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Conserved domains on  [gi|1783262757|ref|WP_156318420|]
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tetratricopeptide repeat protein [Campylobacter showae]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11434433)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
207-451 1.30e-30

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 118.49  E-value: 1.30e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 207 EAGFAQDIKAARSYYGKACAVNAYKCGGSERLDELYGGWAQYQSGQFEAAYELGKESCARGVANGCAALGELYAKGLGgV 286
Cdd:COG0790     1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRG-V 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 287 RQDSKQAVKFHEKACEGSFGASCAKLGEMLSQGRDVKKDVSRALELFEKACLLWRLDACESLADAYFEGVDVPQDIAKAF 366
Cdd:COG0790    80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 367 NFYGIACYNGLKPACTNLGAIYEKGIGeaVKADASEAASLFSEACEADDARGCLNIARHLEsnDKKQAAALRQKAQKLHE 446
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGRG--VPKDPAKALEWYRKAAEQGDADAQYNLGRLYL--NGEGVEKDLEKALRWLR 235


                  ....*
gi 1783262757 447 KECEA 451
Cdd:COG0790   236 KAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
22-302 1.07e-27

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 110.79  E-value: 1.07e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757  22 EGQTAYDAGDEQKEAQIWQKACKKGEARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAGelsgcdslaslhqnsgeHA 101
Cdd:COG0790    37 AAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQG-----------------DA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 102 KAaaiferacekgfglsCYNLAQIYEAGLGVAPDESKALDLYVKACERGYTVVCYYLGGMYADGWVSENDEAaksskKAL 181
Cdd:COG0790   100 EA---------------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPA-----KAA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 182 KFYSLACDGKIYEACEALGRLYEDGEaGFAQDIKAARSYYGKAcavnaykcggserldelyggwaqyqsgqfeaayelgk 261
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGR-GVPKDPAKALEWYRKA------------------------------------- 201

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1783262757 262 esCARGVANGCAALGELYAKGLgGVRQDSKQAVKFHEKACE 302
Cdd:COG0790   202 --AEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAE 239
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
207-451 1.30e-30

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 118.49  E-value: 1.30e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 207 EAGFAQDIKAARSYYGKACAVNAYKCGGSERLDELYGGWAQYQSGQFEAAYELGKESCARGVANGCAALGELYAKGLGgV 286
Cdd:COG0790     1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRG-V 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 287 RQDSKQAVKFHEKACEGSFGASCAKLGEMLSQGRDVKKDVSRALELFEKACLLWRLDACESLADAYFEGVDVPQDIAKAF 366
Cdd:COG0790    80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 367 NFYGIACYNGLKPACTNLGAIYEKGIGeaVKADASEAASLFSEACEADDARGCLNIARHLEsnDKKQAAALRQKAQKLHE 446
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGRG--VPKDPAKALEWYRKAAEQGDADAQYNLGRLYL--NGEGVEKDLEKALRWLR 235


                  ....*
gi 1783262757 447 KECEA 451
Cdd:COG0790   236 KAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
22-302 1.07e-27

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 110.79  E-value: 1.07e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757  22 EGQTAYDAGDEQKEAQIWQKACKKGEARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAGelsgcdslaslhqnsgeHA 101
Cdd:COG0790    37 AAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQG-----------------DA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 102 KAaaiferacekgfglsCYNLAQIYEAGLGVAPDESKALDLYVKACERGYTVVCYYLGGMYADGWVSENDEAaksskKAL 181
Cdd:COG0790   100 EA---------------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPA-----KAA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 182 KFYSLACDGKIYEACEALGRLYEDGEaGFAQDIKAARSYYGKAcavnaykcggserldelyggwaqyqsgqfeaayelgk 261
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGR-GVPKDPAKALEWYRKA------------------------------------- 201

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1783262757 262 esCARGVANGCAALGELYAKGLgGVRQDSKQAVKFHEKACE 302
Cdd:COG0790   202 --AEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAE 239
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 48-82 9.14e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.55  E-value: 9.14e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1783262757   48 ARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAG 82
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 48-82 1.36e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.04  E-value: 1.36e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1783262757  48 ARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAG 82
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 307-339 4.77e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 34.80  E-value: 4.77e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1783262757 307 ASCAKLGEMLSQGRDVKKDVSRALELFEKACLL 339
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAEL 34
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
207-451 1.30e-30

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 118.49  E-value: 1.30e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 207 EAGFAQDIKAARSYYGKACAVNAYKCGGSERLDELYGGWAQYQSGQFEAAYELGKESCARGVANGCAALGELYAKGLGgV 286
Cdd:COG0790     1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRG-V 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 287 RQDSKQAVKFHEKACEGSFGASCAKLGEMLSQGRDVKKDVSRALELFEKACLLWRLDACESLADAYFEGVDVPQDIAKAF 366
Cdd:COG0790    80 PKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 367 NFYGIACYNGLKPACTNLGAIYEKGIGeaVKADASEAASLFSEACEADDARGCLNIARHLEsnDKKQAAALRQKAQKLHE 446
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGRG--VPKDPAKALEWYRKAAEQGDADAQYNLGRLYL--NGEGVEKDLEKALRWLR 235


                  ....*
gi 1783262757 447 KECEA 451
Cdd:COG0790   236 KAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
22-302 1.07e-27

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 110.79  E-value: 1.07e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757  22 EGQTAYDAGDEQKEAQIWQKACKKGEARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAGelsgcdslaslhqnsgeHA 101
Cdd:COG0790    37 AAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQG-----------------DA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 102 KAaaiferacekgfglsCYNLAQIYEAGLGVAPDESKALDLYVKACERGYTVVCYYLGGMYADGWVSENDEAaksskKAL 181
Cdd:COG0790   100 EA---------------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPA-----KAA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 182 KFYSLACDGKIYEACEALGRLYEDGEaGFAQDIKAARSYYGKAcavnaykcggserldelyggwaqyqsgqfeaayelgk 261
Cdd:COG0790   160 EWYRKAAEQGDADAQYNLGVLYENGR-GVPKDPAKALEWYRKA------------------------------------- 201

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1783262757 262 esCARGVANGCAALGELYAKGLgGVRQDSKQAVKFHEKACE 302
Cdd:COG0790   202 --AEQGDADAQYNLGRLYLNGE-GVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
101-373 5.01e-26

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 106.17  E-value: 5.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 101 AKAAAIFERACEKGFGLSCYNLAQIYEAGLGVAPDESKALDLYVKACERGYTVVCYYLGGMYADGWVSENDEAaksskKA 180
Cdd:COG0790    12 AAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYE-----KA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 181 LKFYSLACDGKIYEACEALGRLYEDGEaGFAQDIKAARSYYGKAcavnaykcggserldelyggwaqyqsgqfeaayelg 260
Cdd:COG0790    87 LEWFEKAAEQGDAEAQYNLGLMYEEGL-GVPQDYAKALEWYEKA------------------------------------ 129

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 261 kesCARGVANGCAALGELYAKGLgGVRQDSKQAVKFHEKACEGSFGASCAKLGEMLSQGRDVKKDVSRALELFEKACLLW 340
Cdd:COG0790   130 ---AEQGDADAQYNLGLLYLNGE-GVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1783262757 341 RLDACESLADAYFEGVDVPQDIAKAFNFYGIAC 373
Cdd:COG0790   206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAA 238
TPR COG0790
TPR repeat [General function prediction only];
197-413 1.27e-25

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 105.01  E-value: 1.27e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 197 EALGRLYEDGEAGFAQDIKAARSYYGKACAVNAYKCGGSERLDELYGGWAQYQSGQ-----------FEAAYELGKESCA 265
Cdd:COG0790    16 AALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLmyaegrgvpkdYEKALEWFEKAAE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 266 RGVANGCAALGELYAKGLGgVRQDSKQAVKFHEKACEGSFGASCAKLGEMLSQGRDVKKDVSRALELFEKACLLWRLDAC 345
Cdd:COG0790    96 QGDAEAQYNLGLMYEEGLG-VPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQ 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1783262757 346 ESLADAYFEGVDVPQDIAKAFNFYGIACYNGLKPACTNLGAIYEKGIGeaVKADASEAASLFSEACEA 413
Cdd:COG0790   175 YNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEG--VEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
31-149 4.78e-21

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 91.91  E-value: 4.78e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757  31 DEQKEAQIWQKACKKGEARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAGELSGCDSLASLHQN----SGEHAKAAAI 106
Cdd:COG0790   118 DYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENgrgvPKDPAKALEW 197

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1783262757 107 FERACEKGFGLSCYNLAQIYEAGLGVAPDESKALDLYVKACER 149
Cdd:COG0790   198 YRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 48-82 9.14e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.55  E-value: 9.14e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1783262757   48 ARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAG 82
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 116-151 1.78e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.39  E-value: 1.78e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1783262757  116 GLSCYNLAQIYEAGLGVAPDESKALDLYVKACERGY 151
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 48-82 1.36e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.04  E-value: 1.36e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1783262757  48 ARGCVRLGFLYQSGKGVEQDDTKAAKFYEKACDAG 82
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 118-150 4.24e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 37.50  E-value: 4.24e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1783262757 118 SCYNLAQIYEAGLGVAPDESKALDLYVKACERG 150
Cdd:pfam08238   3 AQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 307-339 4.77e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 34.80  E-value: 4.77e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1783262757 307 ASCAKLGEMLSQGRDVKKDVSRALELFEKACLL 339
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAEL 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 70-302 5.61e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 5.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757  70 KAAKFYEKA--CDAGELSGCDSLASLHQNSGEHAKAAAIFERACEKG--FGLSCYNLAQIYEAglgvAPDESKALDLYVK 145
Cdd:COG2956    26 KAIDLLEEAleLDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpdRAEALLELAQDYLK----AGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 146 ACER--GYTVVCYYLGGMYADgwVSENDEAAKSSKKALKfyslACDGKIYEACEaLGRLYEDgeagfAQDIKAARSYYGK 223
Cdd:COG2956   102 LLELdpDDAEALRLLAEIYEQ--EGDWEKAIEVLERLLK----LGPENAHAYCE-LAELYLE-----QGDYDEAIEALEK 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783262757 224 ACAVNAYKCGGSERLDELYggwaqYQSGQFEAAYELGKESCARGVANGCAA--LGELYAKglggvRQDSKQAVKFHEKAC 301
Cdd:COG2956   170 ALKLDPDCARALLLLAELY-----LEQGDYEEAIAALERALEQDPDYLPALprLAELYEK-----LGDPEEALELLRKAL 239


                  .
gi 1783262757 302 E 302
Cdd:COG2956   240 E 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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