NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1800617832|ref|WP_160441004|]
View 

Ig-like domain-containing protein [Glaesserella parasuis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ig_like_ice super family cl44404
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 265-337 1.87e-09

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


The actual alignment was detected with superfamily member NF012196:

Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 55.57  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 265 ITFDKITGDDFLSFVEQKLEKTTISGTVK-HAKDGDVVKLEIGQSVYYAEVKDSK-----FSKDVNTQSLIV-HEKVTAS 337
Cdd:NF012196   29 ITIDTVTGDNVLNAAESQQPTTTITGTVGgDVKVGDPVTLTVNGHTYTGTVVDLGngqlgYSVDVDTSDLLNnPNDVTAT 108
Ig_like_ice super family cl44404
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 459-538 2.53e-09

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


The actual alignment was detected with superfamily member NF012196:

Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 55.18  E-value: 2.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 459 TITLRPITGDNMINAEEAAKETTVIAGSVTG-ASDGDLVEVSCgcpycaasNWNTIQTKVVNGS-----FKVEFATAVLT 532
Cdd:NF012196   28 TITIDTVTGDNVLNAAESQQPTTTITGTVGGdVKVGDPVTLTV--------NGHTYTGTVVDLGngqlgYSVDVDTSDLL 99


                  ....*.
gi 1800617832 533 ADNHKV 538
Cdd:NF012196  100 NNPNDV 105
Trypan_PARP super family cl42451
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 54-128 1.78e-07

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


The actual alignment was detected with superfamily member pfam05887:

Pssm-ID: 368653  Cd Length: 134  Bit Score: 50.56  E-value: 1.78e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800617832  54 EPETQPTEPETQPT-EPETQPtEPETQPtEPETQPvEPEAIIDKDPNAawvvmpkekaavEPEIEDEPEAKPNTKP 128
Cdd:pfam05887  51 DDDTNGTDPEPEPEpEPEPEP-EPEPEP-EPEPEP-EPEPEPEPEPEP------------EPEPEPEPEPEPEPEP 111
Ig_like_ice super family cl44404
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 364-413 2.58e-07

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


The actual alignment was detected with superfamily member NF012196:

Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 49.41  E-value: 2.58e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1800617832 364 TIKMNPVTTDNILNIAESQQEITS-SGSVT-RADDGSVVELTIGDQTIKAQV 413
Cdd:NF012196   28 TITIDTVTGDNVLNAAESQQPTTTiTGTVGgDVKVGDPVTLTVNGHTYTGTV 79
 
Name Accession Description Interval E-value
Ig_like_ice NF012196
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 265-337 1.87e-09

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 55.57  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 265 ITFDKITGDDFLSFVEQKLEKTTISGTVK-HAKDGDVVKLEIGQSVYYAEVKDSK-----FSKDVNTQSLIV-HEKVTAS 337
Cdd:NF012196   29 ITIDTVTGDNVLNAAESQQPTTTITGTVGgDVKVGDPVTLTVNGHTYTGTVVDLGngqlgYSVDVDTSDLLNnPNDVTAT 108
Ig_like_ice NF012196
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 459-538 2.53e-09

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 55.18  E-value: 2.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 459 TITLRPITGDNMINAEEAAKETTVIAGSVTG-ASDGDLVEVSCgcpycaasNWNTIQTKVVNGS-----FKVEFATAVLT 532
Cdd:NF012196   28 TITIDTVTGDNVLNAAESQQPTTTITGTVGGdVKVGDPVTLTV--------NGHTYTGTVVDLGngqlgYSVDVDTSDLL 99


                  ....*.
gi 1800617832 533 ADNHKV 538
Cdd:NF012196  100 NNPNDV 105
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 54-128 1.78e-07

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 50.56  E-value: 1.78e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800617832  54 EPETQPTEPETQPT-EPETQPtEPETQPtEPETQPvEPEAIIDKDPNAawvvmpkekaavEPEIEDEPEAKPNTKP 128
Cdd:pfam05887  51 DDDTNGTDPEPEPEpEPEPEP-EPEPEP-EPEPEP-EPEPEPEPEPEP------------EPEPEPEPEPEPEPEP 111
Ig_like_ice NF012196
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 364-413 2.58e-07

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 49.41  E-value: 2.58e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1800617832 364 TIKMNPVTTDNILNIAESQQEITS-SGSVT-RADDGSVVELTIGDQTIKAQV 413
Cdd:NF012196   28 TITIDTVTGDNVLNAAESQQPTTTiTGTVGgDVKVGDPVTLTVNGHTYTGTV 79
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 39-137 1.97e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 44.76  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  39 TEPETQPTEPETQSTEPETQPTEPETQPTEPETQPtEPETQPTEPETQPVEPEAIIDKDPNAAWVVMPKEKAAVEPEIED 118
Cdd:NF033839  289 NKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKP-QLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEVKP 367

                          90       100
                  ....*....|....*....|....*..
gi 1800617832 119 EPEA-KPNTKPQ-------LDPLPELP 137
Cdd:NF033839  368 QPEKpKPEVKPQpetpkpeVKPQPEKP 394
Ca_tandemer NF033510
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the ...
 358-413 2.62e-04

Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the biofilm-associated protein Bap of Acinetobacter baumannii (which can exceed 8000 amino acids in length), the calcium-stabilized ice-binding adhesin of the Antarctic bacterium Marinomonas primoryensis, and the giant calcium-binding adhesin SiiE of Salmonella enterica.


Pssm-ID: 411149 [Multi-domain]  Cd Length: 97  Bit Score: 40.74  E-value: 2.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1800617832 358 VEETPLTIKMNPVTTDNILNIAESQQEITSSGSVTrADDGSVVELTIGDQTIKAQV 413
Cdd:NF033510    6 VDTTAPALTINPVAGDDVLNAAEQGQGLTLSGTTT-AEAGQTVTVTLNGKTYTATV 60
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 54-142 2.80e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 43.99  E-value: 2.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  54 EPETQPTEPETQPT--EPETQPtEPETQPTEPETQPVEPEAIIDKDPNAawvvmPKekaavePEIEDEPEA-KPNTKPQL 130
Cdd:NF033839  346 QLETPKPEVKPQPEkpKPEVKP-QPEKPKPEVKPQPETPKPEVKPQPEK-----PK------PEVKPQPEKpKPEVKPQP 413

                          90
                  ....*....|...
gi 1800617832 131 D-PLPELPVLTEP 142
Cdd:NF033839  414 EkPKPEVKPQPEK 426
PRK11633 PRK11633
cell division protein DedD; Provisional
 55-134 4.66e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.30  E-value: 4.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  55 PETQPT--EPETQPTEPETQPTEPetqptePETQPVEPeaiidkdpnaawvvmPKEKAAVEPEIEDEPEAKPNTKPQLDP 132
Cdd:PRK11633   83 PSLDPAtvAPPNTPVEPEPAPVEP------PKPKPVEK---------------PKPKPKPQQKVEAPPAPKPEPKPVVEE 141


                  ..
gi 1800617832 133 LP 134
Cdd:PRK11633  142 KA 143
Ca_tandemer NF033510
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the ...
 458-551 9.04e-04

Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the biofilm-associated protein Bap of Acinetobacter baumannii (which can exceed 8000 amino acids in length), the calcium-stabilized ice-binding adhesin of the Antarctic bacterium Marinomonas primoryensis, and the giant calcium-binding adhesin SiiE of Salmonella enterica.


Pssm-ID: 411149 [Multi-domain]  Cd Length: 97  Bit Score: 39.20  E-value: 9.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 458 PTITLRPITGDNMINAEEAAkETTVIAGSVTGAsDGDLVEVSCGcpycaasnwNTIQTKVV--NGSFKVEFATAVLTA-- 533
Cdd:NF033510   11 PALTINPVAGDDVLNAAEQG-QGLTLSGTTTAE-AGQTVTVTLN---------GKTYTATVdaDGSWSVTVPAADLAAla 79

                          90
                  ....*....|....*...
gi 1800617832 534 DNHKVIRAKVigTDKAGN 551
Cdd:NF033510   80 DGTYTVTVTV--TDAAGN 95
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 36-137 7.64e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 39.37  E-value: 7.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  36 TQPTEPETQPTEPETQSTEPETQPTEPETQPT--EPETQPtEPETQPTEPETQPVEPEAIIDKDPNAAWVVMPKEKAAVE 113
Cdd:NF033839  328 PKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEkpKPEVKP-QPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPK 406

                          90       100
                  ....*....|....*....|....
gi 1800617832 114 PEIEDEPEAKpntKPQLDPLPELP 137
Cdd:NF033839  407 PEVKPQPEKP---KPEVKPQPEKP 427
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 48-131 8.47e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 39.37  E-value: 8.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  48 PETQSTEPETQPTE--PETQPTEPETQPtEPETQPTEPETQPVEPEAIIDKDPNAAWVVMPKEKAAVEPEIEDEPEA-KP 124
Cdd:NF033839  406 KPEVKPQPEKPKPEvkPQPEKPKPEVKP-QPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKpKP 484


                  ....*...
gi 1800617832 125 -NTKPQLD 131
Cdd:NF033839  485 dNSKPQAD 492
 
Name Accession Description Interval E-value
Ig_like_ice NF012196
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 265-337 1.87e-09

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 55.57  E-value: 1.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 265 ITFDKITGDDFLSFVEQKLEKTTISGTVK-HAKDGDVVKLEIGQSVYYAEVKDSK-----FSKDVNTQSLIV-HEKVTAS 337
Cdd:NF012196   29 ITIDTVTGDNVLNAAESQQPTTTITGTVGgDVKVGDPVTLTVNGHTYTGTVVDLGngqlgYSVDVDTSDLLNnPNDVTAT 108
Ig_like_ice NF012196
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 459-538 2.53e-09

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 55.18  E-value: 2.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 459 TITLRPITGDNMINAEEAAKETTVIAGSVTG-ASDGDLVEVSCgcpycaasNWNTIQTKVVNGS-----FKVEFATAVLT 532
Cdd:NF012196   28 TITIDTVTGDNVLNAAESQQPTTTITGTVGGdVKVGDPVTLTV--------NGHTYTGTVVDLGngqlgYSVDVDTSDLL 99


                  ....*.
gi 1800617832 533 ADNHKV 538
Cdd:NF012196  100 NNPNDV 105
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 54-128 1.78e-07

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 50.56  E-value: 1.78e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1800617832  54 EPETQPTEPETQPT-EPETQPtEPETQPtEPETQPvEPEAIIDKDPNAawvvmpkekaavEPEIEDEPEAKPNTKP 128
Cdd:pfam05887  51 DDDTNGTDPEPEPEpEPEPEP-EPEPEP-EPEPEP-EPEPEPEPEPEP------------EPEPEPEPEPEPEPEP 111
Ig_like_ice NF012196
Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of ...
 364-413 2.58e-07

Ig-like domain; This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.


Pssm-ID: 467952 [Multi-domain]  Cd Length: 108  Bit Score: 49.41  E-value: 2.58e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1800617832 364 TIKMNPVTTDNILNIAESQQEITS-SGSVT-RADDGSVVELTIGDQTIKAQV 413
Cdd:NF012196   28 TITIDTVTGDNVLNAAESQQPTTTiTGTVGgDVKVGDPVTLTVNGHTYTGTV 79
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 54-112 4.20e-07

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 49.79  E-value: 4.20e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1800617832  54 EPETQP-TEPETQPTEPETQPTEPETQPtEPETQPvEPEAIIDKDPNAAW---VVMPKEKAAV 112
Cdd:pfam05887  68 EPEPEPePEPEPEPEPEPEPEPEPEPEP-EPEPEP-EPEPEPEPEPGAATlksVALPFAIAAV 128
DUF3664 pfam12406
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are ...
 61-135 1.85e-06

Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length.


Pssm-ID: 289191 [Multi-domain]  Cd Length: 99  Bit Score: 46.79  E-value: 1.85e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1800617832  61 EPETQPTEPEtqPTEPEtQPTEPETQPVEPEaiidkdPNAAWVVMPKEKAAVEPEIEDEPEAKPNTKPQLDPLPE 135
Cdd:pfam12406  28 EPSEQPAQQE--PIEPQ-QPTQPSTEPEELQ------PETVTVEVPEPVTSEEPKESDQTEEQKHEEPEASPAPE 93
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 39-137 1.97e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 44.76  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  39 TEPETQPTEPETQSTEPETQPTEPETQPTEPETQPtEPETQPTEPETQPVEPEAIIDKDPNAAWVVMPKEKAAVEPEIED 118
Cdd:NF033839  289 NKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKP-QLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEVKP 367

                          90       100
                  ....*....|....*....|....*..
gi 1800617832 119 EPEA-KPNTKPQ-------LDPLPELP 137
Cdd:NF033839  368 QPEKpKPEVKPQpetpkpeVKPQPEKP 394
Ca_tandemer NF033510
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the ...
 358-413 2.62e-04

Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the biofilm-associated protein Bap of Acinetobacter baumannii (which can exceed 8000 amino acids in length), the calcium-stabilized ice-binding adhesin of the Antarctic bacterium Marinomonas primoryensis, and the giant calcium-binding adhesin SiiE of Salmonella enterica.


Pssm-ID: 411149 [Multi-domain]  Cd Length: 97  Bit Score: 40.74  E-value: 2.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1800617832 358 VEETPLTIKMNPVTTDNILNIAESQQEITSSGSVTrADDGSVVELTIGDQTIKAQV 413
Cdd:NF033510    6 VDTTAPALTINPVAGDDVLNAAEQGQGLTLSGTTT-AEAGQTVTVTLNGKTYTATV 60
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 54-142 2.80e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 43.99  E-value: 2.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  54 EPETQPTEPETQPT--EPETQPtEPETQPTEPETQPVEPEAIIDKDPNAawvvmPKekaavePEIEDEPEA-KPNTKPQL 130
Cdd:NF033839  346 QLETPKPEVKPQPEkpKPEVKP-QPEKPKPEVKPQPETPKPEVKPQPEK-----PK------PEVKPQPEKpKPEVKPQP 413

                          90
                  ....*....|...
gi 1800617832 131 D-PLPELPVLTEP 142
Cdd:NF033839  414 EkPKPEVKPQPEK 426
PRK11633 PRK11633
cell division protein DedD; Provisional
 55-134 4.66e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.30  E-value: 4.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  55 PETQPT--EPETQPTEPETQPTEPetqptePETQPVEPeaiidkdpnaawvvmPKEKAAVEPEIEDEPEAKPNTKPQLDP 132
Cdd:PRK11633   83 PSLDPAtvAPPNTPVEPEPAPVEP------PKPKPVEK---------------PKPKPKPQQKVEAPPAPKPEPKPVVEE 141


                  ..
gi 1800617832 133 LP 134
Cdd:PRK11633  142 KA 143
Ca_tandemer NF033510
Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the ...
 458-551 9.04e-04

Ca2+-stabilized adhesin repeat; This repeat is found in proteins such as the biofilm-associated protein Bap of Acinetobacter baumannii (which can exceed 8000 amino acids in length), the calcium-stabilized ice-binding adhesin of the Antarctic bacterium Marinomonas primoryensis, and the giant calcium-binding adhesin SiiE of Salmonella enterica.


Pssm-ID: 411149 [Multi-domain]  Cd Length: 97  Bit Score: 39.20  E-value: 9.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832 458 PTITLRPITGDNMINAEEAAkETTVIAGSVTGAsDGDLVEVSCGcpycaasnwNTIQTKVV--NGSFKVEFATAVLTA-- 533
Cdd:NF033510   11 PALTINPVAGDDVLNAAEQG-QGLTLSGTTTAE-AGQTVTVTLN---------GKTYTATVdaDGSWSVTVPAADLAAla 79

                          90
                  ....*....|....*...
gi 1800617832 534 DNHKVIRAKVigTDKAGN 551
Cdd:NF033510   80 DGTYTVTVTV--TDAAGN 95
DUF3664 pfam12406
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are ...
 46-132 3.16e-03

Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length.


Pssm-ID: 289191 [Multi-domain]  Cd Length: 99  Bit Score: 37.55  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  46 TepetqstepETQPTEPEtQPTEPETQPTEpetqpTEPETQPVE-PEAIIDKDpnaawvvmPKEKAAVEPEIEDEPEAKP 124
Cdd:pfam12406  34 A---------QQEPIEPQ-QPTQPSTEPEE-----LQPETVTVEvPEPVTSEE--------PKESDQTEEQKHEEPEASP 90


                  ....*...
gi 1800617832 125 NTKPQLDP 132
Cdd:pfam12406  91 APEPVDEP 98
PRK10819 PRK10819
transport protein TonB; Provisional
 55-142 3.48e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 39.67  E-value: 3.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  55 PETQPTEPETQPT-EPETQPtEPETQPtEPETQPVEPEAIIDKDPNAAWVVMPKEKaavePEIEDEPEAKPNTKPQlDPL 133
Cdd:PRK10819   55 PADLEPPQAVQPPpEPVVEP-EPEPEP-IPEPPKEAPVVIPKPEPKPKPKPKPKPK----PVKKVEEQPKREVKPV-EPR 127


                  ....*....
gi 1800617832 134 PELPVLTEP 142
Cdd:PRK10819  128 PASPFENTA 136
PHA03247 PHA03247
large tegument protein UL36; Provisional
 55-135 4.11e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 4.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832   55 PETQPTEPETQPTEPETQPTEPETqPTEPETQPVEPEAiidkdpnaawvvmPKEKAAVEPEIEDEPEAKPNTKPQLDPLP 134
Cdd:PHA03247  2890 AVSRSTESFALPPDQPERPPQPQA-PPPPQPQPQPPPP-------------PQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955


                   .
gi 1800617832  135 E 135
Cdd:PHA03247  2956 S 2956
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 36-137 7.64e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 39.37  E-value: 7.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  36 TQPTEPETQPTEPETQSTEPETQPTEPETQPT--EPETQPtEPETQPTEPETQPVEPEAIIDKDPNAAWVVMPKEKAAVE 113
Cdd:NF033839  328 PKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEkpKPEVKP-QPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPK 406

                          90       100
                  ....*....|....*....|....
gi 1800617832 114 PEIEDEPEAKpntKPQLDPLPELP 137
Cdd:NF033839  407 PEVKPQPEKP---KPEVKPQPEKP 427
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 44-142 8.05e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.68  E-value: 8.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832   44 QPTEPETQSTEPETQPTEPEtQPTEPETQPTEPEtQPTEPETQPVEPEAIIDKDPnaawvvmpkEKAAVEPEIEDEPEAK 123
Cdd:PRK10263   789 PQYQQPQQPVAPQPQYQQPQ-QPVAPQPQYQQPQ-QPVAPQPQYQQPQQPVAPQP---------QDTLLHPLLMRNGDSR 857

                           90
                   ....*....|....*....
gi 1800617832  124 PNTKPQlDPLPELPVLTEP 142
Cdd:PRK10263   858 PLHKPT-TPLPSLDLLTPP 875
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 48-131 8.47e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 39.37  E-value: 8.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1800617832  48 PETQSTEPETQPTE--PETQPTEPETQPtEPETQPTEPETQPVEPEAIIDKDPNAAWVVMPKEKAAVEPEIEDEPEA-KP 124
Cdd:NF033839  406 KPEVKPQPEKPKPEvkPQPEKPKPEVKP-QPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKpKP 484


                  ....*...
gi 1800617832 125 -NTKPQLD 131
Cdd:NF033839  485 dNSKPQAD 492
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH