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Conserved domains on  [gi|1752459969|ref|WP_150442157|]
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2Fe-2S iron-sulfur cluster binding domain-containing protein [Niallia endozanthoxylica]

Protein Classification

similar to 2Fe-2S ferredoxin-5( domain architecture ID 10001920)

protein similar to 2Fe-2S ferredoxin-5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-87 2.31e-22

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 82.59  E-value: 2.31e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969  1 MLNIKVLDQnGPIITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTY 80
Cdd:COG0633    1 MPKVTFIPE-GHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDA--LSDEERAAGSRLACQAR 77


                 ....*..
gi 1752459969 81 PRSNLTV 87
Cdd:COG0633   78 PTSDLVV 84
 
Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-87 2.31e-22

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 82.59  E-value: 2.31e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969  1 MLNIKVLDQnGPIITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTY 80
Cdd:COG0633    1 MPKVTFIPE-GHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDA--LSDEERAAGSRLACQAR 77


                 ....*..
gi 1752459969 81 PRSNLTV 87
Cdd:COG0633   78 PTSDLVV 84
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 14-87 3.66e-20

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 77.05  E-value: 3.66e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1752459969 14 ITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYPRSNLTV 87
Cdd:cd00207   12 VEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSL--LDEEEAEGGYVLACQTRVTDGLVI 83
PTZ00038 PTZ00038
ferredoxin; Provisional
 3-89 8.64e-16

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 68.71  E-value: 8.64e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969   3 NIKVLDQNG-PIITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYP 81
Cdd:PTZ00038   97 NITLQTPDGeKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSY--LDDEQLKKGYCLLCTCYP 174


                  ....*...
gi 1752459969  82 RSNLTVLT 89
Cdd:PTZ00038  175 KSDCTIET 182
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 14-89 5.75e-15

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 64.01  E-value: 5.75e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752459969 14 ITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYPRSNLTVLT 89
Cdd:TIGR02008 17 IECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSF--LDDDQMEAGYVLTCVAYPTSDCTIET 90
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
7-82 2.73e-13

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 59.46  E-value: 2.73e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1752459969  7 LDQNGPIITCDENES-LLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMsmaTLPESERELNYT-LACKTYPR 82
Cdd:pfam00111  3 INGKGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQSDQS---FLEDDELAAGYVvLACQTYPK 77
 
Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-87 2.31e-22

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 82.59  E-value: 2.31e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969  1 MLNIKVLDQnGPIITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTY 80
Cdd:COG0633    1 MPKVTFIPE-GHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDA--LSDEERAAGSRLACQAR 77


                 ....*..
gi 1752459969 81 PRSNLTV 87
Cdd:COG0633   78 PTSDLVV 84
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 14-87 3.66e-20

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 77.05  E-value: 3.66e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1752459969 14 ITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYPRSNLTV 87
Cdd:cd00207   12 VEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSL--LDEEEAEGGYVLACQTRVTDGLVI 83
NqrF COG2871
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and ...
 14-87 1.87e-19

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442118 [Multi-domain]  Cd Length: 396  Bit Score: 80.68  E-value: 1.87e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1752459969  14 ITCDENESLLDASNRQGVKIPYACKGGG-CGLCKVKIEEGEYFRKKMSMATLPESERELNYTLACKTYPRSNLTV 87
Cdd:COG2871    46 IEVEEGQTLLDALLRQGIFLPSACGGGGtCGQCKVKVLEGGGDILPTETFHLSDRERKEGYRLACQVKVKSDMEI 120
PTZ00038 PTZ00038
ferredoxin; Provisional
 3-89 8.64e-16

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 68.71  E-value: 8.64e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969   3 NIKVLDQNG-PIITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYP 81
Cdd:PTZ00038   97 NITLQTPDGeKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSY--LDDEQLKKGYCLLCTCYP 174


                  ....*...
gi 1752459969  82 RSNLTVLT 89
Cdd:PTZ00038  175 KSDCTIET 182
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 1-90 5.19e-15

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 68.36  E-value: 5.19e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969   1 MLNIKVLdQNGPIITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMATLPESERELNYTLACKTY 80
Cdd:PRK07609    2 SFQVTLQ-PSGRQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAK 80

                          90
                  ....*....|
gi 1752459969  81 PRSNLTVLTD 90
Cdd:PRK07609   81 PLSDLVLEAR 90
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 1-87 5.54e-15

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 68.68  E-value: 5.54e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752459969   1 MLNIKV-LDQNGPIITCDENESLLDASNRQGVKIPYACKGGG-CGLCKVKIEEGEYFRKKMS-MATLPESERELNYTLAC 77
Cdd:COG3894     1 MPKVKVtFLPSGKRVEVEAGTTLLDAAREAGVDIDAPCGGRGtCGKCKVKVEEGEFSPVTEEeRRLLSPEELAEGYRLAC 80

                          90
                  ....*....|
gi 1752459969  78 KTYPRSNLTV 87
Cdd:COG3894    81 QARVLGDLVV 90
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 14-89 5.75e-15

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 64.01  E-value: 5.75e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752459969 14 ITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYPRSNLTVLT 89
Cdd:TIGR02008 17 IECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSF--LDDDQMEAGYVLTCVAYPTSDCTIET 90
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
7-82 2.73e-13

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 59.46  E-value: 2.73e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1752459969  7 LDQNGPIITCDENES-LLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMsmaTLPESERELNYT-LACKTYPR 82
Cdd:pfam00111  3 INGKGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQSDQS---FLEDDELAAGYVvLACQTYPK 77
petF CHL00134
ferredoxin; Validated
 13-89 1.87e-12

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 57.81  E-value: 1.87e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1752459969 13 IITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYPRSNLTVLT 89
Cdd:CHL00134  18 TIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSF--LDDDQLEAGFVLTCVAYPTSDCTILT 92
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
18-90 3.29e-10

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 54.75  E-value: 3.29e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1752459969  18 ENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMATLPESERELNYTLACKTYPRSNLTVLTD 90
Cdd:PRK11872   21 KDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKSDAAFYFD 93
PLN03136 PLN03136
Ferredoxin; Provisional
 14-89 3.49e-10

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 53.21  E-value: 3.49e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752459969  14 ITCDENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYFRKKMSMatLPESERELNYTLACKTYPRSNLTVLT 89
Cdd:PLN03136   68 VECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSF--LDDEQISEGYVLTCVAYPTSDVVIET 141
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 21-87 6.01e-10

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 53.94  E-value: 6.01e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1752459969  21 SLLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYfrKKMSMATLPESERELNYTLACKTYPRSNLTV 87
Cdd:PRK10684  267 TLLEALESNKVPVVAACRAGVCGCCKTKVVSGEY--TVSSTMTLTPAEIAQGYVLACSCHPQGDLVL 331
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
22-87 2.26e-07

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 46.64  E-value: 2.26e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752459969  22 LLDASNRQGVKIPYACKGGGCGLCKVKIEEGEYfRKKMSMAtLPESERELNYTLACKTYPRSNLTV 87
Cdd:PRK05713   19 LLDALNAAGVAVPYSCRAGSCHACLVRCLQGEP-EDALPEA-LAAEKREQGWRLACQCRVVGDLRV 82
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
17-53 2.09e-04

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 36.63  E-value: 2.09e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 1752459969 17 DENESLLDASNRQGVKIPYACKGGGCGLCKVKIEEGE 53
Cdd:PRK10713  17 DEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQ 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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