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Conserved domains on  [gi|1805515632|ref|WP_162131646|]
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MULTISPECIES: ABC transporter permease subunit [Pseudomonas]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
1-293 5.07e-134

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK10683:

Pssm-ID: 444901  Cd Length: 317  Bit Score: 382.14  E-value: 5.07e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632   1 MPSGRKLVIGVPFLWLCLFFLLPFFLVMKISFSEAALAIPPYSEIYTYAEQKFQLFLNVGNYLLLTDDELYISAYLGSLK 80
Cdd:PRK10683   25 MKHGRKLVIALPYLWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQ 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  81 VALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWTGLTDHPIEILNTN 160
Cdd:PRK10683  105 VAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTN 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 161 TAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIPELLGG 240
Cdd:PRK10683  185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1805515632 241 PETLMIGRVLWQEFFNNRDWPVASALAVVMLLILIVPILLFNRSQAKEMEARG 293
Cdd:PRK10683  265 PDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG 317
 
Name Accession Description Interval E-value
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
1-293 5.07e-134

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 382.14  E-value: 5.07e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632   1 MPSGRKLVIGVPFLWLCLFFLLPFFLVMKISFSEAALAIPPYSEIYTYAEQKFQLFLNVGNYLLLTDDELYISAYLGSLK 80
Cdd:PRK10683   25 MKHGRKLVIALPYLWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQ 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  81 VALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWTGLTDHPIEILNTN 160
Cdd:PRK10683  105 VAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTN 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 161 TAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIPELLGG 240
Cdd:PRK10683  185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1805515632 241 PETLMIGRVLWQEFFNNRDWPVASALAVVMLLILIVPILLFNRSQAKEMEARG 293
Cdd:PRK10683  265 PDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG 317
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
57-293 1.92e-96

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 285.50  E-value: 1.92e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  57 LNVGNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:COG1176    51 FTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGR 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 137 NGLLNGFLMWTGLTDHPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNG 216
Cdd:COG1176   131 NGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPG 210
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1805515632 217 IIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVVMLLILIVPILLFNRSQAKEMEARG 293
Cdd:COG1176   211 IIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
78-232 5.80e-22

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 91.15  E-value: 5.80e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  78 SLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWTGltdhpIEIL 157
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFG-----ISLV 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1805515632 158 NTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEF 232
Cdd:TIGR02141  78 FTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEF 152
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
75-270 2.71e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 2.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  75 YLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPT---WTAILIRVYAWMGILSNNGLLNGFLMWTGltd 151
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLslpSLVLGLLLVLLFGVLLGWGILPGLGLPAL--- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 152 hpieilntntavyIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGE 231
Cdd:cd06261    78 -------------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1805515632 232 FVIPELLGGPETLMI--GRVLWQEFFNNRDWPVASALAVVM 270
Cdd:cd06261   145 FALVSFLGGGEAPGPgtGLLLIFAILFPGDLGVAAAVALIL 185
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
159-270 1.01e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 159 TNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIPELL 238
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1805515632 239 GGPETL--MIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:pfam00528 131 GSWPGLglLLIEAILGYDYPEIQGPVLAAALILL 164
 
Name Accession Description Interval E-value
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
1-293 5.07e-134

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 382.14  E-value: 5.07e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632   1 MPSGRKLVIGVPFLWLCLFFLLPFFLVMKISFSEAALAIPPYSEIYTYAEQKFQLFLNVGNYLLLTDDELYISAYLGSLK 80
Cdd:PRK10683   25 MKHGRKLVIALPYLWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQ 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  81 VALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWTGLTDHPIEILNTN 160
Cdd:PRK10683  105 VAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTN 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 161 TAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIPELLGG 240
Cdd:PRK10683  185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1805515632 241 PETLMIGRVLWQEFFNNRDWPVASALAVVMLLILIVPILLFNRSQAKEMEARG 293
Cdd:PRK10683  265 PDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG 317
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
57-293 1.92e-96

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 285.50  E-value: 1.92e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  57 LNVGNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:COG1176    51 FTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGR 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 137 NGLLNGFLMWTGLTDHPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNG 216
Cdd:COG1176   131 NGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPG 210
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1805515632 217 IIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVVMLLILIVPILLFNRSQAKEMEARG 293
Cdd:COG1176   211 IIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
54-268 1.39e-61

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 196.45  E-value: 1.39e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  54 QLFLNVGNYLLLTDDeLYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGI 133
Cdd:PRK09497   45 KMVFTLDNYTRLLDP-LYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIF 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 134 LSNNGLLNGFLMWTGLTDHPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLA 213
Cdd:PRK09497  124 LSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLT 203
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1805515632 214 KNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAV 268
Cdd:PRK09497  204 MPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSI 258
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
64-270 5.98e-26

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 102.88  E-value: 5.98e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  64 LLTDDELyISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIrvyawMGIlsnnGLLNGF 143
Cdd:COG1177    53 LFSDPRL-LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIV-----LGV----ALLLLF 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 144 LMwtgltdhpIEILNTNTAVYIG-VVYAyLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCM 222
Cdd:COG1177   123 SA--------LGLSGGLWGLILAhVVFT-LPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGAL 193
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1805515632 223 LVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDwPVASALAVVM 270
Cdd:COG1177   194 LAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGIS-PEINALSTLL 240
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
55-270 2.55e-25

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 105.24  E-value: 2.55e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  55 LFLNVGNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKAN---KETQNVLMLL-IMMPTWTAilirVYAW 130
Cdd:COG1178    36 FTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDfpgRRLLRWLLLLpLALPPYVV----ALAW 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 131 MGILSNNGLLNGFLM-WTGLTDHPIEILntnTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKIT 209
Cdd:COG1178   112 IALFGPNGLLNTLLRaLFGLEPPDIYGL---GGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVT 188
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1805515632 210 VPLAKNGIIAGCMLVFIPVVGEFVIPELLGGPETlMIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:COG1178   189 LPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT-TLTTAIYQAWLGDFDLGAAAALALVL 248
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
78-247 2.02e-24

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 97.81  E-value: 2.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  78 SLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMP-------TWTAILIrvyawmgILSNNGLLNGFLMWTGLt 150
Cdd:COG4149    12 SLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPlvlpptvLGFYLLL-------LFGRNGPLGQLLEELFG- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 151 dhpIEILNTNTAVYIG-VVYAyLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVV 229
Cdd:COG4149    84 ---ISLVFTWTGAVLAsVVVS-LPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARAL 159
                         170
                  ....*....|....*...
gi 1805515632 230 GEFVIpellggpeTLMIG 247
Cdd:COG4149   160 GEFGA--------TLMFA 169
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
78-232 5.80e-22

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 91.15  E-value: 5.80e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  78 SLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWTGltdhpIEIL 157
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFG-----ISLV 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1805515632 158 NTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEF 232
Cdd:TIGR02141  78 FTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEF 152
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
60-270 9.91e-20

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 86.73  E-value: 9.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  60 GNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKeTQNVLMLLIMMPTWTAILIRVYAWMGILS-NNG 138
Cdd:COG1175    63 DNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLR-GRGFFRTLFFLPWVISPVVVALIWKWLFNpDYG 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 139 LLNGFLMWTGLTDHPIeILNTNTAVY---IGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKN 215
Cdd:COG1175   142 LLNALLGALGLEPINW-LGDPSLALPaviIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRP 220
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1805515632 216 GIIAGCMLVFIPVVGEFVIPELL--GGP--ETLMIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:COG1175   221 TILFVLVLSTIGALQVFDLVYVLtgGGPgnSTTTLVLYIYQTAFQQFDFGYASAIAVVL 279
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
61-270 3.39e-19

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 87.14  E-value: 3.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  61 NYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPtwtailirvYAWMGILSNNGLL 140
Cdd:COG1178   326 NYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLP---------YAVPGIVLGLGLL 396
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 141 NGFLmwtgltdHPIEILNTNTAVYIGVVYA--YLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGII 218
Cdd:COG1178   397 LLFN-------RPLPLLLYGTLAILVLAYVvrFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLL 469
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1805515632 219 AGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQeFFNNRDWPVASALAVVM 270
Cdd:COG1178   470 AAALLVFVTSMKELSATLLLRPPGFETLAVLIYQ-LASSGRYGEAAALALLL 520
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
64-232 4.75e-17

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 79.02  E-value: 4.75e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  64 LLTDDELyISAYLGSLKVALFSTLMCLVLGFPMAYAITKAN---KETQNVLMLL-IMMPTWTAILIRVYawmgILSNNGL 139
Cdd:COG0555    46 VLTSPRV-LAALKLSLGTALIAALINLVFGLPLAWVLVRYRfpgKRLVDALVDLpFALPTAVAGIALLL----LFGPNGW 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 140 LNGFLMWTGltdhpIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIA 219
Cdd:COG0555   121 LGQLLAPLG-----IKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLT 195
                         170
                  ....*....|...
gi 1805515632 220 GCMLVFIPVVGEF 232
Cdd:COG0555   196 GFALAFARALGEF 208
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
63-232 2.85e-15

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 73.20  E-value: 2.85e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  63 LLLTDDELyISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNG 142
Cdd:TIGR01581  12 SALTDPEN-IKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGP 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 143 FLMWTGltdhpIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCM 222
Cdd:TIGR01581  91 YLEAAG-----IQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLV 165
                         170
                  ....*....|
gi 1805515632 223 LVFIPVVGEF 232
Cdd:TIGR01581 166 LAWARALGEF 175
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
56-240 1.17e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 73.95  E-value: 1.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  56 FLNVGNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILS 135
Cdd:TIGR03262  37 FIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 136 NNGLLNGFLMWTGLTDhPIEILntntavyIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKN 215
Cdd:TIGR03262 117 NQGLLKGLLGGFSIYG-FWGIV-------IGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKY 188
                         170       180
                  ....*....|....*....|....*
gi 1805515632 216 GIIAGCMLVFIPVVGEFVIPELLGG 240
Cdd:TIGR03262 189 GLISAAFVVFTLVITDFGVPKVIGG 213
cysT CHL00187
sulfate transport protein; Provisional
30-232 1.92e-13

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 68.12  E-value: 1.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  30 ISFSEAALAIPPYSEIYTYAEQKFQLFLNvgnyllLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQN 109
Cdd:CHL00187   18 LSYIIFLLVLPILALLIKASQQPWSDFLQ------KATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 110 VLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWTGltdhpIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQS 189
Cdd:CHL00187   92 LLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLG-----IQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKE 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1805515632 190 LLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEF 232
Cdd:CHL00187  167 LEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
75-270 2.71e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 2.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  75 YLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPT---WTAILIRVYAWMGILSNNGLLNGFLMWTGltd 151
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLslpSLVLGLLLVLLFGVLLGWGILPGLGLPAL--- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 152 hpieilntntavyIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGE 231
Cdd:cd06261    78 -------------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1805515632 232 FVIPELLGGPETLMI--GRVLWQEFFNNRDWPVASALAVVM 270
Cdd:cd06261   145 FALVSFLGGGEAPGPgtGLLLIFAILFPGDLGVAAAVALIL 185
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
67-270 1.58e-12

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 66.57  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  67 DDELYISAYLGSLKVALFSTLMCLVLG-----------FPMAYAITKanketqnVLMLLIMMPTWtaiLIRVyAWMGILS 135
Cdd:PRK15050   67 GSPDFRGALLTTLQIAFASTAGCLVLGvllalvlafvpFPGASLVGR-------FIDTFVAFPSF---LITL-AFTFLYG 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 136 NNGLLNGFLM-WTGLTDHPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAK 214
Cdd:PRK15050  136 SAGSVNIALQrLFGLEAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAW 215
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1805515632 215 NGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:PRK15050  216 PALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDYPTACAIAVVN 271
modB PRK09421
molybdate ABC transporter permease subunit;
63-232 1.13e-11

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 63.02  E-value: 1.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  63 LLLTDDElyISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTwtaILIRV---YAWMGILSNNGL 139
Cdd:PRK09421    1 MILSDPE--WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPL---VLPPVvtgYLLLISMGRRGF 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 140 LNGFLM----------WTGltdhpieilntntAVYIGVVYAYlPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKIT 209
Cdd:PRK09421   76 IGQWLYewfgisfafsWRG-------------AALAAAVMAF-PLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTIT 141
                         170       180
                  ....*....|....*....|...
gi 1805515632 210 VPLAKNGIIAGCMLVFIPVVGEF 232
Cdd:PRK09421  142 LPLTLPGIIAGTVLAFARSLGEF 164
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
57-270 1.10e-10

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 60.83  E-value: 1.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  57 LNVGNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMP----TWTAILIRVYAWmg 132
Cdd:TIGR00969  44 KGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPfalsPVVAGLTLALLY-- 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 133 ilSNNGLLNGFLmwtglTDHPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPL 212
Cdd:TIGR00969 122 --GSNGWLGSWL-----ASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPS 194
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 213 AKNGIIAGCMLVFIPVVGEFVIPELLGG--PETLMIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:TIGR00969 195 IRWALLYGVVLTFARALGEFGAVVVVSGniPGKTLTLPLLIEERLEQYDYPGAYVIAAVL 254
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
41-270 3.34e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 53.56  E-value: 3.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  41 PYSEIYTYAEQKFQLFLNVGNYLLLTDDELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLI----M 116
Cdd:COG0395    42 PPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLIlatlM 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 117 MPtWTAILIRVYawmgilsnngllngfLMWTGLtdhpiEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASD 196
Cdd:COG0395   122 IP-GQVLLIPLY---------------LLFRQL-----GLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARI 180
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1805515632 197 LGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIP-ELLGGPE--TLMIGRVLWQEFFNNrDWPVASALAVVM 270
Cdd:COG0395   181 DGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDlrTLPVGLASFQGQYGT-DWGLLMAAAVIA 256
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
68-270 9.35e-08

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 51.94  E-value: 9.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  68 DELYISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMWT 147
Cdd:TIGR02139  45 EPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPL 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 148 GltdhpIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIP 227
Cdd:TIGR02139 125 G-----IKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFAR 199
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1805515632 228 VVGEFVIPELLGG--PETLMIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:TIGR02139 200 AVGEYGSVIFIAGnlPMKTEIAPLLIFQKLEQYDYAGATAIASVM 244
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
64-242 3.91e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 49.98  E-value: 3.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  64 LLTDDELyISAYLGSLKVALFSTLMCLVLGFPMAYAITK---ANKETQNVLMLLIMMPTWTAILIRVYAWMGILsnnGLL 140
Cdd:PRK09500   49 LFNNDSL-LQAAQHSLTMAVFSATFATLIGSLTAVALYRyrfRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL---GIQ 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 141 NGFlmWTGLTDHpieilntntavyigvVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAG 220
Cdd:PRK09500  125 LGF--WSLLFAH---------------ITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
                         170       180
                  ....*....|....*....|..
gi 1805515632 221 CMLVFIPVVGEFVIPELLGGPE 242
Cdd:PRK09500  188 WLLSFTLSLDDVVVSSFVTGPS 209
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
72-232 4.62e-06

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 47.00  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  72 ISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMwtgltD 151
Cdd:TIGR02140  46 LSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLE-----D 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 152 HPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGE 231
Cdd:TIGR02140 121 LDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGE 200

                  .
gi 1805515632 232 F 232
Cdd:TIGR02140 201 F 201
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
72-270 7.10e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 46.67  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  72 ISAYLGSLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGllngflmWTG--L 149
Cdd:PRK10971   57 VAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNG-------WYGewL 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 150 TDHPIEILNTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVV 229
Cdd:PRK10971  130 AKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSL 209
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1805515632 230 GEFvipellgGPETLMIGRVLW-------------QEFfnnrDWPVASALAVVM 270
Cdd:PRK10971  210 GEF-------GAVIFIAGNIAWktevtslmifvrlQEF----DYPAASAIASVI 252
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
159-270 1.01e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632 159 TNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIPELL 238
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1805515632 239 GGPETL--MIGRVLWQEFFNNRDWPVASALAVVM 270
Cdd:pfam00528 131 GSWPGLglLLIEAILGYDYPEIQGPVLAAALILL 164
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
187-241 2.56e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 38.68  E-value: 2.56e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1805515632 187 DQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEFVIPELLGGP 241
Cdd:PRK10592  167 DRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGP 221
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
78-232 3.82e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 38.19  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1805515632  78 SLKVALFSTLMCLVLGFPMAYAITKANKETQNVLMLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLmwtglTDHPIEIL 157
Cdd:PRK11602   69 TVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL-----DEHNLQLM 143
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1805515632 158 NTNTAVYIGVVYAYLPFMVLPLYANLVKHDQSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVVGEF 232
Cdd:PRK11602  144 FSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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