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Conserved domains on  [gi|1805218495|ref|WP_162096496|]
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YojF family protein [Staphylococcus simiae]

Protein Classification

YojF family protein( domain architecture ID 10556021)

YojF family protein is a DUF1806 domain-containing protein; similar to Bacillus subtilis protein YojF

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1806 pfam08830
Protein of unknown function (DUF1806); This is a bacterial family of uncharacterized proteins. ...
 4-118 1.60e-61

Protein of unknown function (DUF1806); This is a bacterial family of uncharacterized proteins. The structure of one of the proteins in this family has been solved and it adopts a beta barrel-like structure.


:

Pssm-ID: 430245  Cd Length: 112  Bit Score: 183.58  E-value: 1.60e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805218495   4 PIQEQEVLNLLTSYENKPVYLHVETTNGAYANHFDQRVFNAGTFLRNIQVTFEHAQLKGGNkdPYRIGLKLtNGGWVYVQ 83
Cdd:pfam08830   1 PIDKEEVQALLDSFANKPVYLHLETTNGAYASHFDESFFSAGAFIRNAKITYERGKITGNG--PYRVGLKL-EIGWVYAE 77

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1805218495  84 GLTHYEVNHNNEFLIAGFNYEGQLAATLEISERPF 118
Cdd:pfam08830  78 GLTHYEVDEEGRLLLAGHDYEGKLAVALEISETPF 112
 
Name Accession Description Interval E-value
DUF1806 pfam08830
Protein of unknown function (DUF1806); This is a bacterial family of uncharacterized proteins. ...
 4-118 1.60e-61

Protein of unknown function (DUF1806); This is a bacterial family of uncharacterized proteins. The structure of one of the proteins in this family has been solved and it adopts a beta barrel-like structure.


Pssm-ID: 430245  Cd Length: 112  Bit Score: 183.58  E-value: 1.60e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805218495   4 PIQEQEVLNLLTSYENKPVYLHVETTNGAYANHFDQRVFNAGTFLRNIQVTFEHAQLKGGNkdPYRIGLKLtNGGWVYVQ 83
Cdd:pfam08830   1 PIDKEEVQALLDSFANKPVYLHLETTNGAYASHFDESFFSAGAFIRNAKITYERGKITGNG--PYRVGLKL-EIGWVYAE 77

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1805218495  84 GLTHYEVNHNNEFLIAGFNYEGQLAATLEISERPF 118
Cdd:pfam08830  78 GLTHYEVDEEGRLLLAGHDYEGKLAVALEISETPF 112
 
Name Accession Description Interval E-value
DUF1806 pfam08830
Protein of unknown function (DUF1806); This is a bacterial family of uncharacterized proteins. ...
 4-118 1.60e-61

Protein of unknown function (DUF1806); This is a bacterial family of uncharacterized proteins. The structure of one of the proteins in this family has been solved and it adopts a beta barrel-like structure.


Pssm-ID: 430245  Cd Length: 112  Bit Score: 183.58  E-value: 1.60e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805218495   4 PIQEQEVLNLLTSYENKPVYLHVETTNGAYANHFDQRVFNAGTFLRNIQVTFEHAQLKGGNkdPYRIGLKLtNGGWVYVQ 83
Cdd:pfam08830   1 PIDKEEVQALLDSFANKPVYLHLETTNGAYASHFDESFFSAGAFIRNAKITYERGKITGNG--PYRVGLKL-EIGWVYAE 77

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1805218495  84 GLTHYEVNHNNEFLIAGFNYEGQLAATLEISERPF 118
Cdd:pfam08830  78 GLTHYEVDEEGRLLLAGHDYEGKLAVALEISETPF 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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