NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1768799313|ref|WP_152191770|]
View 

heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein [Georgenia satyanarayanai]

Protein Classification

DUF418 domain-containing protein( domain architecture ID 709254)

DUF418 domain-containing protein such as Bacillus subtilis uncharacterized protein YrkO and YxaH, which may be involved in transport

Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
YeiB super family cl28695
Uncharacterized membrane protein YeiB [Function unknown];
38-250 1.04e-14

Uncharacterized membrane protein YeiB [Function unknown];


The actual alignment was detected with superfamily member COG2311:

Pssm-ID: 441885 [Multi-domain]  Cd Length: 389  Bit Score: 75.33  E-value: 1.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313  38 RAPRVVALDIARGIAVLGMAAAH------TAALPGALRWDEPATWVD---------LVNGRSSILFAVLAGISIAIMTGR 102
Cdd:COG2311    10 PSERILALDALRGFALLGILLVNiplfalPFAAYLNPAAPGPPSGLDrvvwallflLVDGKFYPLFALLFGAGLALQLRR 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 103 TRiptgAELGHARLRLVARGLVIFAIGLVLELLGTSiAVILTFYGAVYAVAVLFVGMRVSRVLLWAAALAVAGPALVAGL 182
Cdd:COG2311    90 AE----RRGRDFRRLYLRRLLWLLLFGLLHAVLLWP-GDILLAYALLGLLLLLLRRLSPRTLLIWAAVLLLLGLLLLLLL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 183 M-----------------ALALWSSGSGVGFVL-----------EGTYSIVVWTALMLAGLAVGRLDV---------TRK 225
Cdd:COG2311   165 GyaltagpaeaaaaglaaAIAAYASGSYLEALAfrltelglllfLLLGRGPPVLGLFLLGMALGRRGLlegperhrrLLR 244
                         250       260
                  ....*....|....*....|....*
gi 1768799313 226 RTMALTLAVGTVLSAVGYTAGALWA 250
Cdd:COG2311   245 RLAVIGLAVGLPLALLGLLLPSLLL 269
 
Name Accession Description Interval E-value
YeiB COG2311
Uncharacterized membrane protein YeiB [Function unknown];
38-250 1.04e-14

Uncharacterized membrane protein YeiB [Function unknown];


Pssm-ID: 441885 [Multi-domain]  Cd Length: 389  Bit Score: 75.33  E-value: 1.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313  38 RAPRVVALDIARGIAVLGMAAAH------TAALPGALRWDEPATWVD---------LVNGRSSILFAVLAGISIAIMTGR 102
Cdd:COG2311    10 PSERILALDALRGFALLGILLVNiplfalPFAAYLNPAAPGPPSGLDrvvwallflLVDGKFYPLFALLFGAGLALQLRR 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 103 TRiptgAELGHARLRLVARGLVIFAIGLVLELLGTSiAVILTFYGAVYAVAVLFVGMRVSRVLLWAAALAVAGPALVAGL 182
Cdd:COG2311    90 AE----RRGRDFRRLYLRRLLWLLLFGLLHAVLLWP-GDILLAYALLGLLLLLLRRLSPRTLLIWAAVLLLLGLLLLLLL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 183 M-----------------ALALWSSGSGVGFVL-----------EGTYSIVVWTALMLAGLAVGRLDV---------TRK 225
Cdd:COG2311   165 GyaltagpaeaaaaglaaAIAAYASGSYLEALAfrltelglllfLLLGRGPPVLGLFLLGMALGRRGLlegperhrrLLR 244
                         250       260
                  ....*....|....*....|....*
gi 1768799313 226 RTMALTLAVGTVLSAVGYTAGALWA 250
Cdd:COG2311   245 RLAVIGLAVGLPLALLGLLLPSLLL 269
HGSNAT_cat pfam07786
Heparan-alpha-glucosaminide N-acetyltransferase, catalytic; This entry includes the catalytic ...
41-220 2.68e-05

Heparan-alpha-glucosaminide N-acetyltransferase, catalytic; This entry includes the catalytic domain of HGSNAT (Heparan-alpha-glucosaminide N-acetyltransferase). It contains the conserved histidine in the active site (His269), thought to hold the acetyl group during the transfer across the membrane and required for its enzymatic activity. HGSNAT transfers an acetyl group from cytoplasmically derived acetyl-CoA to terminal N-glucosamine residues of heparan sulfate within the lysosomes.


Pssm-ID: 377915  Cd Length: 222  Bit Score: 45.29  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313  41 RVVALDIARGIAVLGMAAAHTAALPGALRWDEPATWVDL-VNGRSSI--LFAVLAGISIAIMTGRTRiptgaelghARLR 117
Cdd:pfam07786   1 RYWEIDALRGIALILMIIFHFLWDLEFFGYLDVDLTSGFwVYFARLIasLFLFIAGISLVLAHGRGL---------RWRK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 118 LVARGLVIFAIGLVLElLGTSIAV--------ILTFYGAVYAVAVLFVgmRVSRVLLWAAALAVAGPALVAGLMALA--- 186
Cdd:pfam07786  72 FLKRGLKIFAAALLIT-AATYIAFpdsfiyfgILHFIGLASLLGLLFL--RLPKWLLLLGALLFLALGLFLRSPTFDtpl 148
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1768799313 187 -LWSSGSGVGFVLEGTYSIVVWTALMLAGLAVGRL 220
Cdd:pfam07786 149 lLWLGLSPLPFRTLDYFPLFPWFGVVLLGIALGRL 183
 
Name Accession Description Interval E-value
YeiB COG2311
Uncharacterized membrane protein YeiB [Function unknown];
38-250 1.04e-14

Uncharacterized membrane protein YeiB [Function unknown];


Pssm-ID: 441885 [Multi-domain]  Cd Length: 389  Bit Score: 75.33  E-value: 1.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313  38 RAPRVVALDIARGIAVLGMAAAH------TAALPGALRWDEPATWVD---------LVNGRSSILFAVLAGISIAIMTGR 102
Cdd:COG2311    10 PSERILALDALRGFALLGILLVNiplfalPFAAYLNPAAPGPPSGLDrvvwallflLVDGKFYPLFALLFGAGLALQLRR 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 103 TRiptgAELGHARLRLVARGLVIFAIGLVLELLGTSiAVILTFYGAVYAVAVLFVGMRVSRVLLWAAALAVAGPALVAGL 182
Cdd:COG2311    90 AE----RRGRDFRRLYLRRLLWLLLFGLLHAVLLWP-GDILLAYALLGLLLLLLRRLSPRTLLIWAAVLLLLGLLLLLLL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 183 M-----------------ALALWSSGSGVGFVL-----------EGTYSIVVWTALMLAGLAVGRLDV---------TRK 225
Cdd:COG2311   165 GyaltagpaeaaaaglaaAIAAYASGSYLEALAfrltelglllfLLLGRGPPVLGLFLLGMALGRRGLlegperhrrLLR 244
                         250       260
                  ....*....|....*....|....*
gi 1768799313 226 RTMALTLAVGTVLSAVGYTAGALWA 250
Cdd:COG2311   245 RLAVIGLAVGLPLALLGLLLPSLLL 269
HGSNAT_cat pfam07786
Heparan-alpha-glucosaminide N-acetyltransferase, catalytic; This entry includes the catalytic ...
41-220 2.68e-05

Heparan-alpha-glucosaminide N-acetyltransferase, catalytic; This entry includes the catalytic domain of HGSNAT (Heparan-alpha-glucosaminide N-acetyltransferase). It contains the conserved histidine in the active site (His269), thought to hold the acetyl group during the transfer across the membrane and required for its enzymatic activity. HGSNAT transfers an acetyl group from cytoplasmically derived acetyl-CoA to terminal N-glucosamine residues of heparan sulfate within the lysosomes.


Pssm-ID: 377915  Cd Length: 222  Bit Score: 45.29  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313  41 RVVALDIARGIAVLGMAAAHTAALPGALRWDEPATWVDL-VNGRSSI--LFAVLAGISIAIMTGRTRiptgaelghARLR 117
Cdd:pfam07786   1 RYWEIDALRGIALILMIIFHFLWDLEFFGYLDVDLTSGFwVYFARLIasLFLFIAGISLVLAHGRGL---------RWRK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768799313 118 LVARGLVIFAIGLVLElLGTSIAV--------ILTFYGAVYAVAVLFVgmRVSRVLLWAAALAVAGPALVAGLMALA--- 186
Cdd:pfam07786  72 FLKRGLKIFAAALLIT-AATYIAFpdsfiyfgILHFIGLASLLGLLFL--RLPKWLLLLGALLFLALGLFLRSPTFDtpl 148
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1768799313 187 -LWSSGSGVGFVLEGTYSIVVWTALMLAGLAVGRL 220
Cdd:pfam07786 149 lLWLGLSPLPFRTLDYFPLFPWFGVVLLGIALGRL 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH