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Conserved domains on  [gi|1806865095|ref|WP_162322170|]
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CMD domain protein [Nesterenkonia haasae]

Protein Classification

carboxymuconolactone decarboxylase family protein( domain architecture ID 10024304)

carboxymuconolactone decarboxylase family protein, similar to Enterobacter hormaechei YciW

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CMD_Avi_7170 TIGR04029
CMD domain protein, Avi_7170 family; Sequences in this family occur as the N-terminal domain ...
15-204 5.04e-54

CMD domain protein, Avi_7170 family; Sequences in this family occur as the N-terminal domain of a fusion protein with a C-terminal peroxidase-like protein, or as discrete protein encoded next to a peroxidase-like protein. The two partners regularly are encoded near to, and in the same genomes as, a putative FMN-dependent luciferase-like monooxygenase (LLM) (TIGR04027), and an ABC transporter in which TIGR04028 models the substrate-binding protein. CDD identifies this family as falling within the CMD superfamily that includes carboxymuconolactone decarboxylase.


:

Pssm-ID: 213885  Cd Length: 174  Bit Score: 170.46  E-value: 5.04e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  15 DIIDSLCQITPGSHLDTIRQSRAQARDNAQRSFEVLLEPHDPGTFPLSERYAVAAYSVGLQASESAAlDFYLELTEEEtD 94
Cdd:TIGR04029   1 DLLDTLAEIAPDSPLAQARATRPAATDNAQRSYEALFEPADAGDFSLAERYAVATFVAGLHQDEALA-AFYADLLQDE-A 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  95 SHFARSIEQLSRAARRAGPYgeyreprhaeeSEPGETVHYDPEDVPgssQRLAAALEHAHLLSLHPRDARPEHLKRLENA 174
Cdd:TIGR04029  79 APLVAAIRAAIRRGASTGPY-----------SVPGFLWRPDAAALG---PRLAAALDHAHLLVFHPRDAAPQALGALTAA 144
                         170       180       190
                  ....*....|....*....|....*....|
gi 1806865095 175 GWSADDIVTLSQLISFLAFQIRVVDGLLAL 204
Cdd:TIGR04029 145 GWSADDIVTLSQLVAFLSFQSRLLRGLRVL 174
 
Name Accession Description Interval E-value
CMD_Avi_7170 TIGR04029
CMD domain protein, Avi_7170 family; Sequences in this family occur as the N-terminal domain ...
15-204 5.04e-54

CMD domain protein, Avi_7170 family; Sequences in this family occur as the N-terminal domain of a fusion protein with a C-terminal peroxidase-like protein, or as discrete protein encoded next to a peroxidase-like protein. The two partners regularly are encoded near to, and in the same genomes as, a putative FMN-dependent luciferase-like monooxygenase (LLM) (TIGR04027), and an ABC transporter in which TIGR04028 models the substrate-binding protein. CDD identifies this family as falling within the CMD superfamily that includes carboxymuconolactone decarboxylase.


Pssm-ID: 213885  Cd Length: 174  Bit Score: 170.46  E-value: 5.04e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  15 DIIDSLCQITPGSHLDTIRQSRAQARDNAQRSFEVLLEPHDPGTFPLSERYAVAAYSVGLQASESAAlDFYLELTEEEtD 94
Cdd:TIGR04029   1 DLLDTLAEIAPDSPLAQARATRPAATDNAQRSYEALFEPADAGDFSLAERYAVATFVAGLHQDEALA-AFYADLLQDE-A 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  95 SHFARSIEQLSRAARRAGPYgeyreprhaeeSEPGETVHYDPEDVPgssQRLAAALEHAHLLSLHPRDARPEHLKRLENA 174
Cdd:TIGR04029  79 APLVAAIRAAIRRGASTGPY-----------SVPGFLWRPDAAALG---PRLAAALDHAHLLVFHPRDAAPQALGALTAA 144
                         170       180       190
                  ....*....|....*....|....*....|
gi 1806865095 175 GWSADDIVTLSQLISFLAFQIRVVDGLLAL 204
Cdd:TIGR04029 145 GWSADDIVTLSQLVAFLSFQSRLLRGLRVL 174
YciW1 COG4950
N-terminal domain of uncharacterized protein YciW (function unknown) [Function unknown];
1-213 3.31e-49

N-terminal domain of uncharacterized protein YciW (function unknown) [Function unknown];


Pssm-ID: 443977  Cd Length: 177  Bit Score: 158.55  E-value: 3.31e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095   1 MTQTTSTqatvgsaDIIDSLCQITPGSHLDTIRQSRAQARDNAQRSFEVLLEPHDPGTFPLSERYAVAAYSVGLQASESA 80
Cdd:COG4950     1 MTTATSP-------DVIDTLAGIAPGSALAALRAQRAKAREATQASYDALFSPALPGGLSLAERLAVALFVARLHGAQAL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  81 AldfylelteeetdSHFARSIEQLSRAARRAGPygeyreprhaeesepgetvhyDPEDVPGSSQRLAAALEHAHLLSLHP 160
Cdd:COG4950    74 A-------------AHYAARLAPLPAPALAAAA---------------------DPDAAAELDPRLAAALAHARLLTLRP 119
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1806865095 161 RDARPEHLKRLENAGWSADDIVTLSQLISFLAFQIRVVDGLLALADNPAPQEA 213
Cdd:COG4950   120 REATPAALQALLDAGLSTPDIVTLSQLIAFVSYQARVVAGLRALAGLPAAAAG 172
 
Name Accession Description Interval E-value
CMD_Avi_7170 TIGR04029
CMD domain protein, Avi_7170 family; Sequences in this family occur as the N-terminal domain ...
15-204 5.04e-54

CMD domain protein, Avi_7170 family; Sequences in this family occur as the N-terminal domain of a fusion protein with a C-terminal peroxidase-like protein, or as discrete protein encoded next to a peroxidase-like protein. The two partners regularly are encoded near to, and in the same genomes as, a putative FMN-dependent luciferase-like monooxygenase (LLM) (TIGR04027), and an ABC transporter in which TIGR04028 models the substrate-binding protein. CDD identifies this family as falling within the CMD superfamily that includes carboxymuconolactone decarboxylase.


Pssm-ID: 213885  Cd Length: 174  Bit Score: 170.46  E-value: 5.04e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  15 DIIDSLCQITPGSHLDTIRQSRAQARDNAQRSFEVLLEPHDPGTFPLSERYAVAAYSVGLQASESAAlDFYLELTEEEtD 94
Cdd:TIGR04029   1 DLLDTLAEIAPDSPLAQARATRPAATDNAQRSYEALFEPADAGDFSLAERYAVATFVAGLHQDEALA-AFYADLLQDE-A 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  95 SHFARSIEQLSRAARRAGPYgeyreprhaeeSEPGETVHYDPEDVPgssQRLAAALEHAHLLSLHPRDARPEHLKRLENA 174
Cdd:TIGR04029  79 APLVAAIRAAIRRGASTGPY-----------SVPGFLWRPDAAALG---PRLAAALDHAHLLVFHPRDAAPQALGALTAA 144
                         170       180       190
                  ....*....|....*....|....*....|
gi 1806865095 175 GWSADDIVTLSQLISFLAFQIRVVDGLLAL 204
Cdd:TIGR04029 145 GWSADDIVTLSQLVAFLSFQSRLLRGLRVL 174
YciW1 COG4950
N-terminal domain of uncharacterized protein YciW (function unknown) [Function unknown];
1-213 3.31e-49

N-terminal domain of uncharacterized protein YciW (function unknown) [Function unknown];


Pssm-ID: 443977  Cd Length: 177  Bit Score: 158.55  E-value: 3.31e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095   1 MTQTTSTqatvgsaDIIDSLCQITPGSHLDTIRQSRAQARDNAQRSFEVLLEPHDPGTFPLSERYAVAAYSVGLQASESA 80
Cdd:COG4950     1 MTTATSP-------DVIDTLAGIAPGSALAALRAQRAKAREATQASYDALFSPALPGGLSLAERLAVALFVARLHGAQAL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865095  81 AldfylelteeetdSHFARSIEQLSRAARRAGPygeyreprhaeesepgetvhyDPEDVPGSSQRLAAALEHAHLLSLHP 160
Cdd:COG4950    74 A-------------AHYAARLAPLPAPALAAAA---------------------DPDAAAELDPRLAAALAHARLLTLRP 119
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1806865095 161 RDARPEHLKRLENAGWSADDIVTLSQLISFLAFQIRVVDGLLALADNPAPQEA 213
Cdd:COG4950   120 REATPAALQALLDAGLSTPDIVTLSQLIAFVSYQARVVAGLRALAGLPAAAAG 172
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
137-209 8.25e-03

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 35.24  E-value: 8.25e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1806865095 137 EDVPGSSQRLAAALEHAHLLSLHPRDARPEHLKRLEnAGWSADDIVTLSQLISFLAFQIRVVDGLLALADNPA 209
Cdd:COG2128    68 RESPLFDPRERAALAFAEALTRTPGGVSDADVAALR-AGFSDAEIVELVLAIALFNMSNRLNNALGTPPDPPF 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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