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Conserved domains on  [gi|1816539596|ref|WP_163532380|]
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50S ribosomal protein L9 [Helicobacter suis]

Protein Classification

bL9 family ribosomal protein( domain architecture ID 11417507)

bL9 family ribosomal protein such as Escherichia coli Large ribosomal subunit protein bL9, a component of the ribosome large subunit (50S), which binds directly to the 23S rRNA

Gene Ontology:  GO:0003735|GO:0019843|GO:0006412
SCOP:  4001748

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
1-148 5.59e-51

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440128  Cd Length: 147  Bit Score: 159.03  E-value: 5.59e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:COG0359     1 MKVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEAKEAEELAEAEALAEKLEGLTVTIK 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQANHpISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVLKIDVVAE 148
Cdd:COG0359    81 AKAGEGGKLFGSVTTKDIAEALKAQG-IEIDKRKIELPGPIKTLGEYEVTVKLHPEVTATIKVNVVAE 147
 
Name Accession Description Interval E-value
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
1-148 5.59e-51

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 159.03  E-value: 5.59e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:COG0359     1 MKVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEAKEAEELAEAEALAEKLEGLTVTIK 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQANHpISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVLKIDVVAE 148
Cdd:COG0359    81 AKAGEGGKLFGSVTTKDIAEALKAQG-IEIDKRKIELPGPIKTLGEYEVTVKLHPEVTATIKVNVVAE 147
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
1-148 4.13e-44

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 141.75  E-value: 4.13e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAANKAAAARLKEVLELGTLTIS 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQAnHPISLDKKTLELK-TPIRSTGIYEIDVKLGLGVVGVLKIDVVAE 148
Cdd:TIGR00158  81 KKVGDEGKLFGSITTKQIADALKA-AGLDLDKKKIELPdGVIRTTGEHEVTIKLHEEVFAVLKVIVVPE 148
PRK14538 PRK14538
putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
1-146 3.83e-24

putative bifunctional signaling protein/50S ribosomal protein L9; Provisional


Pssm-ID: 173004 [Multi-domain]  Cd Length: 838  Bit Score: 96.82  E-value: 3.83e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANnFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:PRK14538  689 MEIILLTDIKNKGKKHEIIKVNNGYGN-FLIQNKKALLADKENLAKIKKKKILEQEKKRNHELLMKKLKSEIDNKKITLD 767
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQANHPISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVLKIDVV 146
Cdd:PRK14538  768 IQLGPKGKIYGKITLKQIVEEFHKIHNITIDRKKISLENEIISVGIYPVDVFLTDQIKATFFLNVI 833
Ribosomal_L9_C pfam03948
Ribosomal protein L9, C-terminal domain;
63-147 2.83e-23

Ribosomal protein L9, C-terminal domain;


Pssm-ID: 461104  Cd Length: 86  Bit Score: 86.65  E-value: 2.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596  63 AAKQELAKTLEGI-VLKISKKVGANGALFGSITKEEVVEVLQANHPISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVL 141
Cdd:pfam03948   1 AEAEALAEKLEGLtTVTIKAKAGEGGKLFGSVTTKDIAEALKKQLGIEIDKKKIELPEPIKTLGEYEVEVKLHPEVTATI 80

                  ....*.
gi 1816539596 142 KIDVVA 147
Cdd:pfam03948  81 KVEVVA 86
 
Name Accession Description Interval E-value
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
1-148 5.59e-51

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 159.03  E-value: 5.59e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:COG0359     1 MKVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEAKEAEELAEAEALAEKLEGLTVTIK 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQANHpISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVLKIDVVAE 148
Cdd:COG0359    81 AKAGEGGKLFGSVTTKDIAEALKAQG-IEIDKRKIELPGPIKTLGEYEVTVKLHPEVTATIKVNVVAE 147
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
1-148 4.13e-44

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 141.75  E-value: 4.13e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAANKAAAARLKEVLELGTLTIS 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQAnHPISLDKKTLELK-TPIRSTGIYEIDVKLGLGVVGVLKIDVVAE 148
Cdd:TIGR00158  81 KKVGDEGKLFGSITTKQIADALKA-AGLDLDKKKIELPdGVIRTTGEHEVTIKLHEEVFAVLKVIVVPE 148
PRK14538 PRK14538
putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
1-146 3.83e-24

putative bifunctional signaling protein/50S ribosomal protein L9; Provisional


Pssm-ID: 173004 [Multi-domain]  Cd Length: 838  Bit Score: 96.82  E-value: 3.83e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANnFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIVLKIS 80
Cdd:PRK14538  689 MEIILLTDIKNKGKKHEIIKVNNGYGN-FLIQNKKALLADKENLAKIKKKKILEQEKKRNHELLMKKLKSEIDNKKITLD 767
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1816539596  81 KKVGANGALFGSITKEEVVEVLQANHPISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVLKIDVV 146
Cdd:PRK14538  768 IQLGPKGKIYGKITLKQIVEEFHKIHNITIDRKKISLENEIISVGIYPVDVFLTDQIKATFFLNVI 833
Ribosomal_L9_C pfam03948
Ribosomal protein L9, C-terminal domain;
63-147 2.83e-23

Ribosomal protein L9, C-terminal domain;


Pssm-ID: 461104  Cd Length: 86  Bit Score: 86.65  E-value: 2.83e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596  63 AAKQELAKTLEGI-VLKISKKVGANGALFGSITKEEVVEVLQANHPISLDKKTLELKTPIRSTGIYEIDVKLGLGVVGVL 141
Cdd:pfam03948   1 AEAEALAEKLEGLtTVTIKAKAGEGGKLFGSVTTKDIAEALKKQLGIEIDKKKIELPEPIKTLGEYEVEVKLHPEVTATI 80

                  ....*.
gi 1816539596 142 KIDVVA 147
Cdd:pfam03948  81 KVEVVA 86
rpl9 CHL00160
ribosomal protein L9; Provisional
1-148 4.32e-19

ribosomal protein L9; Provisional


Pssm-ID: 214378  Cd Length: 153  Bit Score: 78.28  E-value: 4.32e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRYKASAQKRAQQEALELAAKQELAKTLEGIV-LKI 79
Cdd:CHL00160    6 IQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDLKLKEAKEKCLKVKQLLEEIQkFSV 85
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1816539596  80 SKKVGANGALFGSITKEEVVEVLQANHPISLDKKTLELKTpIRSTGIYEIDVKLGLGVVGVLKIDVVAE 148
Cdd:CHL00160   86 KKKVGENNQIFGSVTEKEISQIIKNKTNIDLEKQNIELPE-IKTIGIYNIEIKLTSDVKANINLQILPE 153
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
1-47 4.03e-18

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 72.41  E-value: 4.03e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1816539596   1 MKVLLLQDVKNLGKAGDVCEVKNGYANNFLLAKNLAELATTEVIRRY 47
Cdd:pfam01281   1 MKVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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