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Conserved domains on  [gi|1800452842|ref|WP_160328311|]
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ATP-binding protein, partial [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IS21_help_AAA super family cl41901
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 1-76 3.88e-41

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


The actual alignment was detected with superfamily member NF038214:

Pssm-ID: 439516  Cd Length: 232  Bit Score: 134.14  E-value: 3.88e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKD 76
Cdd:NF038214  157 IDELGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 1-76 3.88e-41

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 134.14  E-value: 3.88e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKD 76
Cdd:NF038214  157 IDELGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
1-77 9.10e-40

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 131.06  E-value: 9.10e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKDH 77
Cdd:COG1484   166 LDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKEA 242
PRK09183 PRK09183
transposase/IS protein; Provisional
 1-76 3.08e-33

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 114.80  E-value: 3.08e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIF-DDPKIANAILDRILHHSSVVKIKGKSYRLKD 76
Cdd:PRK09183  170 IDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKGESYRLKQ 246
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 1-78 1.68e-32

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 112.15  E-value: 1.68e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKDHS 78
Cdd:pfam01695 159 LDEWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLKTKS 236
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 1-76 3.88e-41

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 134.14  E-value: 3.88e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKD 76
Cdd:NF038214  157 IDELGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
1-77 9.10e-40

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 131.06  E-value: 9.10e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKDH 77
Cdd:COG1484   166 LDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKEA 242
PRK09183 PRK09183
transposase/IS protein; Provisional
 1-76 3.08e-33

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 114.80  E-value: 3.08e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIF-DDPKIANAILDRILHHSSVVKIKGKSYRLKD 76
Cdd:PRK09183  170 IDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKGESYRLKQ 246
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 1-78 1.68e-32

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 112.15  E-value: 1.68e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKDHS 78
Cdd:pfam01695 159 LDEWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLKTKS 236
PRK06526 PRK06526
transposase; Provisional
 1-76 5.17e-28

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 101.10  E-value: 5.17e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYRLKD 76
Cdd:PRK06526  165 VDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRLKD 240
PRK08181 PRK08181
transposase; Validated
 1-73 3.33e-15

transposase; Validated


Pssm-ID: 136670 [Multi-domain]  Cd Length: 269  Bit Score: 67.65  E-value: 3.33e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1800452842   1 IDEIGYLPIGSEDAKLFFQLIDLRYEKKSTIFTTNINFNLWNEIFDDPKIANAILDRILHHSSVVKIKGKSYR 73
Cdd:PRK08181  173 LDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245
PRK08116 PRK08116
hypothetical protein; Validated
 17-83 3.31e-05

hypothetical protein; Validated


Pssm-ID: 236153 [Multi-domain]  Cd Length: 268  Bit Score: 40.00  E-value: 3.31e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1800452842  17 FFQLIDLRY-EKKSTIFTTNINFNlwnEIFDdpKIANAILDRILHHSSVVKIKGKSYRLKDHSPKKEI 83
Cdd:PRK08116  200 VYNIIDSRYrKGLPTIVTTNLSLE---ELKN--QYGKRIYDRILEMCTPVENEGKSYRKEIAKEKLQR 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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