWLTFKQAKELGGQVRK 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1746129101  87 GSGSFPVFFWKLYIRHKETRKkielaEYYRLPQEQRRQYDVLPVMRYYPVF 137
Cdd:pfam08401  82 GEKGTPVVYYKFFVKEDEDDK-----DYKEADEEGEEEEREIPFLKTYTVF 127
 
Name Accession Description Interval E-value
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
 8-137 5.29e-40

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


Pssm-ID: 429975  Cd Length: 127  Bit Score: 130.54  E-value: 5.29e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1746129101   8 KIAPQLTELMIKKMETLTGEWRKPWIADLAHGLPRNL-RGTHYRGGNILMLLFLSEIAGYRTPLFMTFKQAKEEGLNILK 86
Cdd:pfam08401   2 DLYERITDQIIEALEAGVGPWQKPWSTGGAGGLPRNAaTGRPYSGINVLLLWLAAPEAGYTSPRWLTFKQAKELGGQVRK 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1746129101  87 GSGSFPVFFWKLYIRHKETRKkielaEYYRLPQEQRRQYDVLPVMRYYPVF 137
Cdd:pfam08401  82 GEKGTPVVYYKFFVKEDEDDK-----DYKEADEEGEEEEREIPFLKTYTVF 127
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
8-139 1.14e-38

Antirestriction protein ArdC [Replication, recombination and repair];


Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 132.28  E-value: 1.14e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1746129101   8 KIAPQLTELMIKKMETLTGEWRKPWIADLA-HGLPRNL-RGTHYRGGNILMLLFLSEIAGYRTPLFMTFKQAKEEGLNIL 85
Cdd:COG4227     9 DIYQEVTDRIIAALEAGTLPWRKPWNSSGAgLGLPLNAaTGRPYRGINVLLLWMAAEERGYTSPRWLTFKQAKELGGQVR 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1746129101  86 KGSGSFPVFFWKLYIRHKETRKKIElaeyyRLPQEQRRqydvlPVMRYYPVFNI 139
Cdd:COG4227    89 KGEKGTLVVYYKRFEKEDEDEEDEE-----GEEVERRI-----PFLKAYTVFNA 132
 
Name Accession Description Interval E-value
ArdcN pfam08401
N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of ...
 8-137 5.29e-40

N-terminal domain of anti-restriction factor ArdC; This is the ssDNA binding domain of anti-restriction factor ArdC deployed by plasmids and phages in polyvalent proteins related to the BHD domains of XPC/Rad4 and the Tc-38 domain found in kinetoplastid minicircle binding proteins. The structure of this domain is composed of three alpha-helices and a three-stranded beta-sheet that supports a long and protuberant beta-hairpin. This domain is also found in the N-terminal region of the RP4 TraC1 primase, together with the Toprim domain (pfam01751, pfam13362 and pfam13662).


Pssm-ID: 429975  Cd Length: 127  Bit Score: 130.54  E-value: 5.29e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1746129101   8 KIAPQLTELMIKKMETLTGEWRKPWIADLAHGLPRNL-RGTHYRGGNILMLLFLSEIAGYRTPLFMTFKQAKEEGLNILK 86
Cdd:pfam08401   2 DLYERITDQIIEALEAGVGPWQKPWSTGGAGGLPRNAaTGRPYSGINVLLLWLAAPEAGYTSPRWLTFKQAKELGGQVRK 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1746129101  87 GSGSFPVFFWKLYIRHKETRKkielaEYYRLPQEQRRQYDVLPVMRYYPVF 137
Cdd:pfam08401  82 GEKGTPVVYYKFFVKEDEDDK-----DYKEADEEGEEEEREIPFLKTYTVF 127
ArdC COG4227
Antirestriction protein ArdC [Replication, recombination and repair];
8-139 1.14e-38

Antirestriction protein ArdC [Replication, recombination and repair];


Pssm-ID: 443371 [Multi-domain]  Cd Length: 303  Bit Score: 132.28  E-value: 1.14e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1746129101   8 KIAPQLTELMIKKMETLTGEWRKPWIADLA-HGLPRNL-RGTHYRGGNILMLLFLSEIAGYRTPLFMTFKQAKEEGLNIL 85
Cdd:COG4227     9 DIYQEVTDRIIAALEAGTLPWRKPWNSSGAgLGLPLNAaTGRPYRGINVLLLWMAAEERGYTSPRWLTFKQAKELGGQVR 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1746129101  86 KGSGSFPVFFWKLYIRHKETRKKIElaeyyRLPQEQRRqydvlPVMRYYPVFNI 139
Cdd:COG4227    89 KGEKGTLVVYYKRFEKEDEDEEDEE-----GEEVERRI-----PFLKAYTVFNA 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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