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Conserved domains on  [gi|1806865099|ref|WP_162322174|]
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ABC transporter permease [Nesterenkonia haasae]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-307 1.61e-92

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 277.33  E-value: 1.61e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGSpqlGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGP---RATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:COG0601    78 GTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASD--------LQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALL 232
Cdd:COG0601   158 KLGWLPVSGRVSpwedfldaLRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALI 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806865099 233 PALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLR 307
Cdd:COG0601   238 PVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-307 1.61e-92

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 277.33  E-value: 1.61e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGSpqlGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGP---RATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:COG0601    78 GTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASD--------LQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALL 232
Cdd:COG0601   158 KLGWLPVSGRVSpwedfldaLRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALI 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806865099 233 PALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLR 307
Cdd:COG0601   238 PVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-309 6.93e-56

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 183.38  E-value: 6.93e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSviARYGSPQLGlSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:PRK15081    1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDP--ARLAAGPEA-DAQVVALVRQQLGLDQPLPHQFWHYISNALQGDF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:PRK15081   78 GTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGL 240
Cdd:PRK15081  158 ELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGL 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806865099 241 LFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLRKK 309
Cdd:PRK15081  238 QFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-309 4.61e-53

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 176.10  E-value: 4.61e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGSPQLGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGL 240
Cdd:TIGR02789 161 YLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806865099 241 LFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLRKK 309
Cdd:TIGR02789 241 HIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRK 309
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 116-308 1.14e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 81.96  E-value: 1.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 116 AFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFsfqlglvpviGASDLQALILPSLAISVPIAAPLAQIL 195
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 196 VSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMP 275
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1806865099 276 VLQAIVVLSAATFVLINLIVDLLYPVLDPRLRK 308
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 108-297 5.79e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 5.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 108 SFLLAVVLAFTIAFTSTFSPFaWLRRVTRALPPLFISIPVFWLAIVLIQVFSFQLGLVPVIGasdlqaLILPSLAISVPI 187
Cdd:cd06261    11 ATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPG------LGLPALILALLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 188 AAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQ 267
Cdd:cd06261    84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                         170       180       190
                  ....*....|....*....|....*....|
gi 1806865099 268 AVANRdmpVLQAIVVLSAATFVLINLIVDL 297
Cdd:cd06261   164 LLIFA---ILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-307 1.61e-92

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 277.33  E-value: 1.61e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGSpqlGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGP---RATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:COG0601    78 GTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASD--------LQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALL 232
Cdd:COG0601   158 KLGWLPVSGRVSpwedfldaLRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALI 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806865099 233 PALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLR 307
Cdd:COG0601   238 PVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-309 6.93e-56

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 183.38  E-value: 6.93e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSviARYGSPQLGlSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:PRK15081    1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDP--ARLAAGPEA-DAQVVALVRQQLGLDQPLPHQFWHYISNALQGDF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:PRK15081   78 GTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGL 240
Cdd:PRK15081  158 ELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGL 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806865099 241 LFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLRKK 309
Cdd:PRK15081  238 QFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-309 4.61e-53

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 176.10  E-value: 4.61e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGSPQLGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGL 240
Cdd:TIGR02789 161 YLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1806865099 241 LFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLRKK 309
Cdd:TIGR02789 241 HIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRK 309
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-307 1.37e-51

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 172.57  E-value: 1.37e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGSPQLGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:PRK10352    1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:PRK10352   81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGL 240
Cdd:PRK10352  161 YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1806865099 241 LFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLR 307
Cdd:PRK10352  241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-309 4.97e-38

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 137.64  E-value: 4.97e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYGspQLGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:PRK10914    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAG--ERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:PRK10914   79 GISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIG-------------------------------ASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVS 209
Cdd:PRK10914  159 HWNLTPVSGrvsdmvflddsnpltgfmlidtaiwgedgnfIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIR 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 210 VVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFV 289
Cdd:PRK10914  239 TARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMII 318

                         330       340
                  ....*....|....*....|
gi 1806865099 290 LINLIVDLLYPVLDPRLRKK 309
Cdd:PRK10914  319 LVNLLVDLLYGVVNPRIRHK 338
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-307 5.15e-38

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 136.73  E-value: 5.15e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSViarygSPQLGLSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDL 80
Cdd:PRK09471    1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPF-----TGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQ-TGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFS 159
Cdd:PRK09471   76 GPSFKyKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 160 FQLGLVPVIGASD--LQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTI 237
Cdd:PRK09471  156 ITLHWLPGGGWNGgaLKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSY 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 238 AGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRLR 307
Cdd:PRK09471  236 MGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-312 3.27e-34

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 126.88  E-value: 3.27e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSViarygspqlglssaevaeirasigADQPVWTQFWLALTGFLTGDL 80
Cdd:COG4168     1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPL------------------------SDASLFSGYLFYLQNLLQGDF 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:COG4168    57 GISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSL 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIG-------------------------------ASDLQALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVS 209
Cdd:COG4168   137 NLGWLPVSGrynllyeippvtgfalidawlsdspyrlkaiQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIK 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 210 VVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFV 289
Cdd:COG4168   217 AAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVI 296

                         330       340
                  ....*....|....*....|...
gi 1806865099 290 LINLIVDLLYPVLDPRLRKKVRA 312
Cdd:COG4168   297 IVNILSDILGALLNPLKRKEWYA 319
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 116-308 1.14e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 81.96  E-value: 1.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 116 AFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFsfqlglvpviGASDLQALILPSLAISVPIAAPLAQIL 195
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 196 VSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMP 275
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1806865099 276 VLQAIVVLSAATFVLINLIVDLLYPVLDPRLRK 308
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-304 1.29e-17

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 81.66  E-value: 1.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGdsviarygSPQLGLSsaevaeirasigadqpVWTQFWLALTGFLTGDL 80
Cdd:PRK15110    1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPH--------APLQGAS----------------LWDAWVFWFNGLLHWDF 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  81 GFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTFSPFAWLRRVTRALPPLFISIPVFWLAIVLIQVFSF 160
Cdd:PRK15110   57 GVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSL 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 161 QLGLVPVIGASDL-------------------------------QALILPSLAISVPIAAPLAQILVSSIDEVRSQPFVS 209
Cdd:PRK15110  137 TLGWLPVSGRFDLlyevkpvtgfalidawlsdspwrdemimsaiRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVK 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 210 VVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQAVANRDMPVLQAIVVLSAATFV 289
Cdd:PRK15110  217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVI 296

                         330
                  ....*....|....*
gi 1806865099 290 LINLIVDLLYPVLDP 304
Cdd:PRK15110  297 IVNVLSDILGAMANP 311
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-306 5.29e-14

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 71.70  E-value: 5.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPG---DSVIA-----------------------RYGSPQL---------G 45
Cdd:PRK15133    1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGgpvDQAIAaiefgqagglpgaggegvrashaQTGVGNIsdsnyrggrG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099  46 LSSAEVAEIRASIGADQPVWTQFWLALTGFLTGDLGFSTQTGASVSSMLAAALPATAALTLTSFLLAVVLAFTIAFTSTF 125
Cdd:PRK15133   81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 126 ---SPF-AWlrrvTRALPPLFISIPVFWLAIVLIQVFS--FQLGLVPVIG--ASDLQAL-------------ILPSLAIS 184
Cdd:PRK15133  161 rngSRFdVW----SSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGlvSANFDSLpwyqkitdylwhiTLPVLATV 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 185 VPIAAPLAQILVSS-IDEVRSQpFVSVVRAKGASNNWLLWRNVLGNALLpaLTIAGL---LFGELIAGAVVTETIFGRSG 260
Cdd:PRK15133  237 IGGFAALTMLTKNSfLDEIRKQ-YVVTARAKGVSEKNILWKHVFRNAML--LVIAGFpatFISMFFTGSLLIEVMFSLNG 313

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1806865099 261 IGRMTEQAVANRDMPVLQAIVVLSAATFVLINLIVDLLYPVLDPRL 306
Cdd:PRK15133  314 LGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-92 1.35e-07

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 49.14  E-value: 1.35e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099   1 MWSYVLRRLGQALLVLFVAFTATFFLLHYLPGDSVIARYG---SPQLglssaeVAEIRASIGADQPVWTQFWLALTGFLT 77
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGkncTPET------LALIRHNLGLDKPIPVQYWHFLSGIFA 74

                          90       100
                  ....*....|....*....|....*..
gi 1806865099  78 GD------------LGFSTQTGASVSS 92
Cdd:pfam19300  75 GRdfgavghcpapcLGYSFANNEPVWD 101
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 108-297 5.79e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 5.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 108 SFLLAVVLAFTIAFTSTFSPFaWLRRVTRALPPLFISIPVFWLAIVLIQVFSFQLGLVPVIGasdlqaLILPSLAISVPI 187
Cdd:cd06261    11 ATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPG------LGLPALILALLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 188 AAPLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGLLFGELIAGAVVTETIFGRSGIGRMTEQ 267
Cdd:cd06261    84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                         170       180       190
                  ....*....|....*....|....*....|
gi 1806865099 268 AVANRdmpVLQAIVVLSAATFVLINLIVDL 297
Cdd:cd06261   164 LLIFA---ILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 110-254 1.58e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1806865099 110 LLAVVLAFTIAFTSTFSPfAWLRRVTRALPPLFISIPVFWLAIVLIQVFSFqlGLVPVIgasdlqalilpsLAISVPIAA 189
Cdd:COG1173    90 LIALVIGVLLGLLAGYFG-GWVDAVLMRLVDVLLAFPSLLLAIALVAVLGP--GLLNVI------------LALGLTGWP 154

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1806865099 190 PLAQILVSSIDEVRSQPFVSVVRAKGASNNWLLWRNVLGNALLPALTIAGLLFgeliAGAVVTET 254
Cdd:COG1173   155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGI----ASAILAEA 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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