|
Name |
Accession |
Description |
Interval |
E-value |
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
60-773 |
0e+00 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 542.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 60 ALLVSSTGYIALKQDVVVFAGKTVnhnlqlSGDQRQLEEITITGTGSQ---YKTSISSLATRTDAPLLEVPQSVQVISHQ 136
Cdd:COG4773 2 AALLAGSGLAAAAAGALAQAAAAA------AAEATTLPEVTVTGTAEGtggYTAKSSSTATKLDTPLRETPQSVSVVTRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 137 IIKDRQAFTLNDITPLMTGVKANNSMGG----FALRGFTGYNpndasfTTFNGIRGTLYlWSQQPLLYNIENVEILRGPA 212
Cdd:COG4773 76 LIEDQGATTLDDALRNVPGVTVSSYDGGgrdsFSIRGFSIDN------YLRDGLPLGGF-GGGQPDTANLERVEVLKGPA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 213 SALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRLLYRLIVGYDRTNSFRDYQKVKNFFLA 292
Cdd:COG4773 149 GLLYGAGSPGGLVNLVTKRPTAEPQGEVSLSAGSWDTYRATADVGGPLNEDGTLRYRLNAAYEDGDSFRDGVDNRRTLIA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 293 PSLSYNFAPGTSLNLEvnYAYQRAVQQYDRGRYVksnADGTfdFDYYPKNVTVQSPSDFGKTKNSSATLTFTHQAGSGLT 372
Cdd:COG4773 229 PSLDWDLTDDTTLTLG--AEYQDDDSTGDRGFLP---LDGT--LLDLPRSTNLGEPWDYYDTETTTLFAELEHRFNDDWS 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 373 FSFVQRYVRSKFNFADHFVSGAIRND--SISRSYSYWDYDQFNAQTTAFANYKISTGKVRHSLLGGVDYNRfgwYKNDYR 450
Cdd:COG4773 302 LRANARYSDSDRDGRSAYAYGAPDAAtgTLTRYASARDGDSRSDSLDANLNGKFETGGLEHTLLVGADYSR---YDSDSD 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 451 SSPTTRISILHPDYSNDVPPVNPKVDYYDDNEQatnlIGGYLQDQISFGEKFKALLSLRYDHYRLKQTplsERDDLQGDE 530
Cdd:COG4773 379 SATAGTINIYNPVYGNLPEPDFDASDTDTTTRQ----TGLYAQDQISLTDRLSLLLGGRYDWYETDST---NRLGGSTTS 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 531 SAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQlSNNGGAGGPFPPRTSEQFEVGYKGDFFKKILSTMVAVYNIDYKNIL 610
Cdd:COG4773 452 YDDSAFTPRAGLVYDLTPGLSLYASYSESFEPQ-SGADNNGNPLDPETGKQYEAGVKGELFDGRLNATLAVFDITQKNVA 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 611 APNPTaaNPNQQTVVRGTRSRGAEITIQGNI-KTLSIITGYAFNDHVLTSTSSiGKEGFRYVNAPKHIANVMLKYNLTNG 689
Cdd:COG4773 531 TTDPD--NPNFYVQVGEVRSRGVELELSGELtPGLNLIAGYTYTDAKITKDAD-ALEGKRLTNVPRHTASLWTTYRFPSG 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 690 VLQGLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAG-RYNVQFNVYNFTNANYYNGGLSRVTVAsLGNPINFR 768
Cdd:COG4773 608 ALKGLGLGGGVRYVGERYGD-AANTFTLPSYTLVDAGARYDLGkNWTLQLNVNNLFDKKYYASSGSRGYVY-YGAPRNVR 685
|
....*
gi 1786407605 769 VGVSY 773
Cdd:COG4773 686 LSLSY 690
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
129-773 |
1.18e-72 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 249.29 E-value: 1.18e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 129 SVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG----FALRGFTGYNPNdasfTTFNGIRGTLYLWSQQPLLY---- 200
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGggstISIRGFGPDRTL----VLVDGLPLASSNYGRGVDLNtipp 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 201 -NIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSW---NAARFSVDATGPLNKSKRLLYRLIVGYDR 276
Cdd:cd01347 77 eLIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDnsgSSGGGGFDVSGALADDGAFGARLYGAYRD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 277 TNSF------RDYQKVKNFFLAPSLSYNFAPGTSLNLEVNYAYQRavQQYDRGRYVKSNADGTFDFDYYPKNVTVQSPSD 350
Cdd:cd01347 157 GDGTidgdgqADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQD--ADGPGGTLPANGTGSSLGGGPSSNTNGDRDWDY 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 351 FgKTKNSSATLTFTHQAGSG---LTFSFVQRYVRSKFNFADHFVSGAIRNDSISRSYSYWDYDQFNAQTTAFANYKISTG 427
Cdd:cd01347 235 R-DRYRKRASLGLEHDLNDTgwtLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTG 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 428 KVRHSLLGGVDYNRFGWykndyrsspttrisilhpdysndvppvnpkvdyyddneqATNLIGGYLQDQISFGEKFKALLS 507
Cdd:cd01347 314 PVAHTLTLGVEYRREEL---------------------------------------DEKQTALYAQDTIELTDDLTLTLG 354
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 508 LRYDHYRlkQTPLSERDDLQGDESAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQ-----------LSNNGGAGGPFPP 576
Cdd:cd01347 355 LRYDHYD--QDSKDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPslgelygggshGGTAAVGNPNLKP 432
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 577 RTSEQFEVGYKGDFFKKiLSTMVAVYNIDYKNILAPNPTAANPN---QQTVVRGTRSRGAEITIQGNI-KTLSIITGYAF 652
Cdd:cd01347 433 EKSKQYELGLKYDPGDG-LTLSAALFRIDIKNEIVSTPTNTGLGlvtVYVNGGKARIRGVELEASYDLtDGLGLTGSYTY 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 653 NDHVLTSTSSiGKEGFRYVNAPKHIANVMLKYNLTNgvlQGLGFGVGGRHVSEQ--VGNLATQTFIIPASTVLDAMANYE 730
Cdd:cd01347 512 TDTEVKRTDG-ATTGNRLPGIPKHTANLGLDYELPD---EGLTAGGGVRYRGKQyaDTANGNNTVKVPGYTLVDLSASYQ 587
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1786407605 731 AGR-YNVQFNVYNFTNANYY--NGGLSRVTVASLGNPINFRVGVSY 773
Cdd:cd01347 588 FTKnLTLRLGVNNLFDKDYYtsLSVRGSGLYGYYGPGRTYYLSVSY 633
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
125-773 |
2.09e-68 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 238.08 E-value: 2.09e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 125 EVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG-----FALRGFtgyNPNDASFTT-FNGIRGTLYLWSQQPL 198
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGSGGTtqfgnITIRGF---GLEVDIDNVyLDGVPLLSRGNLAIVD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 199 LYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRLLYRLIVGYDRTN 278
Cdd:TIGR01783 78 PAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGADGTFRGRLNGARQDGD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 279 SFRDYQKVKNFFLAPSLSYNFAPGTSLNLEVNYAYQRAVQQY-----DRGRYVKSNaDGTFDFDYYPKNVTVqspsdfgK 353
Cdd:TIGR01783 158 SFYDGAGEETRLGATATDWQLDDRTLLRLGAYYQKERDRGGYgglpaSGGTSGRDL-SSDRYLGTSSNRNYD-------D 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 354 TKNSSATLTFTHQAGSGLTFSFVQRYVRSKFNFADHFVSGAIRNDS-ISRSYSYWDYDQFNAQTTAFANYKISTGKVRHS 432
Cdd:TIGR01783 230 REYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSDGGlFGRSLTVVNVKQDRVQIDAGLDGEFETGPIEHD 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 433 LLGGVDYNRFGwyKNDYRSSPTTRISILHPDYSNDVPPVNPKVDYYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYDH 512
Cdd:TIGR01783 310 LLLGVSYGQRT--TNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKALNGVALQRILLADKWTLTLGGRYDS 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 513 YRLKQTPlseRDDLQGDESAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQLSNNGGA---GGPFPPRTSEQFEVGYKGD 589
Cdd:TIGR01783 388 VDVKSNN---GVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYPKGAgnsGDILEPEKGKNYELGVRYD 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 590 FFKKILSTMvAVYNIDYKNilapNPTAANPNQQTVVRG--TRSRGAEITIQGNIKT-LSIITGYAFNDHVLTSTSSIGKE 666
Cdd:TIGR01783 465 LGDSLLATA-ALFRITKDN----QLVQDPVNGTFSVNAgkTRNRGVELEARGYLTPgLSLSAGYTYTDAEFTEDTNGDTQ 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 667 GFRYVNAPKHIANVMLKYNLTNGVLQgLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAGRY---NVQFNVYNF 743
Cdd:TIGR01783 540 GNTVPFVPKHTASLWASYAPPVGDNG-LTLGGGVQYTGKAYVD-GGNTGKVPSYTVVDLSVRYDLTKKknlTLALNVNNL 617
|
650 660 670
....*....|....*....|....*....|..
gi 1786407605 744 TNANYYNGGLSRVTVASL--GNPINFRVGVSY 773
Cdd:TIGR01783 618 FDRDYYTSGYRWGPSAYIypGAPRTVGLSVSY 649
|
|
| PRK14050 |
PRK14050 |
TonB-dependent siderophore receptor; |
91-751 |
2.89e-54 |
|
TonB-dependent siderophore receptor;
Pssm-ID: 237595 [Multi-domain] Cd Length: 728 Bit Score: 200.03 E-value: 2.89e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 91 GDQRQLEEITITGTGSQYKTSI----------SSLATRTDAPLLEVPQSVQVISHQIIKDRQAFTLND----ITPLMTG- 155
Cdd:PRK14050 34 GNTTQLETIVVEGGNAASATATgpvdgyvakaTATGSKTDTPITEIPQSVSVVGRQEMDDRGVTNKVDealrYTPGVLSq 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 156 -VKANNSMGGFALRGFtgynpnDASFTT--FNGirgtLYLWSQ-----QPLLYNIENVEILRGPASALLSESMPGGIINF 227
Cdd:PRK14050 114 pFGTDGDTDWFYIRGF------DATQTGvfLDG----LNLFSYgfggfQIDPFMLERVEVLKGPASVLYGGSNPGGIVNM 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 228 VTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRLLYRL---IVGYDrtnSFRDYQKVKNFFLAPSLSYNFAPGTS 304
Cdd:PRK14050 184 VSKRPLDEPLYYTEIGINSYGNAFTGFDVGDKLSDDGTVRYRVtgkVAGGD---NYSDYSEDLRGFIMPQITYAPDDATS 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 305 LNLevnYAYQRAVQQYDRGR----YVKSNADGTF---DFDYYpknvTVQSPSDFGKTKNSSATLTFTHQAGSGLTFSFVQ 377
Cdd:PRK14050 261 LTV---YGYLSGLDQVHVGNgflpYVGTVVDAPFgkiDRDAF----YGEPDIDNGSYAQQMLGYEFSHEFDNGWTFSQNA 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 378 RY----VRSKFNFADHFVSGAIRNDSISRSYSYWDYDQFNAQTT--AF-----ANYKISTGKVRHSLLGGVDYNrfgWYK 446
Cdd:PRK14050 334 RYghlhKHEKGPYTYGYVGGATGLPDPTGPDYMLNRIGFEHRSKvdSFsidnrLEGEFDTGALTHNLLFGLDYK---YYR 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 447 NDY--RSSPTTRISILHPDYSNDVPPVNPkvdyYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYDHYRLKQTPLSErD 524
Cdd:PRK14050 411 LDQvqACCGATPISATNPVYGTTQGANFV----YLDQILTQQQIGIYAQDQIRFGDGWLVTLNGRYDYVDTDSDARIG-T 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 525 DLQGDESAAKAwvpRIGLVYVPVSNLSFYGSYNRSFAPQLsNNGGAGGPFPPRTSEQFEVG--YKGDFFKKILSTmvAVY 602
Cdd:PRK14050 486 SYESNDGALSG---RAGLAYEFDNGLTPYVSAATFFNPLV-GTLASGPPLKPEEGEQYEAGikYEPSFIDGLITA--SVF 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 603 NIDYKNILAPNPTAANPNQQTVVrgtRSRGAEITIQGNIKT-LSIITGYAFNDHVLTSTSSIGKEGFRYVNAPKHIANVM 681
Cdd:PRK14050 560 QITKKNVTVTDPLTFASTQLGEV---RSRGFELEGKVNLDDnWKALASFTYTDLEITEDANPSLIGNSPYLVPETQASLW 636
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 682 LKYNLTNGVLQGLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAGRYNVQFNVYNFTNANYYNG 751
Cdd:PRK14050 637 LDYAVTDGAFEGVSLGAGVRYQGESWAD-EANTLKVPAATLFDAAIRYEKNDWGASLNVANLFDKEYVAG 705
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
310-773 |
2.88e-38 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 149.15 E-value: 2.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 310 NYAYQRAVQQYDRGRYVKSNADGTFDFDYYPKNVTVQSPSDFGKTKNSSATLTFTHQAGSGLTFSfvqRYVRSKFNFADH 389
Cdd:pfam00593 14 LLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWL---STLRLGLRYSSL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 390 FVSGAIRNDSISRSYSYWDYDQFNAQTTAFANYKISTGKVRHSLLGGVDYNRFGWYKNdyrsspttrisiLHPDYSNDVP 469
Cdd:pfam00593 91 DGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRTAGLDYRR------------LDDDAYDPYD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 470 PVNPKVDYYDDNEQATnlIGGYLQDQISFGEKFKALLSLRYDHYRLKQTPLSERDDlqGDESAAKAWVPRIGLVYVPVSN 549
Cdd:pfam00593 159 PANPSSSSYSDTTTDS--YGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGD--NFSRSYSAFSPRLGLVYKPTDN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 550 LSFYGSYNRSF-APQLSNNGGAGGP------------FPPRTSEQFEVGYKgdFFKKILSTMVAVYNIDYKNILAPNPTA 616
Cdd:pfam00593 235 LSLYASYSRGFrAPSLGELYGSGSGggggavaggnpdLKPETSDNYELGLK--YDDGRLSLSLALFYIDIKNLITSDPDG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 617 ANPNQQTVVRG----TRSRGAEITIQGNI-KTLSIITGYAFNDHvlTSTSSIGKEGFRYVNAPKHIANVMLKYNLTNGvl 691
Cdd:pfam00593 313 PGLGGTVYTYTnvgkARIRGVELELSGRLwGLGLSGGGYTYTDA--DDDADADDTGNPLPNVPRHTANLGLTYDFPLG-- 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 692 qGLGFGVGGRHV--SEQVGNLATQTFIIPASTVLDAMANYEAG-RYNVQFNVYNFTNANY--YNGGLSRVTVASLGNPIN 766
Cdd:pfam00593 389 -GWGARLGARYVgsGERRYGDAANTFKTPGYTLVDLSAGYRLNkNLTLRLGVNNLFDKYYkrYYSSGGGNLGGYPGPGRT 467
|
....*..
gi 1786407605 767 FRVGVSY 773
Cdd:pfam00593 468 FYLGLSY 474
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
15-101 |
1.14e-16 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 75.71 E-value: 1.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 15 LTGHIISFE-NAPLSQVNVRIQDSEFATYTNESGYFMLKNIPAGKYALLVSSTGYIALKQDVVVFAGKTVNHNLQLSGDQ 93
Cdd:pfam13715 1 ISGTVVDENtGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDA 80
|
....*...
gi 1786407605 94 RQLEEITI 101
Cdd:pfam13715 81 LLLDEVVV 88
|
|
| RGL4_M |
cd10316 |
Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase; The ... |
13-84 |
7.19e-03 |
|
Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase; The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
Pssm-ID: 199904 Cd Length: 92 Bit Score: 36.46 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 13 GNLTGHI-----ISFENAPLSQVNVRIQDSEFA-------TYTNESGYFMLKNIPAGKYALLVSSTGYI--ALKQDVVVF 78
Cdd:cd10316 3 GTVSGRLllpdgASAAIAVVGLANPGEQGSQFEtkgyqywTEADSDGRFTIPNVRPGTYRLTAYADGIFgyVAQDTVTVT 82
|
....*.
gi 1786407605 79 AGKTVN 84
Cdd:cd10316 83 AGGTTA 88
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
60-773 |
0e+00 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 542.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 60 ALLVSSTGYIALKQDVVVFAGKTVnhnlqlSGDQRQLEEITITGTGSQ---YKTSISSLATRTDAPLLEVPQSVQVISHQ 136
Cdd:COG4773 2 AALLAGSGLAAAAAGALAQAAAAA------AAEATTLPEVTVTGTAEGtggYTAKSSSTATKLDTPLRETPQSVSVVTRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 137 IIKDRQAFTLNDITPLMTGVKANNSMGG----FALRGFTGYNpndasfTTFNGIRGTLYlWSQQPLLYNIENVEILRGPA 212
Cdd:COG4773 76 LIEDQGATTLDDALRNVPGVTVSSYDGGgrdsFSIRGFSIDN------YLRDGLPLGGF-GGGQPDTANLERVEVLKGPA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 213 SALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRLLYRLIVGYDRTNSFRDYQKVKNFFLA 292
Cdd:COG4773 149 GLLYGAGSPGGLVNLVTKRPTAEPQGEVSLSAGSWDTYRATADVGGPLNEDGTLRYRLNAAYEDGDSFRDGVDNRRTLIA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 293 PSLSYNFAPGTSLNLEvnYAYQRAVQQYDRGRYVksnADGTfdFDYYPKNVTVQSPSDFGKTKNSSATLTFTHQAGSGLT 372
Cdd:COG4773 229 PSLDWDLTDDTTLTLG--AEYQDDDSTGDRGFLP---LDGT--LLDLPRSTNLGEPWDYYDTETTTLFAELEHRFNDDWS 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 373 FSFVQRYVRSKFNFADHFVSGAIRND--SISRSYSYWDYDQFNAQTTAFANYKISTGKVRHSLLGGVDYNRfgwYKNDYR 450
Cdd:COG4773 302 LRANARYSDSDRDGRSAYAYGAPDAAtgTLTRYASARDGDSRSDSLDANLNGKFETGGLEHTLLVGADYSR---YDSDSD 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 451 SSPTTRISILHPDYSNDVPPVNPKVDYYDDNEQatnlIGGYLQDQISFGEKFKALLSLRYDHYRLKQTplsERDDLQGDE 530
Cdd:COG4773 379 SATAGTINIYNPVYGNLPEPDFDASDTDTTTRQ----TGLYAQDQISLTDRLSLLLGGRYDWYETDST---NRLGGSTTS 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 531 SAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQlSNNGGAGGPFPPRTSEQFEVGYKGDFFKKILSTMVAVYNIDYKNIL 610
Cdd:COG4773 452 YDDSAFTPRAGLVYDLTPGLSLYASYSESFEPQ-SGADNNGNPLDPETGKQYEAGVKGELFDGRLNATLAVFDITQKNVA 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 611 APNPTaaNPNQQTVVRGTRSRGAEITIQGNI-KTLSIITGYAFNDHVLTSTSSiGKEGFRYVNAPKHIANVMLKYNLTNG 689
Cdd:COG4773 531 TTDPD--NPNFYVQVGEVRSRGVELELSGELtPGLNLIAGYTYTDAKITKDAD-ALEGKRLTNVPRHTASLWTTYRFPSG 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 690 VLQGLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAG-RYNVQFNVYNFTNANYYNGGLSRVTVAsLGNPINFR 768
Cdd:COG4773 608 ALKGLGLGGGVRYVGERYGD-AANTFTLPSYTLVDAGARYDLGkNWTLQLNVNNLFDKKYYASSGSRGYVY-YGAPRNVR 685
|
....*
gi 1786407605 769 VGVSY 773
Cdd:COG4773 686 LSLSY 690
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
118-773 |
1.60e-151 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 456.65 E-value: 1.60e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 118 RTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG----FALRGFTGYNPndasfTTFNGIRgtlyLW 193
Cdd:COG4774 1 KTDTPLLDTPQSVTVVTRELIEDQGATSLADALRNVPGVTFGAGEGGngdsFSIRGFSASGD-----IYVDGLR----DP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 194 SQQPL-LYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSkrLLYRLIV 272
Cdd:COG4774 72 GQYRRdTFNLERVEVLKGPASVLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGPLGDD--LAYRLNG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 273 GYDRTNSFRDYQKVKNFFLAPSLSYNFAPGTSLNLevNYAYQRAVQQYDRGRYVKSNADGTfdfdYYPKNVTVQSPSDFG 352
Cdd:COG4774 150 MYRDSDSYRDGVDNDRWGIAPSLTWRLGDRTRLTL--DYEYQDDDRTPDYGVPAVANGRPV----DVDRSTFYGQPDDYS 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 353 KTKNSSATLTFTHQAGSGLTFSFVQRYVRSKFNFADHFVSGAIRNDSISRSYSYWDYDQFNAQTTAFANYKISTGKVRHS 432
Cdd:COG4774 224 DSETDSATLRLEHDFNDNWTLRNALRYSDYDRDYRNTYPTGGNATGTVTRSAYRRDQDNDTLSNQTDLTGKFDTGGVKHT 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 433 LLGGVDYNRFGWYKNDYRSSPTT-RISILHPDYSNDVPPVNPkvdYYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYD 511
Cdd:COG4774 304 LLAGVEYSREDSDNARYSGGGTApTVNLYNPVYGAPVTGPTL---GGADNDSRTDTTGLYLQDTISLTDRWSLLAGLRYD 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 512 HYRLK-QTPLSERDDLQGDESaakAWVPRIGLVYVPVSNLSFYGSYNRSFAPQLSNNGG--AGGPFPPRTSEQFEVGYKG 588
Cdd:COG4774 381 RFDTDyTDRTTGATTSSYDDS---AFSPRAGLVYKPTPNLSLYASYSTSFNPGGGAPSLsnAGQALDPEKSRQYEVGVKW 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 589 DFFKKILSTMVAVYNIDYKNILAPNPTaaNPNQQTVVRGTRSRGAEITIQGNI-KTLSIITGYAFNDHVLTSTSSIGKEG 667
Cdd:COG4774 458 DLLDGRLSLTAALFRIEKTNVRTTDPA--NPGVYVQTGEQRSRGVELEATGELtPGWSVLAGYTYLDAEITKSANAANVG 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 668 FRYVNAPKHIANVMLKYNLTngvLQGLGFGVGGRHVSEQVGNLATqTFIIPASTVLDAMANYEAGR-YNVQFNVYNFTNA 746
Cdd:COG4774 536 NRLPNVPRHSASLWTTYDLP---LPGLTLGGGVRYVGSRYADAAN-TVKLPSYTRFDAGASYRLNKnLTLRLNVNNLTDK 611
|
650 660
....*....|....*....|....*..
gi 1786407605 747 NYYNGGLSRvTVASLGNPINFRVGVSY 773
Cdd:COG4774 612 RYYASAYGS-GYVTPGAPRTVLLSASY 637
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
96-752 |
2.17e-85 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 284.03 E-value: 2.17e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 96 LEEITITgtgsqyktsisslATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGV---KANNSMGGFALRGFTG 172
Cdd:COG1629 1 LEEVVVT-------------ATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVsvtSAGGGAGQISIRGFGG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 173 yNPNDASFTTfNGIRGTLYLWSQQPL----LYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWN 248
Cdd:COG1629 68 -GGNRVLVLV-DGVPLNDPSGGDGGLsyidPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 249 AARFSVDATGPLNKskrLLYRLIVGYDRTNSFRDYQKVKNFFLAPSLSYNFAPGTSLNLEVNYAYQRavqqYDRGRYVKS 328
Cdd:COG1629 146 TYRASLSLSGGNGK---LAYRLSASYRDSDGYRDNSDSDRYNLRAKLGYQLGDDTRLTLSASYSDSD----QDSPGYLTL 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 329 NAdgtFDFDYYPKNVTVQSPSDFGKTKNSSATLTFTHQA-GSGLTFSFVQRYVRSKFNFADHFVSGAIRNDSISRSYSyw 407
Cdd:COG1629 219 AA---LRPRGAMDDGTNPYSNDTDDNTRDRYSLSLEYEHlGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQTDF-- 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 408 DYDQFNAQTTAfaNYKISTGKvRHSLLGGVDYNRfgwYKNDYRSSPTtrisilhpdysNDVPPVNPKVDYYDDNEQATNL 487
Cdd:COG1629 294 DNRTYGLELRL--TYDLGFGG-KHTLLVGLDYQR---QDLDGSGYPL-----------DLGSGSLPTLTSGADDDGTTTS 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 488 IGGYLQDQISFGEKFKALLSLRYDHYRLKQTPLSERDDLQGDESAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQLSNN 567
Cdd:COG1629 357 LALYAQDTYKLTDKLTLTAGLRYDYVSYDVDDTVTGTDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGE 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 568 GGAGGPFP---------PRTSEQFEVGYKGDFFKKILSTMVAVYNIDYKNILAPNPTAANPNQQTVVR---GTRSRGAEI 635
Cdd:COG1629 437 LYANGTDPysvgnpdlkPETSTNYELGLRYRLLDGRLSLSLALFYSDVDNEILSVPLPNDSGFSTYYTnagKARSYGVEL 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 636 TIQGNI-KTLSIITGYAFNDHVLTS--TSSIGKEGFRYVNAPKHIANVMLKYNLTngvlQGLGFGVGGRHVSEQVGNLAT 712
Cdd:COG1629 517 ELSYQLtPGLSLNASYSYTDAKFDDdtDGSADLDGNRLPGVPPLTANLGLTYEFP----GGWSLGLGVRYVGDRYLDDAN 592
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1786407605 713 QTFIIPASTVLDAMANYEAG-RYNVQFNVYNFTNANYYNGG 752
Cdd:COG1629 593 TQGAPGGYTLVDLGAGYRFGdNLTLSLGVDNLFDKKYATSL 633
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
129-773 |
1.18e-72 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 249.29 E-value: 1.18e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 129 SVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG----FALRGFTGYNPNdasfTTFNGIRGTLYLWSQQPLLY---- 200
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGggstISIRGFGPDRTL----VLVDGLPLASSNYGRGVDLNtipp 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 201 -NIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSW---NAARFSVDATGPLNKSKRLLYRLIVGYDR 276
Cdd:cd01347 77 eLIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDnsgSSGGGGFDVSGALADDGAFGARLYGAYRD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 277 TNSF------RDYQKVKNFFLAPSLSYNFAPGTSLNLEVNYAYQRavQQYDRGRYVKSNADGTFDFDYYPKNVTVQSPSD 350
Cdd:cd01347 157 GDGTidgdgqADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQD--ADGPGGTLPANGTGSSLGGGPSSNTNGDRDWDY 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 351 FgKTKNSSATLTFTHQAGSG---LTFSFVQRYVRSKFNFADHFVSGAIRNDSISRSYSYWDYDQFNAQTTAFANYKISTG 427
Cdd:cd01347 235 R-DRYRKRASLGLEHDLNDTgwtLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTG 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 428 KVRHSLLGGVDYNRFGWykndyrsspttrisilhpdysndvppvnpkvdyyddneqATNLIGGYLQDQISFGEKFKALLS 507
Cdd:cd01347 314 PVAHTLTLGVEYRREEL---------------------------------------DEKQTALYAQDTIELTDDLTLTLG 354
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 508 LRYDHYRlkQTPLSERDDLQGDESAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQ-----------LSNNGGAGGPFPP 576
Cdd:cd01347 355 LRYDHYD--QDSKDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPslgelygggshGGTAAVGNPNLKP 432
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 577 RTSEQFEVGYKGDFFKKiLSTMVAVYNIDYKNILAPNPTAANPN---QQTVVRGTRSRGAEITIQGNI-KTLSIITGYAF 652
Cdd:cd01347 433 EKSKQYELGLKYDPGDG-LTLSAALFRIDIKNEIVSTPTNTGLGlvtVYVNGGKARIRGVELEASYDLtDGLGLTGSYTY 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 653 NDHVLTSTSSiGKEGFRYVNAPKHIANVMLKYNLTNgvlQGLGFGVGGRHVSEQ--VGNLATQTFIIPASTVLDAMANYE 730
Cdd:cd01347 512 TDTEVKRTDG-ATTGNRLPGIPKHTANLGLDYELPD---EGLTAGGGVRYRGKQyaDTANGNNTVKVPGYTLVDLSASYQ 587
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1786407605 731 AGR-YNVQFNVYNFTNANYY--NGGLSRVTVASLGNPINFRVGVSY 773
Cdd:cd01347 588 FTKnLTLRLGVNNLFDKDYYtsLSVRGSGLYGYYGPGRTYYLSVSY 633
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
125-773 |
2.09e-68 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 238.08 E-value: 2.09e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 125 EVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG-----FALRGFtgyNPNDASFTT-FNGIRGTLYLWSQQPL 198
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGSGGTtqfgnITIRGF---GLEVDIDNVyLDGVPLLSRGNLAIVD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 199 LYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRLLYRLIVGYDRTN 278
Cdd:TIGR01783 78 PAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGADGTFRGRLNGARQDGD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 279 SFRDYQKVKNFFLAPSLSYNFAPGTSLNLEVNYAYQRAVQQY-----DRGRYVKSNaDGTFDFDYYPKNVTVqspsdfgK 353
Cdd:TIGR01783 158 SFYDGAGEETRLGATATDWQLDDRTLLRLGAYYQKERDRGGYgglpaSGGTSGRDL-SSDRYLGTSSNRNYD-------D 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 354 TKNSSATLTFTHQAGSGLTFSFVQRYVRSKFNFADHFVSGAIRNDS-ISRSYSYWDYDQFNAQTTAFANYKISTGKVRHS 432
Cdd:TIGR01783 230 REYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSDGGlFGRSLTVVNVKQDRVQIDAGLDGEFETGPIEHD 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 433 LLGGVDYNRFGwyKNDYRSSPTTRISILHPDYSNDVPPVNPKVDYYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYDH 512
Cdd:TIGR01783 310 LLLGVSYGQRT--TNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKALNGVALQRILLADKWTLTLGGRYDS 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 513 YRLKQTPlseRDDLQGDESAAKAWVPRIGLVYVPVSNLSFYGSYNRSFAPQLSNNGGA---GGPFPPRTSEQFEVGYKGD 589
Cdd:TIGR01783 388 VDVKSNN---GVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYPKGAgnsGDILEPEKGKNYELGVRYD 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 590 FFKKILSTMvAVYNIDYKNilapNPTAANPNQQTVVRG--TRSRGAEITIQGNIKT-LSIITGYAFNDHVLTSTSSIGKE 666
Cdd:TIGR01783 465 LGDSLLATA-ALFRITKDN----QLVQDPVNGTFSVNAgkTRNRGVELEARGYLTPgLSLSAGYTYTDAEFTEDTNGDTQ 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 667 GFRYVNAPKHIANVMLKYNLTNGVLQgLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAGRY---NVQFNVYNF 743
Cdd:TIGR01783 540 GNTVPFVPKHTASLWASYAPPVGDNG-LTLGGGVQYTGKAYVD-GGNTGKVPSYTVVDLSVRYDLTKKknlTLALNVNNL 617
|
650 660 670
....*....|....*....|....*....|..
gi 1786407605 744 TNANYYNGGLSRVTVASL--GNPINFRVGVSY 773
Cdd:TIGR01783 618 FDRDYYTSGYRWGPSAYIypGAPRTVGLSVSY 649
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
92-773 |
2.58e-56 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 205.16 E-value: 2.58e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 92 DQRQLEEITITGTGSQyktsisslatrtDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGgFALR--- 168
Cdd:COG4772 19 AATTLETVVVTGSRAA------------EARLKDVPGSVSVVDREELENQAATSLREVLRRVPGVNVQEEDG-FGLRpni 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 169 GFTGYNPNDASFTTF--NGI--------RGTLYLwsqQPLLYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRF 238
Cdd:COG4772 86 GIRGLGPRRSRGITLleDGIpiapapygDPAAYY---FPDLERMERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAFGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 239 EFTAAYGSWNAARFSVDATGplnKSKRLLYRLIVGYDRTNSFRDY--QKVKNFFLapSLSYNFAPGTSLNLEVNYAYQRA 316
Cdd:COG4772 163 ELRVTGGSFGYRRTHASVGG---TVGNFGYLVEYSRKRGDGFRDNsgFDINDFNA--KLGYRLSDRQELTLKFQYYDEDA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 317 -------VQQYDRGRYvksnadgtfdfdyypknvtvQS--PSDFGKTKNSSATLTFTHQAGSGLTFSFVQRYVRSKFNFA 387
Cdd:COG4772 238 ntpggltDAQFDADPR--------------------QSyrPADQFDTRRTQLSLRYEHQLSDNTTLTTTAYYNDFSRNWY 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 388 DHFVSGAIRNDSISRSYSYWDYDQFNAQTTAfaNYKISTGKVRHSLLGGVDY-----NRFGwYKNDYRSSPTTRIsilhp 462
Cdd:COG4772 298 IRQNTADPNTPGLGLRGNPRGYRSYGIEPRL--THRFELGGVPHTLEVGLRYhreeeDRKQ-YVNTYGQGRSGAG----- 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 463 dysndvppvnpkvdYYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYDHYRLKQTPLSERDDLQGD--ESAAKAWVPRI 540
Cdd:COG4772 370 --------------LRRDRRFSADALAAYAQNRFELTGRLTLTPGLRYEHIRRDRTDRYSTRTGGDDsgSNSYSEFLPGL 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 541 GLVYVPVSNLSFYGSYNRSFAP----QLSNNGGAGGPFPPRTSEQFEVGYKGDFFKKiLSTMVAVYNIDYKNILAPNPTA 616
Cdd:COG4772 436 GLLYQLTDNLQLYANVSRGFEPptfgDLAYGNGGNPDLKPEKSWNYELGTRGRIGNG-LSAEVALFYIDYDNELGSCSAA 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 617 ANPNQQTVVRG-TRSRGAEITI-----QGNIKTLSIITGYAFNDHVLTSTSSIGKEGFRYVNAPKHIANVMLKYNltngv 690
Cdd:COG4772 515 GGDRSTFTNAGeTRHQGLELALdydllKGGGLGLPLFAAYTYTDAEFTSDFGPVFAGNRLPYVPRHQLTAGLGYE----- 589
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 691 LQGLGFGVGGRHVSEQ---VGNLAT--QTFIIPASTVLDAMANYEAG-RYNVQFNVYNFTNANYYNgglSRVTVASLG-- 762
Cdd:COG4772 590 HGGWTANLNGRYVSEQftdAANTVAdgSFGKIPSYTVLDLSASYDFGkNLSLFAGVNNLFDKRYIA---SRAPNYAAGir 666
|
730
....*....|...
gi 1786407605 763 --NPINFRVGVSY 773
Cdd:COG4772 667 pgPPRTVYAGLRL 679
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
75-733 |
3.14e-56 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 203.55 E-value: 3.14e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 75 VVVFAGKTVNHNLQLSGDQRQLEEITITgtgsqyktsisslATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMT 154
Cdd:COG4771 6 LLLLLALAAQAADALAEDATELEEVVVT-------------ATRTEQSLSDAPASVSVITAEEIEKLGATDLADALRLLP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 155 GVKANNSMG-----GFALRGFTGYNPNdasfTTFNGIR----GTLYLWSQQPL-LYNIENVEILRGPASALL-SESMpGG 223
Cdd:COG4771 73 GVSVTRSGGrggssGISIRGLGGDRVL----VLIDGVPvnnpALGGGGDLSYIpPDDIERIEVIRGPASALYgSDAI-GG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 224 IINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGpLNKSKRLLYRLIVGYDRTNSFRDYQ--------KVKNFFLAPSL 295
Cdd:COG4771 148 VINIITKKPTDELEGSVSLGYGSNGNGTYSGSLSL-GGPGDKLSFLLSGSYRDRDGYLDYRnggfvgnsGYERYNLNAKL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 296 SYNFAPGTSLNLEVNYAYQRAVQQYDRGRYVKSNADGTFDFDYYpknvtvqspsdfgkTKNSSATLTFTHQAGSGLTFSF 375
Cdd:COG4771 227 GYRLSDNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTT--------------TDRGNYSLRYNGDLGDNLDLSL 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 376 -VQRYVRSKFNFADHFVSGAIRNDsisrsysywDYDQFNAQTTAfaNYKISTgkvRHSLLGGVDYNRfgwykNDYRSSpt 454
Cdd:COG4771 293 yYSRTDRDSTNGSLGGSTGSFSDS---------DDTTYGLELDL--TYPLGG---NHTLTLGAEYRY-----DDLDSS-- 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 455 trisilhpdysndvppvnpkvDYYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYDHYRlkqtplserddlQGDESAAK 534
Cdd:COG4771 352 ---------------------SFLGGADASRDTYGLFAQDEWKLTDKLTLTAGLRYDYYS------------TFGASNYT 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 535 AWVPRIGLVYVPVSNLSFYGSYNRSF-APQLSNNGGAGGPFPPR-----------TSEQFEVGYKGDFFKKILSTMVAVY 602
Cdd:COG4771 399 AFSPRLGLRYDLSDNLTLRASYGRGFrAPSLAELYGSGTGTPGRyvlgnpdlkpeTSDNYELGLEYRLGNGGLSLSLTGF 478
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 603 NIDYKNILAPNPTAANPNQQTVVR---GTRSRGAEITIQGNI-KTLSIITGYAFNDhvltSTSSIGKEGFRYVNAPKHIA 678
Cdd:COG4771 479 YTDIKDLIVLVPVGPGPGDVLQYEnvgKARTYGLELELKYRLgKGLTLTASYTYLD----SKIDDGDTGEPLPNVPPHKA 554
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1786407605 679 NVMLKYNLTNGVLQGLGFGVGGRHVSEQVGNlaTQTFIIPASTVLDAMANYEAGR 733
Cdd:COG4771 555 NLGLDYRLPKWWLLLLLTRYYGGRYVTPPSG--RLEGYTPGYTLLDLRASYKLTK 607
|
|
| PRK14050 |
PRK14050 |
TonB-dependent siderophore receptor; |
91-751 |
2.89e-54 |
|
TonB-dependent siderophore receptor;
Pssm-ID: 237595 [Multi-domain] Cd Length: 728 Bit Score: 200.03 E-value: 2.89e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 91 GDQRQLEEITITGTGSQYKTSI----------SSLATRTDAPLLEVPQSVQVISHQIIKDRQAFTLND----ITPLMTG- 155
Cdd:PRK14050 34 GNTTQLETIVVEGGNAASATATgpvdgyvakaTATGSKTDTPITEIPQSVSVVGRQEMDDRGVTNKVDealrYTPGVLSq 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 156 -VKANNSMGGFALRGFtgynpnDASFTT--FNGirgtLYLWSQ-----QPLLYNIENVEILRGPASALLSESMPGGIINF 227
Cdd:PRK14050 114 pFGTDGDTDWFYIRGF------DATQTGvfLDG----LNLFSYgfggfQIDPFMLERVEVLKGPASVLYGGSNPGGIVNM 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 228 VTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRLLYRL---IVGYDrtnSFRDYQKVKNFFLAPSLSYNFAPGTS 304
Cdd:PRK14050 184 VSKRPLDEPLYYTEIGINSYGNAFTGFDVGDKLSDDGTVRYRVtgkVAGGD---NYSDYSEDLRGFIMPQITYAPDDATS 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 305 LNLevnYAYQRAVQQYDRGR----YVKSNADGTF---DFDYYpknvTVQSPSDFGKTKNSSATLTFTHQAGSGLTFSFVQ 377
Cdd:PRK14050 261 LTV---YGYLSGLDQVHVGNgflpYVGTVVDAPFgkiDRDAF----YGEPDIDNGSYAQQMLGYEFSHEFDNGWTFSQNA 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 378 RY----VRSKFNFADHFVSGAIRNDSISRSYSYWDYDQFNAQTT--AF-----ANYKISTGKVRHSLLGGVDYNrfgWYK 446
Cdd:PRK14050 334 RYghlhKHEKGPYTYGYVGGATGLPDPTGPDYMLNRIGFEHRSKvdSFsidnrLEGEFDTGALTHNLLFGLDYK---YYR 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 447 NDY--RSSPTTRISILHPDYSNDVPPVNPkvdyYDDNEQATNLIGGYLQDQISFGEKFKALLSLRYDHYRLKQTPLSErD 524
Cdd:PRK14050 411 LDQvqACCGATPISATNPVYGTTQGANFV----YLDQILTQQQIGIYAQDQIRFGDGWLVTLNGRYDYVDTDSDARIG-T 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 525 DLQGDESAAKAwvpRIGLVYVPVSNLSFYGSYNRSFAPQLsNNGGAGGPFPPRTSEQFEVG--YKGDFFKKILSTmvAVY 602
Cdd:PRK14050 486 SYESNDGALSG---RAGLAYEFDNGLTPYVSAATFFNPLV-GTLASGPPLKPEEGEQYEAGikYEPSFIDGLITA--SVF 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 603 NIDYKNILAPNPTAANPNQQTVVrgtRSRGAEITIQGNIKT-LSIITGYAFNDHVLTSTSSIGKEGFRYVNAPKHIANVM 681
Cdd:PRK14050 560 QITKKNVTVTDPLTFASTQLGEV---RSRGFELEGKVNLDDnWKALASFTYTDLEITEDANPSLIGNSPYLVPETQASLW 636
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 682 LKYNLTNGVLQGLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAGRYNVQFNVYNFTNANYYNG 751
Cdd:PRK14050 637 LDYAVTDGAFEGVSLGAGVRYQGESWAD-EANTLKVPAATLFDAAIRYEKNDWGASLNVANLFDKEYVAG 705
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
96-732 |
7.59e-52 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 192.81 E-value: 7.59e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 96 LEEITITG------TGSQYKTSISSLATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKAN-----NSMGG 164
Cdd:PRK14049 43 LETLVVNGgsggviTADGYVATSSATGAKVDTPFLETPQSISSVTEQQLKDRNPQTLLETLAYTPGARVGafgfdPRFDA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 165 FALRGFtgynpnDASFTTF--NGIR---GTLYLWSQQPllYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFE 239
Cdd:PRK14049 123 FFVRGF------DVTYTGVfrDNLRqpgASSSIFKTEP--YGLEGVSILRGPSSALYGASGAGGLFNLITKRPTEEPLRE 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 240 FTAAYGSWNAARFSVDATGPLNKSKRLLYRLivgydrTNSFRDYQKVK------NFFLAPSLSYNFAPGTSLNLevnyay 313
Cdd:PRK14049 195 VQVQYGTNNRYQGQFDFSGPVNETDPVYYRL------TGLLRDADTEQvgvpddRAYIAPAFTWKPDEDTRLTV------ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 314 qravqqydRGRYVKSNADGTFDFDYYP-----KNVTVQSPsDFGKTKNSSATLTFTHQAGSGLTFSFVQRYVRSKFN--- 385
Cdd:PRK14049 263 --------LGEYSRTKTGGTAAYYNDPltgevTDIFAGNP-AFNDSVQKQGRIGYEFEHRLNDTFVFRQNARVSTLNida 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 386 -FADHFVSGAIRNDSISRSYSYWDYDQFNAQTTAFANYKISTGKVRHSLLGGVDYNRFGWYKNDYRSSpTTRISILHPDY 464
Cdd:PRK14049 334 dWAFAYAPNAADPTLLDSSAGTYDERLTAFVIDNQLEAKFDTGAFEHTLLAGVDYTKLRFRALNGRGV-SPPLDTKNPTQ 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 465 SNDVPPvnpkVDYYDDNEQATNLIGGYLQDQISFgEKFKALLSLRYD-------HYRLKQTPLSERDdlQGDesaaKAWV 537
Cdd:PRK14049 413 GRPVAA----IDFSTRTVQDQWQLGTYLQDQIRY-DAWTLTAGGRYDwvstdtdTTDLATDSLTTVS--QKD----KEFS 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 538 PRIGLVYVPVSNLSFYGSYNRSFAPQLSNNGGAGGPFPPRTSEQFEVGYKGDFFKKILSTMVAVYNIDYKNILAPNPT-- 615
Cdd:PRK14049 482 GRIGLTYETDFGLAPYISYSTAFSPNAGFNRATNQPFKPTESEQQEVGVKYLLPNSNTLITAALFNIDQTNGLYYEVVfl 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 616 AANPNQQTVVRGT-RSRGAEITIQGNIKT-LSIITGYAFNDHVLTSTSSiGKEGFRYVNAPKHIANVMLKYNLT-NGVLQ 692
Cdd:PRK14049 562 AAGPTNIQVQRGKlRSRGFELEANTSLDNgLSLIASYTYTDVKIIQGPE-GTIGNEVSSVPNHMASAWAHYTLPeGGPLY 640
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 1786407605 693 GLGFGVGGRHVSEQVGNlATQTFIIPASTVLDAMANYEAG 732
Cdd:PRK14049 641 GLGLGAGARFVGSSYGN-DQNTFKNSSRVLFDASVGYDFA 679
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
113-748 |
6.11e-47 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 178.41 E-value: 6.11e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 113 SSLATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDI---TP-LMTGVK-ANNSMGGFALRGFTGYNPNDASFttFNGIR 187
Cdd:PRK10044 66 SATGTKTDTPIEKTPQSISVVTAEEMALHQPKSVKEAlsyTPgVSVGTRgASNTYDHLIIRGFAASGQSQNNY--LDGLK 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 188 --GTLYLWSQ-QPllYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSK 264
Cdd:PRK10044 144 lqGNFYNDAViDP--YMLERAELMRGPVSVLYGKSNPGGLLNMVSKRPTTEPLKEVQFKMGTDNLFQTGFDFSDALDDDG 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 265 RLLYRLiVGYDR-TNSFRDYQKVKNFFLAPSLSYNFAPGTSLNLEVNYayqravqqydrgryvkSNADGTFDFDYYPKNV 343
Cdd:PRK10044 222 VYSYRL-TGLARsANAQQKGSEEQRYAIAPSFTWRPDDKTNFTFLSYF----------------QNEPETGYYGWLPKEG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 344 TVQS-------PSDF--GKTKNSSAT------LTFTHQAGSglTFSFVQ--RYVRSKFNFADHFVSG--AIRNDSISRSY 404
Cdd:PRK10044 285 TVEPlpngkrlPTDFneGAKNNTYSRnekmvgYSFDHEFND--TFTVRQnlRYAENKTSQRSVYGYGvcSDKGHYLNRGY 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 405 --SYWDYDQFNAQTTAFAnyKISTGKVRHSLLGGVDYNRFgwyKNDYRS-----SPTTRISILHPDYSN-DVPPVNPKVD 476
Cdd:PRK10044 363 vvDDEKLQNFSVDTQLQS--KFATGDVDHTLLTGVDFMRM---RNDINAwfgyaDSVPLLNLYGPVNTDfDFNANSGPYQ 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 477 YYDDNEQAtnliGGYLQDQIsfgEKFKALLSL--RYDHY------RLKQTpLSERDDlqgdesaaKAWVPRIGLVYVPVS 548
Cdd:PRK10044 438 ILNKQKQT----GLYVQDQA---EWDKWLVTLggRYDWAdqsslnRVNGT-TDKRDD--------KQFTWRGGVNYLFDN 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 549 NLSFYGSYNRSFAPQlSNNGGAGGPFPPRTSEQFEVGYKgdFFKK---ILSTMvAVYNIDYKNILAPNPTaanpNQQTVV 625
Cdd:PRK10044 502 GITPYFSYSESFEPS-SGTGKDGNIFAPSKGKQYEAGVK--YVPKdrpIVVTG-AVYQLTKTNNLTADPE----NSFFSV 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 626 RG--TRSRGAEITIQGNIK-TLSIITGYAFNDHVLTSTSSIgkEGFRYVNAPKHIANVMLKYNLTNGVLQGLGFGVGGRH 702
Cdd:PRK10044 574 QGgeIRARGVELEAKAALSaNVNVTGSYTYTDAEYTTDTTY--KGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRY 651
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1786407605 703 VSEQVGNLAtQTFIIPASTVLDAMANYEAGRY-----NVQFNVYNFTNANY 748
Cdd:PRK10044 652 TGSSYGDPA-NSFKVGSYTVVDALVKYDLARFgmagsSVALNVNNLFDREY 701
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
310-773 |
2.88e-38 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 149.15 E-value: 2.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 310 NYAYQRAVQQYDRGRYVKSNADGTFDFDYYPKNVTVQSPSDFGKTKNSSATLTFTHQAGSGLTFSfvqRYVRSKFNFADH 389
Cdd:pfam00593 14 LLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWL---STLRLGLRYSSL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 390 FVSGAIRNDSISRSYSYWDYDQFNAQTTAFANYKISTGKVRHSLLGGVDYNRFGWYKNdyrsspttrisiLHPDYSNDVP 469
Cdd:pfam00593 91 DGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRTAGLDYRR------------LDDDAYDPYD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 470 PVNPKVDYYDDNEQATnlIGGYLQDQISFGEKFKALLSLRYDHYRLKQTPLSERDDlqGDESAAKAWVPRIGLVYVPVSN 549
Cdd:pfam00593 159 PANPSSSSYSDTTTDS--YGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGD--NFSRSYSAFSPRLGLVYKPTDN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 550 LSFYGSYNRSF-APQLSNNGGAGGP------------FPPRTSEQFEVGYKgdFFKKILSTMVAVYNIDYKNILAPNPTA 616
Cdd:pfam00593 235 LSLYASYSRGFrAPSLGELYGSGSGggggavaggnpdLKPETSDNYELGLK--YDDGRLSLSLALFYIDIKNLITSDPDG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 617 ANPNQQTVVRG----TRSRGAEITIQGNI-KTLSIITGYAFNDHvlTSTSSIGKEGFRYVNAPKHIANVMLKYNLTNGvl 691
Cdd:pfam00593 313 PGLGGTVYTYTnvgkARIRGVELELSGRLwGLGLSGGGYTYTDA--DDDADADDTGNPLPNVPRHTANLGLTYDFPLG-- 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 692 qGLGFGVGGRHV--SEQVGNLATQTFIIPASTVLDAMANYEAG-RYNVQFNVYNFTNANY--YNGGLSRVTVASLGNPIN 766
Cdd:pfam00593 389 -GWGARLGARYVgsGERRYGDAANTFKTPGYTLVDLSAGYRLNkNLTLRLGVNNLFDKYYkrYYSSGGGNLGGYPGPGRT 467
|
....*..
gi 1786407605 767 FRVGVSY 773
Cdd:pfam00593 468 FYLGLSY 474
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
52-748 |
3.02e-38 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 152.65 E-value: 3.02e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 52 KNIPAGKyalLVSSTGYIALkqdVVVFAGKTVNHNLQLSGdQRQLEEITITGTGSQYKTSISSLATRTDaPLLEVPQSVQ 131
Cdd:PRK09840 5 RNFPARQ---FHSLAFFAGL---CIGITPVAQALAAEGQT-NADDTLVVEASTPSLYAPDQSADPKFSQ-PLADTTQTIT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 132 VISHQIIKDRQAFTLNDITPLMTGVKA------NNSMGGFA--LRGFtgynpnDASFTTF-NGIRGtlyLWSQQPLLYNI 202
Cdd:PRK09840 77 VISEQVIKDQGATNLTEALRNVPGVGTffagenGNTTTGDAiyMRGF------DTSNSIYvDGIRD---IGSISRDTFNT 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 203 ENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKRllYRL-IVGYDRTNSFR 281
Cdd:PRK09840 148 EQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTA--VRLnVMGEKTHDAGR 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 282 DYQKVKNFFLAPSLSynFAPGTSLNLEVNYAYQRAVQQYDRG--------------RYVKSNADGTFDfdyyPKNVtVQS 347
Cdd:PRK09840 226 DKVKNERYGVAPSVA--FGLGTANRLYLNYLHVTQNNTPDGGiptiglpgysapsaGRAALNHAGKVD----THNF-YGT 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 348 PSDFGKTKNSSATLTFTHQAGSGLTFSFVQRYVRSKFNFADHFVSGAIRND-----------SISRSYSYwdYDQFNAQT 416
Cdd:PRK09840 299 DSDYDDSTTDTATMRFEHDINDNTTLRNTTRWSRVKQDYLLTAIMGGASNIttptpsdvntwTWSRTANT--KDVSNKIL 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 417 TAFANYKIS--TGKVRHSLLGGVDYNRFGWYKNDYRSSPTTRISILHPDYSNDVPPVNPKvdyYDDNEQATNLIGGYLQD 494
Cdd:PRK09840 377 TNQTNLTSTfyTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNLYHPDSSIHPGGLTRN---GANANGQTDTFAIYAFD 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 495 QISFGEKFKALLSLRYDHYRLKQTPL-----SERDDLQGDESAAKA----------------WvpRIGLVYVPVSNLSFY 553
Cdd:PRK09840 454 TLQLTRDWELNGGIRLDNYHTEYDSAtacggSGRGAITCPAGVAKGspvttvdtaksgnlvnW--KAGALYKLTENGNVY 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 554 GSY--------NRSFAPQLSNNG-GAGGP-FPPRTSEQFEVGYKGDFFKKILSTMVAVYNIDYKNILAPNPTaanpNQQT 623
Cdd:PRK09840 532 INYavsqqppgGSNFALAQSGSGnSANRTdFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDD----GTYS 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 624 VVRGTRSRGAEITIQGNI-KTLSIITGYAFNDHVLTSTSSIGKEGFRYVN-APKHIANVMLKYNLTNgvlqGLGFGVGGR 701
Cdd:PRK09840 608 QYGKKRVEGYELSVAGNItPAWQVIAGYTQQKATVKNGKDVAQDGSSSLPyTPEHAFTLWSQYQATD----DLSVGGGAR 683
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1786407605 702 HVSE----QVGNLATQTFiIPASTVLDAMANYEAGR-YNVQFNVYNFTNANY 748
Cdd:PRK09840 684 YIGSmhrgSDGAVGTPAF-TEGYWVADAKLGYRVNRnLDLQLNVYNLFDTDY 734
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
96-749 |
2.85e-28 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 120.96 E-value: 2.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 96 LEEITITgtgsqyktsisslATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNsmGGFA------LRG 169
Cdd:TIGR01785 1 LDTVTVT-------------ATRTRQVLSEAPASVSVISGEQIESKQANNLADALNTVPGVDVTG--GGRPpgqsinIRG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 170 FTGYNPNdasfTTFNGIR-GTLYLWSQQPLLY----NIENVEILRGPASALLSESMPGGIINFVTKKP---LQENR---F 238
Cdd:TIGR01785 66 LQDNRVL----VVVDGARqNYQRGGAHNGSLFvdpeLLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAadlLRPGQlfgG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 239 EFTAAYGSWN---------AARFSVDATGPLNKSKRLL--YRLIVGYDRTNSfrDYqkVKNFFLApslSYNFAPGTSLNL 307
Cdd:TIGR01785 142 LAKLSYGSNNnsfggsvavAGRLDDNLDALVAATYRDGgnYRNGNKEEATNS--AY--VQKNLLA---KLGWQLDDAQRL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 308 EVNYAYQRAvqQYDRGryvkSNADGTFDFDYYPKNVTVQSpsdfgKTKNSSATLT--FTHQAGSGLTFSFVQRYVRSKFN 385
Cdd:TIGR01785 215 EFSYFTTEG--SLDEA----QNSGPGTEYVLGSSSTLLAS-----STRDRSATLTynWTPEDNPWLDATASLYYNRTEND 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 386 fadhfVSGAIRNDSISRSYSYWDYdQFNAQ-TTAFANYKISTgkvrhsLLGGVDynrfgWYKNdyrsspTTRISILHPDY 464
Cdd:TIGR01785 284 -----NDRSARGVGREEGYQYTTY-GATLQnTSRFDVASWST------LTYGVD-----WMKD------KRRTESFDPNS 340
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 465 SNDVPPVNPKVDyyddneqaTNLIGGYLQDQISF-GEKFKALLSLRYDHYRLKQTPLSERDDLQGDESaakAWVPRIGLV 543
Cdd:TIGR01785 341 VTTIVPNPPSAK--------EYFFGLFLQDNIPLlDDRLTLSAGLRYDHYKLSPKTTADTEAVDRSYS---RWSPSLGLS 409
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 544 YVPVSNLSFYGSYNRSF-AP----QLSNNGGAGGPFP----------PRTSEQFEVGYKGDFFKKI-----LSTMVAVYN 603
Cdd:TIGR01785 410 YKPVDWLTLYASYSQGFrAPsideLYGTGDHPGTPGGytfapnpnlkPETSKTWELGANLSFDNLLldndqLQFKVAYFY 489
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 604 IDYKNILAPNPT-------AANPNQQTV-VRGTRSRGAEitIQGNIKtlsiiTGYAFNDHVLTSTSSIGKEGFRYV-NAP 674
Cdd:TIGR01785 490 NDVKDFIDLTIGvtdnvtaGMNNITQYVnIDGARIRGIE--ASASYD-----AGLWATGLSYGYTIGKDQNTNQWLsNIP 562
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 675 KHIANVMLKYNLTNgvlQGLGFGVGGRHVSEQVGNLATQ------TFIIPASTVLDAMANYEAGRYN---VQFNVYNFTN 745
Cdd:TIGR01785 563 PLKLVVTVGYRFPD---RRLDLGAKAAYYERQSESPTTEdvaangLLTTPGYTVVDLYATYQPNAVKgltVRFGVNNLTD 639
|
....
gi 1786407605 746 ANYY 749
Cdd:TIGR01785 640 RKYT 643
|
|
| PRK10003 |
PRK10003 |
ferric-rhodotorulic acid outer membrane transporter; Provisional |
108-773 |
8.76e-26 |
|
ferric-rhodotorulic acid outer membrane transporter; Provisional
Pssm-ID: 236640 [Multi-domain] Cd Length: 729 Bit Score: 113.42 E-value: 8.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 108 YKTSISSLATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGV---KANNSMGGFALRGFTGYNPNDASFTTFN 184
Cdd:PRK10003 60 YSVKTTSAGTKMQMTQRDIPQSVSIVSQQRMEDQQLQTLGEVMENTLGIsksQADSDRALYYSRGFQIDNYMVDGIPTYF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 185 GIRGTLYLWSQQPLLYniENVEILRGPASALLSESMPGGIINFVTKKPL-QENRFEFTAAYGSWNAARFSVDATGPLNKS 263
Cdd:PRK10003 140 ESRWNLGDALSDTALF--ERVEVVRGATGLMTGTGNPSAAINMVRKHATsREFKGDVSAEYGSWNKQRYVADLQSPLTED 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 264 KRLLYRLIVGYDRTNSFRD-YQKVKNFFlapSLSYNFAPGTSLNLEVNYAYQRA-VQQYDRGRYVKSNADGtfdfdyypk 341
Cdd:PRK10003 218 GKVRARIVAGYQNNDSWLDrYNSEKTFF---SGIVDADLGDLTTLSAGYEYQRIdVNSPTWGGLPRWNTDG--------- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 342 nvtvqSPSDFGKTKNSSATLTFTHQAGSGLTFSFVQRYVR----------------SKFNFADHFV---SGAIRN--DSI 400
Cdd:PRK10003 286 -----SSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADtwqatlnathsevefdSKMMYVDAYVdkaTGMLVGpySNY 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 401 SRSYSYWDYDQFNAQT------TAFANYKISTGKVRHSLLGGVDYNR-FGWYKNDYRSSPTTRISILHpDYSNDVPPVN- 472
Cdd:PRK10003 361 GPGFDYVGGTGWNSGKrkvdalDLFADGSYELFGRQHNLMFGGSYSKqNNRYFSSWANIFPDEIGSFY-NFNGNFPQTDw 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 473 -PKVDYYDDNEQATNLiggYLQDQISFGEKFKALLSLRYDHYRLKQTPLS-ERDDLqgdesaakawVPRIGLVYVPVSNL 550
Cdd:PRK10003 440 sPQSLAQDDTTHMKSL---YAATRVSLADPLHLILGARYTNWRVDTLTYSmEKNHT----------TPYAGLVYDINDNW 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 551 SFYGSYNRSFAPQlsNNGGAGGPF-PPRTSEQFEVGYKGDFFKKILSTMVAVYNIDYKNIlAPNPTAANP--NQQTV--- 624
Cdd:PRK10003 507 STYASYTSIFQPQ--NDRDSSGKYlAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNV-AQSTGTPIPgsNGETAyka 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 625 VRGTRSRGAEITIQG----NIKTLSIITGYAFNDHVLTSTSSigkegfryvNAPKHIANVMLKYNLTngVLQGLGFGVGG 700
Cdd:PRK10003 584 VDGTVSKGVEFELNGaitdNWQLTFGATRYIAEDNEGNAVNP---------NLPRTTVKLFTRYRLP--VMPELTVGGGV 652
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1786407605 701 RHVSEQVGNLATQTFIIPAS----TVLDAMANYEAGR-YNVQFNVYNFTNANYY-NGGLSRVtvasLGNPINFRVGVSY 773
Cdd:PRK10003 653 NWQNRVYTDTVTPYGTFRAEqgsyALVDLFTRYQVTKnFSVQGNVNNLFDKTYDtNVEGSIV----YGAPRNFSITATY 727
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
111-749 |
9.41e-25 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 110.19 E-value: 9.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 111 SISSLATRTDAP----LLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNS----MGGFALRGFTGYNPNdasfTT 182
Cdd:TIGR01786 2 TITVTATRTADPqrrdLSVTPASVSVISREQLKSQQVRNLRDLLRYEPGVSVVEGgrggSQGINIRGLDKNRVA----VL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 183 FNGIR-GTLYlwSQQPLLY---------NIENVEILRGPASALLSESMPGGIINFVTKKP---LQENR---FEFTAAYGS 246
Cdd:TIGR01786 78 VDGIRqNTSY--GGQGSTFyainsidpeLIKSIEIVKGASSSLYGSGALGGVVAFRTKDAadlLKPGKdlgGLSKLGYSS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 247 WNAARF-SVDATGPLNKSKRLL---YR----------LIVGYDRTNSFRDYQ--KVKNFFLapSLSYNFAPGTSLNLEVN 310
Cdd:TIGR01786 156 ANNRFTqSVAAAGRNDDVDALVqatYRrghelkngnkANIGNESKRSKPNPSdyKSQSFLA--KLGWQLNDAHRLGLSLE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 311 YAYQRAvqqydrgryvksNADGTFDFDYYPKNVTVQSPSDFGKTKNSSatltfTHQAGSGLTFSF--VQRYVRSKFNFAD 388
Cdd:TIGR01786 234 YTQTDY------------DEPEMTNTSYLTKPLGAPLLSSTVVLGDSK-----TRDRRTGLDYELnpDNSWLDTVKLALD 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 389 -HFVSGAIRNDSISRS-YSYWDYDQFNAQTTAFANYKIST------GKVRHSLLGGVDYnrfgwYKNDYR-SSPTTRISI 459
Cdd:TIGR01786 297 kQYIQLYNYLNATSASdYPGVDKNGRYKDKYDYYTLGFDTnnkiefSVHSLSLTYGLDR-----FKDKVStGDSRRNLPT 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 460 LHPD---YSNDVPPVnpkvdyyddneqATNLIGGYLQDQISFGEKFKALLSLRYDHYRLKqtPLSERDDLQGD-ESAAKA 535
Cdd:TIGR01786 372 AAYNlygYEGENRPV------------KGSNFGLFLQDNIKLGDWLSLSAGLRYDHYKTD--PKADESKDYGAiSKTYSR 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 536 WVPRIGLVYVPVSNLSFYGSYNRSF-APQL-----SNNGGAGGPFP--------PRTSEQFEVGYKGDFFKkiLSTMVAV 601
Cdd:TIGR01786 438 WSPSLGLTYKPTPWLTLYYSYSQGFrAPSFdelygTGAHPGGGPYTflpnpnlkPETSKNWEIGINLHFDQ--LDFKVSY 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 602 YNIDYKNILA---PNPTAANPNQQ--------TVVRGTRSRGAEitIQGNIKTLSIitgYAFNDHVLTSTS---SIGKEG 667
Cdd:TIGR01786 516 FRNDYKDFIDlgiGVTAKGNMAQVgsntitnyVNIDNARIRGIE--LSGRYDLGSF---FSGPDGWTTTLKygyTKGKDS 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 668 F--RYVNA-PKHIANVMLKYNLTNgvlQGLGFGVGGRHVSEQ-----------VGNLATQT-FIIPASTVLDAMANYEAG 732
Cdd:TIGR01786 591 DtnPWLNAiTPLKVVLGLGYDHPD---EKWGVGLTLTFSGAKdavdayatyyeNGEAAKAGpLRTPSYTVVDLYGYYKPN 667
|
730
....*....|....*...
gi 1786407605 733 RY-NVQFNVYNFTNANYY 749
Cdd:TIGR01786 668 KNlTLRFGVYNLLDRKYT 685
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
116-338 |
5.68e-20 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 90.70 E-value: 5.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 116 ATRTDAPLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGV--KANNSMGGFA---LRGFTGYNPNdasfTTFNGIRGTL 190
Cdd:COG4206 5 ATRLEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVqvSSSGGPGSAAsisIRGLGSNQTL----VLIDGVPLND 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 191 YLWSQQPL----LYNIENVEILRGPASALL-SESMpGGIINFVTKKPLQENRFEFTAAYGSWNAARFSVDATGPLNKSKr 265
Cdd:COG4206 81 PSLGGVDLslipPDDIERIEVLKGAASALYgSDAI-GGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSGGAGKFS- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 266 llYRLIVGYDRTNSFRDYQK-------VKNFFLAPSLSYNFAPGTSLNleVNYAYQRAVQQYDRGRYVKSNADGTFDFDY 338
Cdd:COG4206 159 --YSLSASYRRSDGYRYNDPdlrnndgYENTSLNARLGYKLGDNGSLS--LSGGYSDSERGYPGAVGSDRNLRLSLSLEY 234
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
15-101 |
1.14e-16 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 75.71 E-value: 1.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 15 LTGHIISFE-NAPLSQVNVRIQDSEFATYTNESGYFMLKNIPAGKYALLVSSTGYIALKQDVVVFAGKTVNHNLQLSGDQ 93
Cdd:pfam13715 1 ISGTVVDENtGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDA 80
|
....*...
gi 1786407605 94 RQLEEITI 101
Cdd:pfam13715 81 LLLDEVVV 88
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
122-224 |
2.02e-15 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 72.69 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 122 PLLEVPQSVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG----FALRGFTGYNPNdasfTTFNGIRGTLYLWSQQP 197
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGGGggssISIRGFGSNRVL----VLVDGVPLNSGGGGSVD 76
|
90 100 110
....*....|....*....|....*....|.
gi 1786407605 198 L----LYNIENVEILRGPASALLSESMPGGI 224
Cdd:pfam07715 77 LnsidPEDIERVEVLKGPASALYGSGAIGGV 107
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
75-735 |
1.71e-11 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 67.49 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 75 VVVFAGKTVNHNLQLSGDQRQLEEITITGTGsqYKTSIsslatrTDAPllevpQSVQVISHQIIKDRqafTLNDITPLMT 154
Cdd:PRK13483 12 LCLLPAVFVTHALAQAAPDKTMETVVVTASG--YEQQI------RDAP-----ASISVITREDLENR---FYRDLTDALL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 155 GVKANNSMGG-----FALRGF-TGYN---------------PNDASfttfNGIRGTlylWSqqPLLYNIENVEILRGPAS 213
Cdd:PRK13483 76 DVPGVVVTGGgdrtdISLRGMgSQYTlilvdgkrqssretrPNSDG----PGVEQA---WT--PPLAAIERIEVIRGPMS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 214 ALLSESMPGGIINFVTKK-------------PLQENRfeftaAYGSWNAARFSVdaTGPLnKSKRLLYRLIVGY------ 274
Cdd:PRK13483 147 SLYGSDAIGGVINIITRKvpnewqgevrldtTLQENS-----DSGNVYQANFFV--NGPL-IKDLLGLQLYGQYtqreed 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 275 DRTNSFRDYQkvknfflAPSLSYNFAPGTSLNLEVNYAYQRAVQQYDR--GRYVKSNADGTFDfdyyPKNVTVQSPSDfg 352
Cdd:PRK13483 219 DIEGGYRDKD-------ARSLTAKLALTPNEDHDIMLEVGTSNQERDStvGKTVAPLAPGESC----GRRGCPESSTT-- 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 353 KTKNSSATLTFTHQAGSGLTFSFVQRYVrskfnfadhfvsgairNDSISRSYSYwdyDQFNAQTTAfanykISTGKVRHS 432
Cdd:PRK13483 286 EYERSTVSLSHTGRWDFGTSDTYIQHEE----------------FDNKSREMKI---KNTDFQSSL-----VAPLGQEHT 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 433 LLGGVDYNrfgwyKNDYRSSPTTRISILhpdysNDVppvnpkvdyydDNEQATnligGYLQDQISFGEKFKALLSLRYDH 512
Cdd:PRK13483 342 LTFGAAYN-----HQDLTDETSNQISDL-----TDI-----------SRTQWA----VFSEDEWRIADDFALTGGLRLDH 396
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 513 yrlkqtplserddlqgDESAAKAWVPRIGLVYVPVSNLSFYGSYNRSF-APQLS---------NNGGA--GGP-FPPRTS 579
Cdd:PRK13483 397 ----------------DENFGGHVSPRVYGVWNLAPSWTVKGGVSTGFrAPSLRqttpdwgqvSRGGNiyGNPdLKPETS 460
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 580 EQFEVGYKGDFFKKILSTMVAVYNiDYKNIL------------APNPTAANPNQQTVVRGTRSRGAEITIQGNI-KTLSI 646
Cdd:PRK13483 461 LNKELGLYYDLGSGLTASLTVFYN-EFKDKItrvacpatqctdGPNQFGADPTTYVNIDEAVTQGVEASLSYPItSTLSL 539
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 647 ITGYAFNDhvltSTSSIGK-EGFRYVNAPKHIANVMLKYNLTNGVLQGLGFGVGGRHvSEQVGNLATQTFIIPASTVLDA 725
Cdd:PRK13483 540 SGNYTYTD----SEQKSGAyKGSPLNQLPKHLFQASLNWEPTDRLNSWARVNYRGEE-SQPTTGPSSSSFIAPSYTFLDL 614
|
730
....*....|....*...
gi 1786407605 726 MANYE--------AGRYN 735
Cdd:PRK13483 615 GANYQltdnlklsAGIYN 632
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
15-89 |
8.28e-09 |
|
Carboxypeptidase regulatory-like domain;
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 53.05 E-value: 8.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 15 LTGHIISFENAPLSQVNVRIQD----SEFATYTNESGYFMLKNIPAGKYALLVSSTGY-IALKQDVVVFAGKTVNHNLQL 89
Cdd:pfam13620 2 ISGTVTDPSGAPVPGATVTVTNtdtgTVRTTTTDADGRYRFPGLPPGTYTVTVSAPGFkTATRTGVTVTAGQTTTLDVTL 81
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
202-314 |
4.14e-06 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 50.41 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 202 IENVEILRGPASALLSESMPGGIINFVTKKPLQEnrfeftaAYGSWNA-------------ARFSVDATGPLNKSkrLLY 268
Cdd:PRK13524 146 IERIEVLRGPAAARYGNGAAGGVVNIITKKPTGE-------WHGSWNTyfnapehkaegatKRTNFSLSGPLGDE--LSF 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1786407605 269 RLIVGYDRTNS-----FRDYQK----------------VKNFFLAPSLSYNFAPGTSLNLEVNYAYQ 314
Cdd:PRK13524 217 RLYGNLNKTQAdawdiNQGHQSartgsyagtlpagregVINKDINGLLRWDFAPLQSLELEAGYSRQ 283
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
97-260 |
2.27e-05 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 48.09 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 97 EEITITgTGSQYKTSISSLATrtdapllevpqSVQVISHQIIKDRQAFTLNDITPLMTGVKANNSMGG-----FALRGF- 170
Cdd:PRK13486 25 EDVMIV-SASGYEKKLTNAAA-----------SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKtggleISIRGMp 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 171 --------TGYNPNDASFTTFNGIRG--TLYLwsqqPLLYNIENVEILRGPASALLSESMPGGIINFVTKKPLQENRFEF 240
Cdd:PRK13486 93 asytliliDGVRQGGSSDVTPNGFSAmnTGFM----PPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSV 168
|
170 180
....*....|....*....|....*.
gi 1786407605 241 TAAY-----GSW-NAARFSVDATGPL 260
Cdd:PRK13486 169 NAGLnlqesNKWgNSSQFNFWSSGPL 194
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
197-336 |
2.33e-04 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 44.76 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 197 PLLYNIENVEILRGPASALL-SESMpGGIINFVTKKPLQENRFE------FTAAYGSWNAARFSVDATGPLNK------- 262
Cdd:PRK13513 132 PPLAAIERIEVVRGPMSSLYgSDAM-GGVINIITRKVQKEWHGSlradatLQEDSKSGDIFQTNAYASGPLIDgllglkv 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 263 ----SKRLLYRLIVGYDRtnsfrdyQKVKN----FFLAPSLSYNF-------------APGTSLNLEvnyaYQRAVQQYD 321
Cdd:PRK13513 211 sgllSHRSEDKIIDGYNE-------QRMRNgtatFSLTPDDNNEFdfeigryvqdrnsTPGRTLALN----GTNSDTQYD 279
|
170
....*....|....*
gi 1786407605 322 RGRYVKSNaDGTFDF 336
Cdd:PRK13513 280 RNNYAITH-NGYYDF 293
|
|
| fn3_3 |
pfam14686 |
Polysaccharide lyase family 4, domain II; FnIII-like is domain II of rhamnogalacturonan lyase ... |
39-84 |
9.37e-04 |
|
Polysaccharide lyase family 4, domain II; FnIII-like is domain II of rhamnogalacturonan lyase (RG-lyase). The full-length protein specifically recognizes and cleaves alpha-1,4 glycosidic bonds between l-rhamnose and d-galacturonic acids in the backbone of rhamnogalacturonan-I, a major component of the plant cell wall polysaccharide, pectin. This domain displays an immunoglobulin-like or more specifically Fibronectin-III type fold and shows highest structural similarity to the C-terminal beta-sandwich subdomain of the pro-hormone/propeptide processing enzyme carboxypeptidase gp180 from duck. It serves to assist in producing the deep pocket, with domain III, into which the substrate fits.
Pssm-ID: 464261 Cd Length: 74 Bit Score: 38.34 E-value: 9.37e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1786407605 39 FATYTNESGYFMLKNIPAGKYALLVSSTGYIAL--KQDVVVFAGKTVN 84
Cdd:pfam14686 27 YWTRADSSGSFTIPNVRPGTYRLTAYADGLFGDykQDDVTVSAGSTTT 74
|
|
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
274-756 |
1.21e-03 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 42.32 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 274 YDRTNSFRDYQ-----KVKNFFLAPSLSYNFAPGTSLNLEVNYAYQRAVQ-QYDRGRYVK----SNADGTFDFDYYPKNV 343
Cdd:TIGR01782 303 NEEKETTTSLTlggewTGDRWTLDGDLGYSKATRDRPDRVTRFFTAPTPGyDFDYRGGPTltlgTPADGDDASNYTNPAN 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 344 TVQSPSDFGKTKNSSATLTFTHQA---GSGLTFSFVQRYVRSKFNFadHFVSGAIRNDSISRSYSYWDYDQFNAQTTafa 420
Cdd:TIGR01782 383 GELRRTQISYQKAEDSEDAAQLDAtfdGPFTSLKFGVRYRRRDKTN--RGSRYRRSIIGATGASGLAGVPSDLAGAG--- 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 421 nykistgkvrhsLLGGVDYNRFGWYKNDY----RSSPTTRISILHPDYSNDVPpvnpkvDYYDDNEQATnliGGYLQDQI 496
Cdd:TIGR01782 458 ------------LDGGLGGPLTGWDPADLdaflNAARGDAAGGGTYTYASTAP------NTYTVTEDTT---AAYAMANF 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 497 SFGEKFKALLSLRYDH------YRLKQTPLSERDDLQGDESAAKA---WVPRIGLVYVPVSNLSFYGSYNRSFA----PQ 563
Cdd:TIGR01782 517 DTGLRLRGNVGVRYERtdqtsdGWQSQPAANGTGSVLVPVSADRDytdVLPSLNLAYDLTDDLVLRFAASKTITrpdfGD 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 564 LSNNG-----GAGGPFP---------PRTSEQFEVG---YKGD--------FFKKILSTMVAVYNIDYknilAPNPTAAN 618
Cdd:TIGR01782 597 LAANTslsddGTGGTVTvsggnpdlkPYESDNLDLSlewYFGPggllsaavFYKDIKNFIVTTTSTET----NDGGGGLV 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 619 PNQQTVVR------GTRSRGAEITIQ-------GNIKTLSIITGYAFND-HVLTSTSSIGKEGFRYVNAPKHIANVMLKY 684
Cdd:TIGR01782 673 VAGVLVSRpvnggkAGKIRGVELGYQqtfdflpGPLSGFGVQANYTYVDsEADPSVDGVQRRKLPLPGLSKNTANATLYY 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 685 NLTngvlqGLGFGVGGRHVSEQVGNLATQTF-----IIPASTVLDAMANYeagRYN----VQFNVYNFTNA--NYYNGGL 753
Cdd:TIGR01782 753 EKG-----GFSARLSYNYRSDYLLDVGGSNInrldrYVDPRGQLDLSASY---QVSdhlsLGLQASNLTNEpsRWYTGGK 824
|
...
gi 1786407605 754 SRV 756
Cdd:TIGR01782 825 QRP 827
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
202-279 |
2.69e-03 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 41.28 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 202 IENVEILRGPASALLSESMPGGIINFVTKKPlqENRFEFTAAY----------GSWNAARFSVdaTGPLNKSKrLLYRLI 271
Cdd:PRK13528 144 VERIEVIRGPAAARYGSGAAGGVVNIITKRP--TNDWHGSLSLytnqpesskeGATRRANFSL--SGPLAGDA-LTMRLY 218
|
....*...
gi 1786407605 272 VGYDRTNS 279
Cdd:PRK13528 219 GNLNKTDA 226
|
|
| RGL4_M |
cd10316 |
Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase; The ... |
13-84 |
7.19e-03 |
|
Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase; The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
Pssm-ID: 199904 Cd Length: 92 Bit Score: 36.46 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1786407605 13 GNLTGHI-----ISFENAPLSQVNVRIQDSEFA-------TYTNESGYFMLKNIPAGKYALLVSSTGYI--ALKQDVVVF 78
Cdd:cd10316 3 GTVSGRLllpdgASAAIAVVGLANPGEQGSQFEtkgyqywTEADSDGRFTIPNVRPGTYRLTAYADGIFgyVAQDTVTVT 82
|
....*.
gi 1786407605 79 AGKTVN 84
Cdd:cd10316 83 AGGTTA 88
|
|
| |
