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Conserved domains on  [gi|1754678613|ref|WP_150751578|]
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MULTISPECIES: DUF4952 domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4952 super family cl24778
Domian of unknown function (DUF4952); This family consists of several uncharacterized proteins ...
 17-91 2.50e-19

Domian of unknown function (DUF4952); This family consists of several uncharacterized proteins around 150 residues in length and is mainly found in various Leptospira, Pseudomonas, Stenotrophomonas and Desulfovibrio species. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam16310:

Pssm-ID: 374481  Cd Length: 77  Bit Score: 76.24  E-value: 2.50e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1754678613  17 IANSASADFGCDDFLSKLADKPSFVEFKGCTQALDRMGQPFSASYEVSGANASKAEQYLEQHFGISPITRACCVW 91
Cdd:pfam16310   3 IAAPAKLKFGCADFLERIHIKPKHLEFIECEKDKDQQGKPLQARYQVAGAFAAAVEAFFEHAAGLPHLKHICCIW 77
 
Name Accession Description Interval E-value
DUF4952 pfam16310
Domian of unknown function (DUF4952); This family consists of several uncharacterized proteins ...
 17-91 2.50e-19

Domian of unknown function (DUF4952); This family consists of several uncharacterized proteins around 150 residues in length and is mainly found in various Leptospira, Pseudomonas, Stenotrophomonas and Desulfovibrio species. The function of this family is unknown.


Pssm-ID: 374481  Cd Length: 77  Bit Score: 76.24  E-value: 2.50e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1754678613  17 IANSASADFGCDDFLSKLADKPSFVEFKGCTQALDRMGQPFSASYEVSGANASKAEQYLEQHFGISPITRACCVW 91
Cdd:pfam16310   3 IAAPAKLKFGCADFLERIHIKPKHLEFIECEKDKDQQGKPLQARYQVAGAFAAAVEAFFEHAAGLPHLKHICCIW 77
 
Name Accession Description Interval E-value
DUF4952 pfam16310
Domian of unknown function (DUF4952); This family consists of several uncharacterized proteins ...
 17-91 2.50e-19

Domian of unknown function (DUF4952); This family consists of several uncharacterized proteins around 150 residues in length and is mainly found in various Leptospira, Pseudomonas, Stenotrophomonas and Desulfovibrio species. The function of this family is unknown.


Pssm-ID: 374481  Cd Length: 77  Bit Score: 76.24  E-value: 2.50e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1754678613  17 IANSASADFGCDDFLSKLADKPSFVEFKGCTQALDRMGQPFSASYEVSGANASKAEQYLEQHFGISPITRACCVW 91
Cdd:pfam16310   3 IAAPAKLKFGCADFLERIHIKPKHLEFIECEKDKDQQGKPLQARYQVAGAFAAAVEAFFEHAAGLPHLKHICCIW 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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