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Conserved domains on  [gi|1801905633|ref|WP_161425570|]
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MULTISPECIES: OmpA family protein [Vibrio]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 101-201 1.08e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 126.51  E-value: 1.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGE 180
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|.
gi 1801905633 181 HTPACTNQTPQGRACNRRVEL 201
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEI 104
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 101-201 1.08e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 126.51  E-value: 1.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGE 180
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|.
gi 1801905633 181 HTPACTNQTPQGRACNRRVEL 201
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEI 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 95-201 1.63e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 126.82  E-value: 1.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  95 VKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIY 174
Cdd:COG2885   183 VVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRIT 262

                          90       100
                  ....*....|....*....|....*..
gi 1801905633 175 TRGYGEHTPACTNQTPQGRACNRRVEL 201
Cdd:COG2885   263 AVGYGESRPVASNDTEEGRAKNRRVEI 289
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 101-202 6.78e-22

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 85.69  E-value: 6.78e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGE 180
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81

                          90       100
                  ....*....|....*....|..
gi 1801905633 181 HTPACTNQTPQGRACNRRVELL 202
Cdd:TIGR02802  82 EKPAALGHDEAAWAKNRRAVLV 103
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 103-196 2.69e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 76.24  E-value: 2.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 103 FQTGSAVVPSASVQWLAQLGRYLANTPQID-IVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGEH 181
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1801905633 182 TPACTNQTPQGRACN 196
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
90-201 2.47e-16

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 74.14  E-value: 2.47e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  90 GDHTMVKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVS 169
Cdd:PRK10510  103 GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVD 182

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1801905633 170 LAAIYTRGYGEHTPACTNQTPQGRACNRRVEL 201
Cdd:PRK10510  183 ASRIRTQGMGPANPIASNSTAEGKAQNRRVEI 214
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 101-201 1.08e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 126.51  E-value: 1.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGE 180
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|.
gi 1801905633 181 HTPACTNQTPQGRACNRRVEL 201
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEI 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 95-201 1.63e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 126.82  E-value: 1.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  95 VKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIY 174
Cdd:COG2885   183 VVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRIT 262

                          90       100
                  ....*....|....*....|....*..
gi 1801905633 175 TRGYGEHTPACTNQTPQGRACNRRVEL 201
Cdd:COG2885   263 AVGYGESRPVASNDTEEGRAKNRRVEI 289
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 101-202 6.78e-22

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 85.69  E-value: 6.78e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGE 180
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81

                          90       100
                  ....*....|....*....|..
gi 1801905633 181 HTPACTNQTPQGRACNRRVELL 202
Cdd:TIGR02802  82 EKPAALGHDEAAWAKNRRAVLV 103
MotB COG1360
Flagellar motor protein MotB [Cell motility];
73-207 1.68e-20

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 84.13  E-value: 1.68e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  73 SLESFLSANGLDYEL---IPGDHTMVKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQiDIVIEGHTDNT--GTERF 147
Cdd:COG1360    30 ALSSALEENLLSGQVevrITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNVpiSTARF 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1801905633 148 ND--GLSMRRADMVKNILLEQQVSLAAIYTRGYGEHTPACTNQTPQGRACNRRVELLMIMDS 207
Cdd:COG1360   109 PSnwELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRA 170
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 103-196 2.69e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 76.24  E-value: 2.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 103 FQTGSAVVPSASVQWLAQLGRYLANTPQID-IVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGEH 181
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1801905633 182 TPACTNQTPQGRACN 196
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 90-202 5.45e-17

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 73.88  E-value: 5.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  90 GDHTMVKLKRAVQFQTGSAVVpSASVQWLAQ-LGRYLANTPQiDIVIEGHTDNTG--TERF--NDGLSMRRADMVKNILL 164
Cdd:TIGR03350  21 GDRSVVRLRGDELFASGSAEV-RAEFEPLLLrIAKALAAVPG-RITVVGHTDNVPirTARFpsNWHLSEARAKAVADVLA 98

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1801905633 165 EQQVSLAAIYTRGYGEHTPACTNQTPQGRACNRRVELL 202
Cdd:TIGR03350  99 QAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEID 136
PRK10510 PRK10510
OmpA family lipoprotein;
90-201 2.47e-16

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 74.14  E-value: 2.47e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  90 GDHTMVKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVS 169
Cdd:PRK10510  103 GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVD 182

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1801905633 170 LAAIYTRGYGEHTPACTNQTPQGRACNRRVEL 201
Cdd:PRK10510  183 ASRIRTQGMGPANPIASNSTAEGKAQNRRVEI 214
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 101-203 5.72e-16

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 73.69  E-value: 5.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGE 180
Cdd:TIGR03789 141 VQFRTGSSDIEPHFQPQLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGE 220

                          90       100
                  ....*....|....*....|...
gi 1801905633 181 HTPACTNQTPQGRACNRRVELLM 203
Cdd:TIGR03789 221 SAPLKDEQESESDFFDRRVTLTL 243
motB PRK07734
flagellar motor protein MotB; Reviewed
 67-204 8.92e-16

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 73.24  E-value: 8.92e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  67 KTLSdSSLESFLSANGLdyelipgdhtMVKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNT--GT 144
Cdd:PRK07734  121 KQLS-SSLQTKLTEEGL----------LITILDNILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNVpiAN 189

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1801905633 145 ERF--NDGLSMRRADMVKNILLE-QQVSLAAIYTRGYGEHTPACTNQTPQGRACNRRVELLMI 204
Cdd:PRK07734  190 AQFasNWELSVMRAVNFMQVLLEnKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 95-202 1.07e-14

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 70.81  E-value: 1.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  95 VKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQiDIVIEGHTDNT--GTERF--NDGLSMRRADMVKNILLEQQVS- 169
Cdd:PRK09038  129 IEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPN-PIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAp 207

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1801905633 170 --LAAIytrGYGEHTPACTNQTPQGRACNRRVELL 202
Cdd:PRK09038  208 srLAAV---GYGEFQPVADNDTAEGRARNRRVVLV 239
PRK09967 PRK09967
OmpA family protein;
97-203 1.78e-14

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 68.08  E-value: 1.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  97 LKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLE-QQVSLAAIYT 175
Cdd:PRK09967   50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMgGQIPRSNLTT 129

                          90       100
                  ....*....|....*....|....*...
gi 1801905633 176 RGYGEHTPACTNQTPQGRACNRRVELLM 203
Cdd:PRK09967  130 QGLGKKYPIASNKTAQGRAENRRVAVVI 157
motB PRK08457
flagellar motor protein MotB; Reviewed
 41-208 1.52e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 64.35  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  41 YPDWRLAPASLMAAKPESMPATHQP-----MKTLSDSSLESFLSANGLDYELIPGDHTMV-KLKRAVQFQTGSAVVPSAS 114
Cdd:PRK08457   58 YTAKPEVKQPVKVIPPDSGDAEEEMdelksLKASQNTQQETIERRKGEGGALDQIDNGIAlKLPSKLLFENGSAEIINAD 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 115 VQ----WLAQLGRYLAntPQIDIVIEGHTDNT--GTERFNDG--LSMRRADMVKNILLEQQVSLAAIYTRGYGEHTPACT 186
Cdd:PRK08457  138 MMdylkRIAKIITKLP--KQVKINVRGYTDNSplNKSRYKDHyeLAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAP 215

                         170       180
                  ....*....|....*....|..
gi 1801905633 187 NQTPQGRACNRRVELLMIMDSQ 208
Cdd:PRK08457  216 NDSLENRLKNNRVEIFFKVDAN 237
PRK07033 PRK07033
DotU family type VI secretion system protein;
91-201 1.02e-11

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 63.15  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  91 DHTMVKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQiDIVIEGHTDNT--GTERF--NDGLSMRRADMVKNILLEQ 166
Cdd:PRK07033  306 DRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKG-NVLVTGYSDNVpiRTARFpsNWELSQARAQAVRALLAAR 384

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1801905633 167 QVSLAAIYTRGYGEHTPACTNQTPQGRACNRRVEL 201
Cdd:PRK07033  385 LGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEI 419
PRK09039 PRK09039
peptidoglycan -binding protein;
101-201 1.11e-10

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 59.59  E-value: 1.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 101 VQFQTGSAVVPSASVQWLAQLGRYLANT-----PQIDIVI--EGHTDN---TGTERFNDG--LSMRRADMVKNILLEQQV 168
Cdd:PRK09039  226 VLFPTGSAELNPEGQAEIAKLAAALIELakeipPEINWVLrvDGHTDNvplSGTGRFRDNweLSSARAISVVKFLIALGV 305

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1801905633 169 S---LAAiytRGYGEHTPACTNQTPQGRACNRRVEL 201
Cdd:PRK09039  306 PadrLAA---AGFGEFQPLDPGDTPEARARNRRIEL 338
motB PRK08944
flagellar motor protein MotB; Reviewed
 112-200 1.45e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 56.17  E-value: 1.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 112 SASVQW-----LAQLGRYLANTPQIdIVIEGHTDNTG--TERF--NDGLSMRRADMVKNILLE-QQVSLAAIYTRGYGEH 181
Cdd:PRK08944  187 SAFLQPkfkpvVRKIGELLKDVPGI-ITVSGHTDNVPisSELYrsNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADT 265

                          90
                  ....*....|....*....
gi 1801905633 182 TPACTNQTPQGRACNRRVE 200
Cdd:PRK08944  266 QPLVPNDTAENRARNRRVE 284
PRK08126 PRK08126
hypothetical protein; Provisional
 92-202 1.85e-09

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 56.24  E-value: 1.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  92 HTMVKLKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIeGHTDNT--GTERF--NDGLSMRRADMVKNILLEQQ 167
Cdd:PRK08126  316 HSSVVFRGDAMFVPGQATVNPAMGPLIAKIAREIARVGGKVTVT-GHTDNQpiRSAQFasNLVLSEKRAAQVAQMLQSAG 394

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1801905633 168 VSLAAIYTRGYGEHTPACTNQTPQGRACNRRVELL 202
Cdd:PRK08126  395 VPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEIT 429
PRK06925 PRK06925
flagellar motor protein MotB;
97-203 6.38e-09

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 54.00  E-value: 6.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  97 LKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQiDIVIEGHTDN--TGTERF--NDGLSMRRADMVKNILLEQQ-VSLA 171
Cdd:PRK06925  116 LQEAVLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSrpISTYRYpsNWELSAARASSVIRYFTSKEkLDSS 194

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1801905633 172 AIYTRGYGEHTPACTNQTPQGRACNRRVELLM 203
Cdd:PRK06925  195 RFIAVGYADTKPVVPNTTEENMQENRRVEIVI 226
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
110-202 9.44e-09

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 52.56  E-value: 9.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 110 VPSASVQWLAQLGRYLANTPQIDIVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIYTRGYGEHTPACTNQT 189
Cdd:PRK10802   80 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 159

                          90
                  ....*....|...
gi 1801905633 190 PQGRACNRRVELL 202
Cdd:PRK10802  160 EAAYAKNRRAVLV 172
motB PRK06667
flagellar motor protein MotB; Validated
 95-206 1.98e-08

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 52.87  E-value: 1.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  95 VKLKRAVQFQTGSAVVPSA----SVQWLAQLGRYLANTPQiDIVIEGHTDNTGTE-----RFNDGLSMRRA-DMVKNIL- 163
Cdd:PRK06667  121 ISLASDAFFYPGSAEVKLEenreTLQKIASFIGFLDLAGR-NFRIEGHTDNVDVNpegpwKSNWELSGARAvNMLEYILn 199

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1801905633 164 ----LEQQVSLAaiytrGYGEHTPACTNQTPQGRACNRRVELLMIMD 206
Cdd:PRK06667  200 ygdqSESWFQVS-----GFAGSRPLATEDTPEGRAYNRRIDIVILTD 241
PRK09040 PRK09040
hypothetical protein; Provisional
 119-201 2.27e-07

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 49.24  E-value: 2.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 119 AQLGRYLANTPQIdIVIEGHTDN----TGTERFND--GLSMRRADMVKNILLEQQVSLAAIYTRGYGEHTPACTNQTPQG 192
Cdd:PRK09040  112 GPLAAYLRARDEI-LMVSGFTDDqpvrAGNRRFADnwELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEG 190


                  ....*....
gi 1801905633 193 RACNRRVEL 201
Cdd:PRK09040  191 RAKNRRVEI 199
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 103-199 5.26e-07

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 48.52  E-value: 5.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 103 FQTGSAVVPSASVQWLAQLGRYLANTPQiDIVIEGHTDN--TGTERFNDGL---SMRRADMVKNILLEQQVSLAAIYTRG 177
Cdd:PRK06742  119 FDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSrpIHNDKFPSNWelsSARAANMIHHLIEVYNVDDKRLAAVG 197

                          90       100
                  ....*....|....*....|..
gi 1801905633 178 YGEHTPACTNQTPQGRACNRRV 199
Cdd:PRK06742  198 YADTKPVVPNDSPQNWEKNRRV 219
PRK10808 PRK10808
outer membrane protein A; Reviewed
 97-201 1.06e-06

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 48.15  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633  97 LKRAVQFQTGSAVVPSASVQWLAQLGRYLANTPQID--IVIEGHTDNTGTERFNDGLSMRRADMVKNILLEQQVSLAAIY 174
Cdd:PRK10808  222 LKSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDgsVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKIS 301

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1801905633 175 TRGYGEHTP----ACTNQTPQGR-----ACNRRVEL 201
Cdd:PRK10808  302 ARGMGKSNPvtgnTCDNVKPRAAlidclAPDRRVEI 337
PRK07034 PRK07034
hypothetical protein; Provisional
 103-202 1.04e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 45.55  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 103 FQTGSAVVPSASV--QWLAQLGRYLANTPQiDIVIEGHTDN----TGTERFNDGLSMRRADMVKNILLE-------QQVS 169
Cdd:PRK07034  398 FRTGEATLSEEFInkKNIERLGLALAPWPG-DIEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKLREstqinetHQRE 476

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1801905633 170 LAAIytrGYGEHTPACTNQTPQGRACNRRVELL 202
Cdd:PRK07034  477 ISAI---GRGESDPLADNATEEGRKRNRRVDIL 506
motB PRK05996
MotB family protein;
103-203 9.17e-05

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 42.38  E-value: 9.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1801905633 103 FQTGSAVVPSASVQWLAQLGRYLANTPQIdIVIEGHTDN---TGTERFNDGLSMRRADM-----VKNILLEQQVSLAAiy 174
Cdd:PRK05996  318 FAIGSAVPRAELVLAMEKIGQLLAERPGA-VIIRGHTDArpfKSATYDNWRLSTARAQSayymlVRGGLDEKRIEQVE-- 394

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1801905633 175 trGYGEHTPactnQTPQG--RACNRRVELLM 203
Cdd:PRK05996  395 --GFADRRP----KLPNDpnAAANRRIEILI 419
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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