|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-426 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 726.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 1 MFESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 81 ELTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKK-PLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 161 PSSADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 241 PLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 321 EKVAKGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLGNIPDHLKQQVSQgKEVPRMIAIIGSMTKKERRNPNLLNGSRR 400
Cdd:COG0541 320 KKLKKG-KFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDE-KELKRIEAIINSMTPEERRNPDIINGSRK 397
|
410 420
....*....|....*....|....*.
gi 1817449679 401 ARIARGSGVTPADVNKLMKQYMQMEK 426
Cdd:COG0541 398 RRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-430 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 593.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 82 LTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 162 SSADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 242 LTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLAE 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 322 KVAKGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLGNIPDHLKQQVSQGKEVPRMIAIIGSMTKKERRNPNLLNGSRRA 401
Cdd:TIGR00959 321 KMKKG-QFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....*....
gi 1817449679 402 RIARGSGVTPADVNKLMKQYMQMEKMMSK 430
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-441 |
9.59e-161 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 461.21 E-value: 9.59e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 5 LTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDELTA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 85 VMGaEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSA 164
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLK-VGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 165 DQKPEAIVRAAIDDARKSfvDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 245 VVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLAEKVA 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 325 KGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLG-NIPDhlkQQVSQGKEVPRMI-AIIGSMTKKERRNPNLLNGSRRAR 402
Cdd:PRK00771 317 KG-KFTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPD---EALEVTEEKLKKYkAIMDSMTEEELENPEIINASRIRR 392
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1817449679 403 IARGSGVTPADVNKLMKQYMQMEKMMSKMAGGG--MKGMLR 441
Cdd:PRK00771 393 IARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKgkMGKLMK 433
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
4.19e-103 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 305.29 E-value: 4.19e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 101 AIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKK-VLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 1817449679 261 SVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
6.05e-97 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 289.69 E-value: 6.05e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 100 PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 180 RKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1817449679 260 LSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILD 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
1.35e-85 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 260.55 E-value: 1.35e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDARK 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 182 SFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1817449679 262 VRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-426 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 726.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 1 MFESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 81 ELTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKK-PLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 161 PSSADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 241 PLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 321 EKVAKGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLGNIPDHLKQQVSQgKEVPRMIAIIGSMTKKERRNPNLLNGSRR 400
Cdd:COG0541 320 KKLKKG-KFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDE-KELKRIEAIINSMTPEERRNPDIINGSRK 397
|
410 420
....*....|....*....|....*.
gi 1817449679 401 ARIARGSGVTPADVNKLMKQYMQMEK 426
Cdd:COG0541 398 RRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-430 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 593.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 2 FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 82 LTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 162 SSADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 242 LTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLAE 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 322 KVAKGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLGNIPDHLKQQVSQGKEVPRMIAIIGSMTKKERRNPNLLNGSRRA 401
Cdd:TIGR00959 321 KMKKG-QFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....*....
gi 1817449679 402 RIARGSGVTPADVNKLMKQYMQMEKMMSK 430
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-441 |
9.59e-161 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 461.21 E-value: 9.59e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 5 LTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDELTA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 85 VMGaEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSA 164
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLK-VGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 165 DQKPEAIVRAAIDDARKSfvDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 245 VVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLAEKVA 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 325 KGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLG-NIPDhlkQQVSQGKEVPRMI-AIIGSMTKKERRNPNLLNGSRRAR 402
Cdd:PRK00771 317 KG-KFTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPD---EALEVTEEKLKKYkAIMDSMTEEELENPEIINASRIRR 392
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1817449679 403 IARGSGVTPADVNKLMKQYMQMEKMMSKMAGGG--MKGMLR 441
Cdd:PRK00771 393 IARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKgkMGKLMK 433
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
4.19e-103 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 305.29 E-value: 4.19e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 101 AIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKK-VLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 1817449679 261 SVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
6.05e-97 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 289.69 E-value: 6.05e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 100 PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 180 RKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1817449679 260 LSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILD 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
1.35e-85 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 260.55 E-value: 1.35e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDARK 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 182 SFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1817449679 262 VRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
101-294 |
1.28e-78 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 242.66 E-value: 1.28e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 101 AIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKK-VLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAAL 260
Cdd:cd03115 80 LEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 1817449679 261 SVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:cd03115 160 SIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
9.43e-74 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 234.15 E-value: 9.43e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 1 MFESLTQRLSGTIERL--------RGRGRLTEEnireATREVRIALLEADVALPVVQALIERIKVRAVGQEVlkslTPGQ 72
Cdd:COG0552 1 FFERLKEGLSKTRSGLgeklkslfSGKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKKL----KDPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 73 ALIKVVRDELTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLA 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKS-VLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 153 EQVGVLFFPSSADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEI--------KALHAAvnPAETLFVVDAM 224
Cdd:COG0552 152 ERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELkkikrvikKLDPDA--PHEVLLVLDAT 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1817449679 225 TGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILD 296
Cdd:COG0552 230 TGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
5-427 |
8.75e-70 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 227.80 E-value: 8.75e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 5 LTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKvRAVGQEVLKSLTPGQALIK-VVRDELT 83
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIK-KKINLEDIASGINKRKLIQdAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 84 AVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSS 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFK-PALVCADTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 164 ADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 244 GVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLAEKV 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 324 AKGkKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLG-NIPDHLKQQVSQGKeVPRMIAIIGSMTKKERRNPNLL---NGSR 399
Cdd:TIGR01425 323 KEG-TFTLRDWYEQFQNLLKMGPLGNIMSMIPGLShPMMSKGNEEETSAK-IKVFMTIMDSMTDRELDSTAKTmlkDPSR 400
|
410 420
....*....|....*....|....*...
gi 1817449679 400 RARIARGSGVTPADVNKLMKQYMQMEKM 427
Cdd:TIGR01425 401 IRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-296 |
5.16e-64 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 209.18 E-value: 5.16e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 1 MFESLTQRLSGTIERLRGR--GRLTEENIREAT-REVRIALLEADVALPVVQALIERIKVRAVGQEVlkslTPGQALIKV 77
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGinGLFAKKKIDEDLlEELEELLIEADVGVETTEEIIEELRERVKRKNL----KDPEELKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 78 VRDELTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGV 157
Cdd:PRK10416 92 LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 158 LFF--PSSADqkPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEI--------KALHAAvnPAETLFVVDAMTGQ 227
Cdd:PRK10416 171 PVIaqKEGAD--PASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELkkikrvikKADPDA--PHEVLLVLDATTGQ 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1817449679 228 DAANTAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILD 296
Cdd:PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-295 |
2.53e-63 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 207.90 E-value: 2.53e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 21 RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDELTAVMG----AEASDLNLN 96
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSvgdlFDLIEEIKS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 97 VPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVvSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAI 176
Cdd:PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA-AGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 177 DDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARG 256
Cdd:PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKG 295
|
250 260 270
....*....|....*....|....*....|....*....
gi 1817449679 257 GAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRIL 295
Cdd:PRK14974 296 GAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLL 334
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
33-295 |
1.64e-60 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 199.02 E-value: 1.64e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 33 EVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDELTAVMGAEaSDLNLNVPA--PAIILMAGLQG 110
Cdd:TIGR00064 9 ELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKN-TDLELIVEEnkPNVILFVGVNG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 111 AGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDARKSFVDVLLVD 190
Cdd:TIGR00064 88 VGKTTTIAKLANKLKKQGKS-VLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLID 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 191 TAGRLAIDEAMMAEIKAL------HAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALSVRY 264
Cdd:TIGR00064 167 TAGRLQNKVNLMDELKKIkrvikkVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAY 246
|
250 260 270
....*....|....*....|....*....|.
gi 1817449679 265 ITGKPIKFVGVSEKPEGLDVFHPDRIASRIL 295
Cdd:TIGR00064 247 ELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
9.08e-59 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 191.25 E-value: 9.08e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDARK 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYK-VGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 182 SFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1817449679 262 VRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-294 |
1.63e-54 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 180.46 E-value: 1.63e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 101 AIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKK-VVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVN------PAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDA 254
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1817449679 255 RGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
328-426 |
8.98e-44 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 148.70 E-value: 8.98e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 328 KFDLNDMRDQLEQMQNMGGIGGLMDKLPGLGNIPDHLKQQvsqgKEVPRMIAIIGSMTKKERRNPNLLNGSRRARIARGS 407
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDSE----KKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGS 76
|
90
....*....|....*....
gi 1817449679 408 GVTPADVNKLMKQYMQMEK 426
Cdd:pfam02978 77 GTSVQEVNRLLKQFKQMKK 95
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
7-295 |
7.50e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 138.46 E-value: 7.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 7 QRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLtpgqalikvvRDELTAVM 86
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEEAWRAL----------LEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 87 GAEASDLnlnVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffPSSADQ 166
Cdd:COG1419 154 PVAEDPL---LDEGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGV---PVEVAY 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 167 KPEAIvRAAIDDARKsfVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDA-MTGQDAANTAKAFGDaLPLTGV 245
Cdd:COG1419 228 DPEEL-KEALERLRD--KDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFSS-LGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1817449679 246 VLTKTDGDARGGAALSVRYITGKPIKFVGVSEK-PEGLDVFHPDRIASRIL 295
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRvPEDIEVADPERLARLLL 354
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-292 |
3.16e-34 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 126.96 E-value: 3.16e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 103 ILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDARKS 182
Cdd:cd17876 3 IVFCGVNGVGKSTNLAKIAYWLLSNGFR-VLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 183 FVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDAL----------PLTGVVLTKTDG 252
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1817449679 253 -DARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIAS 292
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
1.02e-32 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 122.66 E-value: 1.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffPSSADQKPEAIvRAAIDDARK 181
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI---PVEVAEDPEDL-ADALERLSD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 182 sfVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMT-GQDAANTAKAFGdALPLTGVVLTKTDGDARGGAAL 260
Cdd:cd17873 78 --RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERFS-PLGYRGLILTKLDETTSLGSVL 154
|
170 180 190
....*....|....*....|....*....|....*
gi 1817449679 261 SVRYITGKPIKFVGVSEK-PEGLDVFHPDRIASRI 294
Cdd:cd17873 155 SVLAESQLPVSYVTTGQRvPEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
9.36e-21 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 85.98 E-value: 9.36e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1817449679 5 LTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKsltPGQALIKVVRDEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEKKLK---PPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
5.89e-20 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 83.75 E-value: 5.89e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1817449679 9 LSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGqEVLKSLTPGQALIKVVRDELTAVM 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
102-296 |
3.52e-19 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 89.18 E-value: 3.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKHLKEKRKK-KVMVVSADVYRPAAIEQLKTLAEQVGVlffPssadqkpeaiVRAAID--- 177
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKkKVALITLDTYRIGAVEQLKTYAKIMGI---P----------VEVVYDpke 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 178 --DARKSFV--DVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQ--DAANTAKAFGDaLPLTGVVLTKTD 251
Cdd:PRK05703 290 laKALEQLRdcDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKyeDLKDIYKHFSR-LPLDGLIFTKLD 368
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1817449679 252 GDARGGAALSVRYITGKPIKFVGV-SEKPEGLDVFHPDRIASRILD 296
Cdd:PRK05703 369 ETSSLGSILSLLIESGLPISYLTNgQRVPDDIKVANPEELVRLLLG 414
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-300 |
8.22e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 67.32 E-value: 8.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKH-LKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFpssadqkpEAIVRAAIDDAR 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRfAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--------EADSAESLLDLL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 181 KSFVD--VLLVDTAGRLAIDEAMMAEIKALHAAvNPAETLFVVDAMTG-QDAANTAKAFGDALPlTGVVLTKTDGDARGG 257
Cdd:PRK12727 424 ERLRDykLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHfSDLDEVVRRFAHAKP-QGVVLTKLDETGRFG 501
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1817449679 258 AALSVRYITGKPIKFVGVSEK-PEGLdvfHPDRIASRILDMGDV 300
Cdd:PRK12727 502 SALSVVVDHQMPITWVTDGQRvPDDL---HRANAASLVLRLEDL 542
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
38-193 |
1.95e-11 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 64.28 E-value: 1.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 38 LLEADVALPVVQALIERIKVRavgqevlkslTPGQALIKVVRDELTAVMGAEASDLNLnVPAPAIILMAGLQGAGKTTTV 117
Cdd:TIGR03499 143 LLEAGVSEELARELLEKLPED----------ADAEDAWRWLREALEGMLPVKPEEDPI-LEQGGVIALVGPTGVGKTTTL 211
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1817449679 118 GKLAKH-LKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffPSSADQKPEAIVRAAIDDARKsfvDVLLVDTAG 193
Cdd:TIGR03499 212 AKLAARfALEHGKKKVALITTDTYRIGAVEQLKTYAEILGI---PVKVARDPKELREALDRLRDK---DLILIDTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-251 |
2.90e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 64.99 E-value: 2.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 102 IILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQK-PEAIVRAAiddar 180
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKfKETLARDG----- 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1817449679 181 ksfVDVLLVDTAGRLAIDEAMMAEIKALHAAV---NPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTD 251
Cdd:PRK12724 300 ---SELILIDTAGYSHRNLEQLERMQSFYSCFgekDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
87-273 |
1.81e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 59.36 E-value: 1.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 87 GAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKkVMVVSADVYRPAAIEQLKTLAEQVGV-LFFPSSAD 165
Cdd:PRK12726 193 GKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRT-VGFITTDTFRSGAVEQFQGYADKLDVeLIVATSPA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 166 QKPEAIVRAAIDDArksfVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDA-MTGQDAANTAKAFGDaLPLTG 244
Cdd:PRK12726 272 ELEEAVQYMTYVNC----VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDG 346
|
170 180
....*....|....*....|....*....
gi 1817449679 245 VVLTKTDGDARGGAALSVRYITGKPIKFV 273
Cdd:PRK12726 347 FIITKMDETTRIGDLYTVMQETNLPVLYM 375
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
101-284 |
1.94e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 59.35 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 101 AIILMAGLQGAGKTTTVGKLAKH-LKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffPSSAdQKPEAIVRAAIDDA 179
Cdd:PRK14722 138 GVFALMGPTGVGKTTTTAKLAARcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV---PVHA-VKDGGDLQLALAEL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 180 RKSfvDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTA-----KAFGD---ALP-LTGVVLTKT 250
Cdd:PRK14722 214 RNK--HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVvqayrSAAGQpkaALPdLAGCILTKL 291
|
170 180 190
....*....|....*....|....*....|....*
gi 1817449679 251 DGDARGGAALSVRYITGKPIKFVGVSEK-PEGLDV 284
Cdd:PRK14722 292 DEASNLGGVLDTVIRYKLPVHYVSTGQKvPENLYV 326
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
24-270 |
1.11e-07 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 52.83 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 24 EENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKsltpgQALIKVVRDELTAVMGAEasdlNLNVPAPAII 103
Cdd:PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT-----EEVIEYILEDMSSHFNTE----NVFEKEVQTI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 104 LMAGLQGAGKTTTVGKLAkHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGvlfFPSSADQKPEAIVRAAIDDARKSF 183
Cdd:PRK06731 79 ALIGPTGVGKTTTLAKMA-WQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYFKEEAR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 184 VDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDA-MTGQDAANTAKAFGDaLPLTGVVLTKTDGDARGGAALSV 262
Cdd:PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233
|
....*...
gi 1817449679 263 RYITGKPI 270
Cdd:PRK06731 234 PAVSSAPI 241
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
103-270 |
1.68e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 53.15 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 103 ILMAGLQGAGKTTTVGKLAkHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFpssADQKPEAIVRAAIDDARKS 182
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMA-WQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALTYFKEEA 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 183 FVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDA-MTGQDAANTAKAFGDaLPLTGVVLTKTDGDARGGAALS 261
Cdd:PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
|
....*....
gi 1817449679 262 VRYITGKPI 270
Cdd:PRK11889 399 IPAVSSAPI 407
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-273 |
2.75e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 52.60 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 100 PAIILMAGLQGAGKTTTVGKLAK---HLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffPSSADQKPEAIVRAAI 176
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAiygINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI---PVKAIESFKDLKEEIT 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 177 DdaRKSFvDVLLVDTAGRLAIDEAMMAEIKA-LHAAVNPAETLFVVDAMTgqDAANTAKAFGDALPL--TGVVLTKTDGD 253
Cdd:PRK12723 251 Q--SKDF-DLVLVDTIGKSPKDFMKLAEMKElLNACGRDAEFHLAVSSTT--KTSDVKEIFHQFSPFsyKTVIFTKLDET 325
|
170 180
....*....|....*....|
gi 1817449679 254 ARGGAALSVRYITGKPIKFV 273
Cdd:PRK12723 326 TCVGNLISLIYEMRKEVSYV 345
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-212 |
4.16e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 49.29 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 100 PAIILMAGLQGAGKTTTVGKLAkHLKEKRKKKVMVVSADVYRPAAIEQLKtlaeqvGVLFFPSSADQKPEAIVRAAIDDA 179
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100 110
....*....|....*....|....*....|...
gi 1817449679 180 RKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAV 212
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
105-262 |
2.02e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 46.87 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 105 MAGLQGAGKTTTVGKLAKHLKEK-RKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffpSSADQKPEAIVRAAIDDARKSf 183
Cdd:PRK14721 196 LIGPTGVGKTTTTAKLAARAVIRhGADKVALLTTDSYRIGGHEQLRIYGKLLGV----SVRSIKDIADLQLMLHELRGK- 270
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1817449679 184 vDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALSV 262
Cdd:PRK14721 271 -HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDA 348
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
37-282 |
4.16e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 42.87 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 37 ALLEADVALPVVQALIERIkvrAVGQEVLKSLTpgqalikVVRDELTA---VMGAEASDLNlnvpAPAIILMAGLQGAGK 113
Cdd:PRK14723 133 WLLGAGFSGQLARALLERL---PVGYDRPAAMA-------WIRNELAThlpVLRDEDALLA----QGGVLALVGPTGVGK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 114 TTTVGKLAKH-LKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVlffpssadqkPEAIVRAAID--DARKSFVD--VLL 188
Cdd:PRK14723 199 TTTTAKLAARcVAREGADQLALLTTDSFRIGALEQLRIYGRILGV----------PVHAVKDAADlrFALAALGDkhLVL 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1817449679 189 VDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAAN-TAKAF--GDALPLTGVVLTKTDGDARGGAALSVRYI 265
Cdd:PRK14723 269 IDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYrhGAGEDVDGCIITKLDEATHLGPALDTVIR 348
|
250
....*....|....*...
gi 1817449679 266 TGKPIKFVGVSEK-PEGL 282
Cdd:PRK14723 349 HRLPVHYVSTGQKvPEHL 366
|
|
| |
