|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
2-1747 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 3067.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 2 MSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 81
Cdd:PRK13709 1 MSIAQVKSAGSAGNYYTDKDNYYVLGSMGERWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 82 LTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAV 161
Cdd:PRK13709 81 LTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQDPQLHTHAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 162 VANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQTI 241
Cdd:PRK13709 161 VANVTQHNGKWKTLSSDKVGKTGFIENVYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVPVEAFSSRSQEI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 242 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMLTLKETGFDIRAYRDAADQRAETRTQTPGPASQDGPDVQQAVT 321
Cdd:PRK13709 241 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQAPGPASQDGPDIQQAVT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 322 QAIAGLSERKVQFTYTDVLARTVGILPPEAGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 401
Cdd:PRK13709 321 QAIAGLSDRKVQFTYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 402 QNRVTIHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDER 481
Cdd:PRK13709 401 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDER 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 482 LSGELITGRRQLQEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQ 561
Cdd:PRK13709 481 LSGELITGRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTGTGSALMVLKDAGVNTYRWQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 562 GGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDS 641
Cdd:PRK13709 561 GGEQRPATVISEPDKNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 642 RSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKIPVADGERLRVT 721
Cdd:PRK13709 641 KSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVKISSLDSSWSLFRPEKMPVADGERLRVL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 722 GKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLESGWVETPGHSVSDSATVFASVTQMAMDNAT 801
Cdd:PRK13709 721 GKIPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHSVSDSATVFASVTQRAMDNAT 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 802 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLESAISHQKSALHTPAQQAIHLALPVLESKNLA 881
Cdd:PRK13709 801 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETDLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 882 FSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 961
Cdd:PRK13709 881 FSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 962 PGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1041
Cdd:PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1042 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13709 1041 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRSAA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1122 DVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMQkgeAF 1201
Cdd:PRK13709 1121 DVAIMKEIVRQTPELREAVYSLINRDVERALSGIESVKPSQVPRQEGAWAPESSVTEFSHPQEAKLAEAQQKAML---AF 1197
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1202 PDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWE 1281
Cdd:PRK13709 1198 PDVPMTLYEAIVRDYTGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWE 1277
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1282 NNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1361
Cdd:PRK13709 1278 AHRGALALVDNVYHRIAGIDKDDGLITLRDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1357
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1362 WTVTAVSGDSVTLSDGQQTRVIRPGQEQAEQHIDLAYAITAHGAQGASETFAIALEDTEGNRKLMAGFESAYVALSRMKQ 1441
Cdd:PRK13709 1358 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMKQ 1437
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1442 HVQVYTDNRQGWTDAINKAVQKGTAHDVLEPGADREVMNAQRLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRK 1521
Cdd:PRK13709 1438 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDTAAGRAVLRQAGLAGGDSPARFIAPGRK 1517
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1522 YPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1601
Cdd:PRK13709 1518 YPQPHVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1597
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1602 GVVVRIAGEGRPWNPRAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1681
Cdd:PRK13709 1598 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
|
1690 1700 1710 1720 1730 1740 1750
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1682 GKTELAVRDIAGQERDRTATSERETALPESVLRESQREREAVREVARENLLQERLQQME----RDLQKEK 1747
Cdd:PRK13709 1678 GKTEQAVRDIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMErdmvRDLQKEK 1747
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-1752 |
0e+00 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 1977.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1 MMSIAQVRSAGSAGNYYTDKDNYYVLGSM---GERWAGRGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQDGSNKH 76
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDEDNYYLKDSKslnNTRWLGKGAEQLGLLGkPVEKEQFEALLSGTLPDGTQLGRIDKGGIHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 77 RPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQ 155
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSEMEKdAAQARQTVDGKTEFINTRNLVFAMFRHKTSRENDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 156 LHTHAVVANVTQ-HNGEWKTLSSDKVGKTGFI----ENVYANQIAFGRLYREKLKEQVEALGYETEVVGKhGMWEMPGVP 230
Cdd:TIGR02760 161 LHTHAVVQNMTHdSDGKWRSLASDMKGQKGVIegfrERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQGVP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 231 ---VEAFSGRSQTIREAVGEDA--SLKSRDVAALDTRKSKQHVDPEVRMAEWMLTLKETGFDIRAYRDAADQRAETRTQT 305
Cdd:TIGR02760 240 eqvLTAFSKRRQQIDELVDEKGwsSAKARDIAALDTRKDKTYIDDETLMEKWQQECKDMGFDPHALVASSYKPENIVARF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 306 PGPASQDgpdVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPEAGVIER--ARAGIDEAISREQLIPLDREKGLFTSG 383
Cdd:TIGR02760 320 YGPSQID---AQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAGNKIIDEidIKKAIDELIANGQLIPLFTQKGLFTTQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 384 IHVLDELSVRALSRDIMKQNRVTIHPEKSV--PRTAGYSDAVSVLAQDRPSLAIVSGQGGAaGQRERVAELVMMAREQGR 461
Cdd:TIGR02760 397 TMLTNEKELIARTEGGKGALRVIVSKQKLSefALSPSNKDAVSTLFTSTKRFIIINGFGGT-GSTEIAQLLLHLASEQGY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 462 EVQIIAADRRSQMNLKQD-ERLSGELITGRRQLQEGM-------------AFTPGSTVIVDQGEKLSLKETLTLLDGAAR 527
Cdd:TIGR02760 476 EIQIITAGSLSAQELRQKiPRLASTFITWVKNLFNDDqdhtvqglldkssPFSNKDIFVVDEANKLSNNELLKLIDKAEQ 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 528 HNVQ-VLITDSGQRTG--TGSALMAMKDAGVNTYRWQGGEQRPATI-ISEPDRNVRYARLAGDFAASVKAGEESVAQVSG 603
Cdd:TIGR02760 556 HNSKlILLNDSAQRQGmsAGSAIDLLKEGGVTTYAWVDTKQQKASVeISEAVDKLRVDYIASAWLDLTPDRQNSQVLATT 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 604 VREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTL 683
Cdd:TIGR02760 636 HREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 684 RDAQGETQVVRISSL---DSSWSLFRPEKIPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVV-VPGRaepaSLP 759
Cdd:TIGR02760 716 KDAQGKTQKFKPSSLkdlERPFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGITLItEDGQ----TLH 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 760 VSDSPFTALKLESGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDET--RTAEKLARHPSFTVVS 837
Cdd:TIGR02760 792 LPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGVKQYALSKALLNSLNRSASRVDLFTDLDEKaqRYLEKTRGIPSAIVVV 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 838 EQIKARAGETL-------LESAISHQKSALHTPAQQ-----AIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELG 905
Cdd:TIGR02760 872 DQKQHLPDAVTtnntdksLEMDISDTLHALEAKAKDgknsiALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKA 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 906 GEINAQIKRGDLLYVDVAKGYGTG-LLVSRASYEAEKSILRHILEGKEAVTPLMERVPG----ELMETLTSGQRAATRMI 980
Cdd:TIGR02760 952 AEIAAALKNRPKLYRLLSAEYGDGtRWTTRAALRTETSILLHILPGKETVTPLATRAQVflnlELLERLTHGQKQAIHLI 1031
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 981 LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGEtp 1060
Cdd:TIGR02760 1032 ISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGG-- 1109
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQ--TPELRE 1138
Cdd:TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFDIIDTAIMKEIVRQnnSAELKA 1189
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1139 AVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHsQEAKLAEAQQKAMQKGEAFPDVPMTLYEAIVRDYTG 1218
Cdd:TIGR02760 1190 AHNSLDKRSNPKALELLKNQNPLQHELMQNAAMPEIASDEQGL-QKHDLAKLAVNTEKPKKAQPDATVTLYREIVKDYLS 1268
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1219 RTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWENNpDALALVDNVYHRIA 1298
Cdd:TIGR02760 1269 RTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEKG-AVLRLKKDAYLTIA 1347
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1299 GISKDDGLITLQDAE-GNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAV-SGDSVTLSD 1376
Cdd:TIGR02760 1348 DIDREHGKLTVADIKtGSERDILPRQLDHTFTSLYSDSELPLAKGDKIRLRATDKNRGIKANEVYTVTQVvNGLSVQLSK 1427
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1377 GQQTRVIRPGQeQAEQHIDLAYAITAHGAQGASETFAIALedtEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWT-- 1454
Cdd:TIGR02760 1428 VKNSLSLKPIQ-AKDKHWDYAYTRTADSAQGATYTFVIAL---IKGRLALTNYRSAYIDLTRASHHVELYTDNKEGTVks 1503
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1455 ---------------------------------------------------DAINKAV---------------------- 1461
Cdd:TIGR02760 1504 wkqreanktsaveteedyrpkqstqfnnraqpheepkyqqkngplkiqsaaEIINEALpayteslaktllgepntqksrr 1583
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1462 -----------------------------QKGTAHDVLEPGAD---REVMN----------------------------- 1480
Cdd:TIGR02760 1584 drytfgakgglkvsltgkyrglwhdfstgEKGTLIQLIEAKKGlsfKEALNqaasllgipqhyqlsinikapqlsntepq 1663
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1481 --------AQRLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAP-----GRKYPQPYVALPAFDRNGKSAGIWLNPLT 1547
Cdd:TIGR02760 1664 klnqlekrAKSLFQGSQELKGTLAEKYLKQHRGLASIDNDDIRFHPtvyssDKKNKHPALIAAARNEKGEITGIQITYLD 1743
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1548 TDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGE-SLLADNMQDGVRIARDNPDSGVVVRIAGegrpwnpraitggrvwg 1626
Cdd:TIGR02760 1744 KDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDrSYIAEGIETGLSIALANPKATVVIAVGG----------------- 1806
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1627 dipDNSVQPGAGNGEPVTAEVLAQRQAEEAIrreTERRADEIVRKMAENK-----------PDLPDGKTELAVRDIAGQE 1695
Cdd:TIGR02760 1807 ---KNNLSPIIPKFIPKNVVIVLDNDGEEAK---SQRAIEKIINKFKQDNisarivfpddwNDIGEEELQKQLMRAISSI 1880
|
1930 1940 1950 1960 1970 1980
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 1696 RDRTATSERETALPESVLRESQREREAVREVARENLLQERLQQM-----------ERDLQKEKTLGGD 1752
Cdd:TIGR02760 1881 EDKDIEIPKAIADFESVLKMPNSDIISIIDNARTEREKSDLEQIvanehksqqalERDLNKEFTPDKR 1948
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-281 |
3.49e-111 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 354.69 E-value: 3.49e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1 MMSIAQVRSAGSAGNYYTDKD--NYYVLG--SMGERWAGRGAEQLGL-QGSVDKDVFTRLLEGRLPDGADLSRMQDGSNK 75
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEKDldNYYSEDggTPAGRWFGKGAEALGLsGGAVDGERFKALLDGRLPDGERLRRRRKGAGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 76 HRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVR-QVEALASTRVMTDGQSETVL--TGNLVMALFNHDTSRDQ 152
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALEyLEERLAQTRVTVDGKGRTSLekTGNLVAALFRHDTSRAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 153 EPQLHTHAVVANVTQH-NGEWKTLSSdkvgktgfiENVYANQIAFGRLYREKLKEQVEALGYETEVVgKHGMWEMPGVP- 230
Cdd:NF041492 161 DPQLHTHAVVMNMTQRpDGKWRSLDN---------EELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPr 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 231 --VEAFSGRSQTIREAVGED----ASLKSRDVAALDTRKSKQ-HVDPEVRMAEWMLTL 281
Cdd:NF041492 231 eqIEAFSKRSQQIEEWLGENpatlASAALRQIAALDTRKAKEaDVDPEELEAEWREEA 288
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-283 |
6.41e-96 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 311.09 E-value: 6.41e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 10 AGSAGNYYTDKDNYYVL-GSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPD-GADLSRMQDGSNKHRPGYDLTFSAP 87
Cdd:pfam08751 1 AGDAYAYYTRQDDYYTEgGEPPGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRRRPRGRKHRAGFDLTFSAP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 88 KSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVT 166
Cdd:pfam08751 81 KSVSLLAAVGGDERIEAAHRAAVAEALAWLEKhAAQTRVGKDGGVEQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVANVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 167 Q-HNGEWKTLSSDKvgktgfienVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQTIR 242
Cdd:pfam08751 161 QrEDGKWRALDSRG---------LYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPeelIEAFSKRRAQIE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1820054010 243 EAVGE------DASLKSRDVAALDTRKSK-QHVDPEVRMAEWMLTLKE 283
Cdd:pfam08751 232 AELAElgathgRAPPAARQIAALETRPAKhEPRSLAELRARWREEAAE 279
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
937-1468 |
9.95e-51 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 188.65 E-value: 9.95e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 937 YEAEKSILRHILEGK------EAVTPLMERVPGELMETLTSGQRAATRMILETSdRFTVVQGYAGVGKTTqfraVMSAVN 1010
Cdd:COG0507 87 LEAEQRLARRLRRLArpaldeADVEAALAALEPRAGITLSDEQREAVALALTTR-RVSVLTGGAGTGKTT----TLRALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1011 MLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLH---DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYAL 1086
Cdd:COG0507 162 AALEALGLRVALAAPTGKAAKRLSeSTGIEARTIHRLLGlrpDSGRFRHNRDNPLTPADLLVVDEASMVDTRLMAALLEA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1087 IAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYS-LINR-DVERALSglesvkpsqvp 1164
Cdd:COG0507 242 LPRAGARLILVGDPDQLPSVGAGAVLRDLIESGTVPVVELTEVYRQADDSRIIELAhAIREgDAPEALN----------- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1165 rlegAWAPEHSVTEFSHSQEAKlaeaqqkamqkgeafpdvpmtlyEAIVRDYTGRtPEAREQTLIVTHLNEDRRVLNSMI 1244
Cdd:COG0507 311 ----ARYADVVFVEAEDAEEAA-----------------------EAIVELYADR-PAGGEDIQVLAPTNAGVDALNQAI 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1245 HDAREKAGELGKEQvmvpvlntanIRDGELRrlstwennpdalalvdnvyhriagiskddglitlqdaegntrlisprea 1324
Cdd:COG0507 363 REALNPAGELEREL----------AEDGELE------------------------------------------------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1325 vaegvtlytpdtIRVgtGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLS---DGQQTRVIRPGQeqaEQHIDLAYAIT 1401
Cdd:COG0507 384 ------------LYV--GDRVMFTRNDYDLGVFNGDIGTVLSIDEDEGRLTvrfDGREIVTYDPSE---LDQLELAYAIT 446
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 1402 AHGAQGAseTF-AIALEDTEGNRKLMAgFESAYVALSRMKQHVQVYTDNRQgWTDAINKAVQKGTAHD 1468
Cdd:COG0507 447 VHKSQGS--TFdRVILVLPSEHSPLLS-RELLYTALTRARELLTLVGDRDA-LARAVRRDTARATGLA 510
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
972-1130 |
2.01e-39 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 144.23 E-value: 2.01e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 972 GQRAATRMILetSDRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLHDT 1050
Cdd:cd17933 1 EQKAAVRLVL--RNRVSVLTGGAGTGKTTTLKALLAAL----EAEGKRVVLAAPTGKAAKRLSeSTGIEASTIHRLLGIN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1051 QLQQRS--GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGgRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKE 1128
Cdd:cd17933 75 PGGGGFyyNEENPLDADLLIVDEASMVDTRLMAALLSAIPAGA-RLILVGDPDQLPSVGAGNVLRDLIASKGVPTVELTE 153
|
..
gi 1820054010 1129 IV 1130
Cdd:cd17933 154 VF 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
2-1747 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 3067.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 2 MSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 81
Cdd:PRK13709 1 MSIAQVKSAGSAGNYYTDKDNYYVLGSMGERWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 82 LTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAV 161
Cdd:PRK13709 81 LTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQDPQLHTHAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 162 VANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQTI 241
Cdd:PRK13709 161 VANVTQHNGKWKTLSSDKVGKTGFIENVYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVPVEAFSSRSQEI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 242 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMLTLKETGFDIRAYRDAADQRAETRTQTPGPASQDGPDVQQAVT 321
Cdd:PRK13709 241 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQAPGPASQDGPDIQQAVT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 322 QAIAGLSERKVQFTYTDVLARTVGILPPEAGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 401
Cdd:PRK13709 321 QAIAGLSDRKVQFTYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 402 QNRVTIHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDER 481
Cdd:PRK13709 401 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDER 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 482 LSGELITGRRQLQEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQ 561
Cdd:PRK13709 481 LSGELITGRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTGTGSALMVLKDAGVNTYRWQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 562 GGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDS 641
Cdd:PRK13709 561 GGEQRPATVISEPDKNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 642 RSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKIPVADGERLRVT 721
Cdd:PRK13709 641 KSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVKISSLDSSWSLFRPEKMPVADGERLRVL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 722 GKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLESGWVETPGHSVSDSATVFASVTQMAMDNAT 801
Cdd:PRK13709 721 GKIPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHSVSDSATVFASVTQRAMDNAT 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 802 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLESAISHQKSALHTPAQQAIHLALPVLESKNLA 881
Cdd:PRK13709 801 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETDLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 882 FSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 961
Cdd:PRK13709 881 FSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 962 PGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1041
Cdd:PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1042 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13709 1041 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRSAA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1122 DVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMQkgeAF 1201
Cdd:PRK13709 1121 DVAIMKEIVRQTPELREAVYSLINRDVERALSGIESVKPSQVPRQEGAWAPESSVTEFSHPQEAKLAEAQQKAML---AF 1197
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1202 PDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWE 1281
Cdd:PRK13709 1198 PDVPMTLYEAIVRDYTGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWE 1277
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1282 NNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1361
Cdd:PRK13709 1278 AHRGALALVDNVYHRIAGIDKDDGLITLRDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1357
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1362 WTVTAVSGDSVTLSDGQQTRVIRPGQEQAEQHIDLAYAITAHGAQGASETFAIALEDTEGNRKLMAGFESAYVALSRMKQ 1441
Cdd:PRK13709 1358 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMKQ 1437
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1442 HVQVYTDNRQGWTDAINKAVQKGTAHDVLEPGADREVMNAQRLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRK 1521
Cdd:PRK13709 1438 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDTAAGRAVLRQAGLAGGDSPARFIAPGRK 1517
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1522 YPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1601
Cdd:PRK13709 1518 YPQPHVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1597
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1602 GVVVRIAGEGRPWNPRAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1681
Cdd:PRK13709 1598 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
|
1690 1700 1710 1720 1730 1740 1750
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1682 GKTELAVRDIAGQERDRTATSERETALPESVLRESQREREAVREVARENLLQERLQQME----RDLQKEK 1747
Cdd:PRK13709 1678 GKTEQAVRDIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMErdmvRDLQKEK 1747
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
134-1752 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 2973.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 134 VLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGY 213
Cdd:PRK14712 1 VLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 214 ETEVVGKHGMWEMPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMLTLKETGFDIRAYRD 293
Cdd:PRK14712 81 ETEVVGKHGMWEMPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 294 AADQRAETRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPEAGVIERARAGIDEAISREQLIPL 373
Cdd:PRK14712 161 AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 374 DREKGLFTSGIHVLDELSVRALSRDIMKQNRVTIHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV 453
Cdd:PRK14712 241 DREKGLFTSGIHMLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 454 MMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLQEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 533
Cdd:PRK14712 321 MMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 534 ITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQA 613
Cdd:PRK14712 401 ITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 614 IRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVV 693
Cdd:PRK14712 481 IRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQVV 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 694 RISSLDSSWSLFRPEKIPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLESG 773
Cdd:PRK14712 561 RISSLDSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPATLPVSDSPFTALKLENG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 774 WVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLESAI 853
Cdd:PRK14712 641 WVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAI 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 854 SHQKSALHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVS 933
Cdd:PRK14712 721 SLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAKGYGTGLLVS 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 934 RASYEAEKSILRHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP 1013
Cdd:PRK14712 801 RASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1014 ESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGR 1093
Cdd:PRK14712 881 ESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGR 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1094 AVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPE 1173
Cdd:PRK14712 961 AVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLERVKPSQVPRLEGAWAPE 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1174 HSVTEFSHSQEAKLAEAQQKAMQKGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGE 1253
Cdd:PRK14712 1041 HSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGE 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1254 LGKEQVMVPVLNTANIRDGELRRLSTWENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYT 1333
Cdd:PRK14712 1121 LGQVQVMVPVLNTANIRDGELRRLSTWENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYT 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1334 PDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQEQAEQHIDLAYAITAHGAQGASETFA 1413
Cdd:PRK14712 1201 PDTIRVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFA 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1414 IALEDTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINKAVQKGTAHDVLEPGADREVMNAQRLFSTARELRD 1493
Cdd:PRK14712 1281 IALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRD 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1494 VAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVA 1573
Cdd:PRK14712 1361 VAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVA 1440
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1574 LQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPRAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQA 1653
Cdd:PRK14712 1441 LQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQA 1520
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1654 EEAIRRETERRADEIVRKMAENKPDLPDGKTELAVRDIAGQERDRTATSERETALPESVLRESQREREAVREVARENLLQ 1733
Cdd:PRK14712 1521 EEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVREIAGQERDRAAITEREAALPESVLREPQRVREAVREVARENLLQ 1600
|
1610 1620
....*....|....*....|...
gi 1820054010 1734 ERLQQME----RDLQKEKTLGGD 1752
Cdd:PRK14712 1601 ERLQQMErdmvRDLQKEKTPGGD 1623
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-1752 |
0e+00 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 1977.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1 MMSIAQVRSAGSAGNYYTDKDNYYVLGSM---GERWAGRGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQDGSNKH 76
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDEDNYYLKDSKslnNTRWLGKGAEQLGLLGkPVEKEQFEALLSGTLPDGTQLGRIDKGGIHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 77 RPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQ 155
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSEMEKdAAQARQTVDGKTEFINTRNLVFAMFRHKTSRENDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 156 LHTHAVVANVTQ-HNGEWKTLSSDKVGKTGFI----ENVYANQIAFGRLYREKLKEQVEALGYETEVVGKhGMWEMPGVP 230
Cdd:TIGR02760 161 LHTHAVVQNMTHdSDGKWRSLASDMKGQKGVIegfrERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQGVP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 231 ---VEAFSGRSQTIREAVGEDA--SLKSRDVAALDTRKSKQHVDPEVRMAEWMLTLKETGFDIRAYRDAADQRAETRTQT 305
Cdd:TIGR02760 240 eqvLTAFSKRRQQIDELVDEKGwsSAKARDIAALDTRKDKTYIDDETLMEKWQQECKDMGFDPHALVASSYKPENIVARF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 306 PGPASQDgpdVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPEAGVIER--ARAGIDEAISREQLIPLDREKGLFTSG 383
Cdd:TIGR02760 320 YGPSQID---AQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAGNKIIDEidIKKAIDELIANGQLIPLFTQKGLFTTQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 384 IHVLDELSVRALSRDIMKQNRVTIHPEKSV--PRTAGYSDAVSVLAQDRPSLAIVSGQGGAaGQRERVAELVMMAREQGR 461
Cdd:TIGR02760 397 TMLTNEKELIARTEGGKGALRVIVSKQKLSefALSPSNKDAVSTLFTSTKRFIIINGFGGT-GSTEIAQLLLHLASEQGY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 462 EVQIIAADRRSQMNLKQD-ERLSGELITGRRQLQEGM-------------AFTPGSTVIVDQGEKLSLKETLTLLDGAAR 527
Cdd:TIGR02760 476 EIQIITAGSLSAQELRQKiPRLASTFITWVKNLFNDDqdhtvqglldkssPFSNKDIFVVDEANKLSNNELLKLIDKAEQ 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 528 HNVQ-VLITDSGQRTG--TGSALMAMKDAGVNTYRWQGGEQRPATI-ISEPDRNVRYARLAGDFAASVKAGEESVAQVSG 603
Cdd:TIGR02760 556 HNSKlILLNDSAQRQGmsAGSAIDLLKEGGVTTYAWVDTKQQKASVeISEAVDKLRVDYIASAWLDLTPDRQNSQVLATT 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 604 VREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTL 683
Cdd:TIGR02760 636 HREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 684 RDAQGETQVVRISSL---DSSWSLFRPEKIPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVV-VPGRaepaSLP 759
Cdd:TIGR02760 716 KDAQGKTQKFKPSSLkdlERPFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGITLItEDGQ----TLH 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 760 VSDSPFTALKLESGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDET--RTAEKLARHPSFTVVS 837
Cdd:TIGR02760 792 LPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGVKQYALSKALLNSLNRSASRVDLFTDLDEKaqRYLEKTRGIPSAIVVV 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 838 EQIKARAGETL-------LESAISHQKSALHTPAQQ-----AIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELG 905
Cdd:TIGR02760 872 DQKQHLPDAVTtnntdksLEMDISDTLHALEAKAKDgknsiALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKA 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 906 GEINAQIKRGDLLYVDVAKGYGTG-LLVSRASYEAEKSILRHILEGKEAVTPLMERVPG----ELMETLTSGQRAATRMI 980
Cdd:TIGR02760 952 AEIAAALKNRPKLYRLLSAEYGDGtRWTTRAALRTETSILLHILPGKETVTPLATRAQVflnlELLERLTHGQKQAIHLI 1031
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 981 LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGEtp 1060
Cdd:TIGR02760 1032 ISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGG-- 1109
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQ--TPELRE 1138
Cdd:TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFDIIDTAIMKEIVRQnnSAELKA 1189
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1139 AVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHsQEAKLAEAQQKAMQKGEAFPDVPMTLYEAIVRDYTG 1218
Cdd:TIGR02760 1190 AHNSLDKRSNPKALELLKNQNPLQHELMQNAAMPEIASDEQGL-QKHDLAKLAVNTEKPKKAQPDATVTLYREIVKDYLS 1268
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1219 RTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWENNpDALALVDNVYHRIA 1298
Cdd:TIGR02760 1269 RTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEKG-AVLRLKKDAYLTIA 1347
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1299 GISKDDGLITLQDAE-GNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAV-SGDSVTLSD 1376
Cdd:TIGR02760 1348 DIDREHGKLTVADIKtGSERDILPRQLDHTFTSLYSDSELPLAKGDKIRLRATDKNRGIKANEVYTVTQVvNGLSVQLSK 1427
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1377 GQQTRVIRPGQeQAEQHIDLAYAITAHGAQGASETFAIALedtEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWT-- 1454
Cdd:TIGR02760 1428 VKNSLSLKPIQ-AKDKHWDYAYTRTADSAQGATYTFVIAL---IKGRLALTNYRSAYIDLTRASHHVELYTDNKEGTVks 1503
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1455 ---------------------------------------------------DAINKAV---------------------- 1461
Cdd:TIGR02760 1504 wkqreanktsaveteedyrpkqstqfnnraqpheepkyqqkngplkiqsaaEIINEALpayteslaktllgepntqksrr 1583
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1462 -----------------------------QKGTAHDVLEPGAD---REVMN----------------------------- 1480
Cdd:TIGR02760 1584 drytfgakgglkvsltgkyrglwhdfstgEKGTLIQLIEAKKGlsfKEALNqaasllgipqhyqlsinikapqlsntepq 1663
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1481 --------AQRLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAP-----GRKYPQPYVALPAFDRNGKSAGIWLNPLT 1547
Cdd:TIGR02760 1664 klnqlekrAKSLFQGSQELKGTLAEKYLKQHRGLASIDNDDIRFHPtvyssDKKNKHPALIAAARNEKGEITGIQITYLD 1743
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1548 TDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGE-SLLADNMQDGVRIARDNPDSGVVVRIAGegrpwnpraitggrvwg 1626
Cdd:TIGR02760 1744 KDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDrSYIAEGIETGLSIALANPKATVVIAVGG----------------- 1806
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1627 dipDNSVQPGAGNGEPVTAEVLAQRQAEEAIrreTERRADEIVRKMAENK-----------PDLPDGKTELAVRDIAGQE 1695
Cdd:TIGR02760 1807 ---KNNLSPIIPKFIPKNVVIVLDNDGEEAK---SQRAIEKIINKFKQDNisarivfpddwNDIGEEELQKQLMRAISSI 1880
|
1930 1940 1950 1960 1970 1980
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 1696 RDRTATSERETALPESVLRESQREREAVREVARENLLQERLQQM-----------ERDLQKEKTLGGD 1752
Cdd:TIGR02760 1881 EDKDIEIPKAIADFESVLKMPNSDIISIIDNARTEREKSDLEQIvanehksqqalERDLNKEFTPDKR 1948
|
|
| relax_trwC |
TIGR02686 |
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) ... |
13-288 |
6.07e-138 |
|
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 274258 [Multi-domain] Cd Length: 283 Bit Score: 428.80 E-value: 6.07e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 13 AGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYDLTFSAPKSVSM 92
Cdd:TIGR02686 1 AADYYTDGDNYYLKDSDAGRWLGKGAQELGLSGEVEKKQFEALLEGRLPDGTRLGRIEDRQSKHRPGFDLTFSAPKSVSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 93 MAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQH-NG 170
Cdd:TIGR02686 81 LALVGGDPRLIDAHDEAVKFTLEQLEKeAAAARVTQDGEIEFEKTGNLVIALFRHDTSRANDPQLHTHAVVANMTRRsDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 171 EWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQTIREAVGE 247
Cdd:TIGR02686 161 KWRSLSSDKKGKHGFIEEIYKNQIYLGLLYRAKLANELKELGYQTRVYGKHGNFEIDGVPeevIEAFSKRRQQIEEWVAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1820054010 248 D--ASLKSRDVAALDTRKSKQHVDPEVRMAEWMLTLKETGFDI 288
Cdd:TIGR02686 241 RgwSLAKSRDTAALDTRKKKTVHDREALREEWQQTAKELGFDP 283
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-281 |
3.49e-111 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 354.69 E-value: 3.49e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1 MMSIAQVRSAGSAGNYYTDKD--NYYVLG--SMGERWAGRGAEQLGL-QGSVDKDVFTRLLEGRLPDGADLSRMQDGSNK 75
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEKDldNYYSEDggTPAGRWFGKGAEALGLsGGAVDGERFKALLDGRLPDGERLRRRRKGAGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 76 HRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVR-QVEALASTRVMTDGQSETVL--TGNLVMALFNHDTSRDQ 152
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALEyLEERLAQTRVTVDGKGRTSLekTGNLVAALFRHDTSRAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 153 EPQLHTHAVVANVTQH-NGEWKTLSSdkvgktgfiENVYANQIAFGRLYREKLKEQVEALGYETEVVgKHGMWEMPGVP- 230
Cdd:NF041492 161 DPQLHTHAVVMNMTQRpDGKWRSLDN---------EELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPr 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 231 --VEAFSGRSQTIREAVGED----ASLKSRDVAALDTRKSKQ-HVDPEVRMAEWMLTL 281
Cdd:NF041492 231 eqIEAFSKRSQQIEEWLGENpatlASAALRQIAALDTRKAKEaDVDPEELEAEWREEA 288
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-283 |
6.41e-96 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 311.09 E-value: 6.41e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 10 AGSAGNYYTDKDNYYVL-GSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPD-GADLSRMQDGSNKHRPGYDLTFSAP 87
Cdd:pfam08751 1 AGDAYAYYTRQDDYYTEgGEPPGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRRRPRGRKHRAGFDLTFSAP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 88 KSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVT 166
Cdd:pfam08751 81 KSVSLLAAVGGDERIEAAHRAAVAEALAWLEKhAAQTRVGKDGGVEQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVANVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 167 Q-HNGEWKTLSSDKvgktgfienVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQTIR 242
Cdd:pfam08751 161 QrEDGKWRALDSRG---------LYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPeelIEAFSKRRAQIE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1820054010 243 EAVGE------DASLKSRDVAALDTRKSK-QHVDPEVRMAEWMLTLKE 283
Cdd:pfam08751 232 AELAElgathgRAPPAARQIAALETRPAKhEPRSLAELRARWREEAAE 279
|
|
| TraI |
pfam07057 |
DNA helicase TraI; This family represents a conserved region approximately 130 residues long ... |
1434-1557 |
9.51e-82 |
|
DNA helicase TraI; This family represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI (EC:3.6.1.-). TraI is a bifunctional protein that catalyzes the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer.
Pssm-ID: 429268 [Multi-domain] Cd Length: 124 Bit Score: 264.16 E-value: 9.51e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1434 VALSRMKQHVQVYTDNRQGWTDAINKAVQKGTAHDVLEPGADREVMNAQRLFSTARELRDVAAGRAVLRQAGLAGGDSPA 1513
Cdd:pfam07057 1 VALSRMKQHVQVYTDNRQGWIKAINNAPQKGTAHDVLEPKNDREVMNADRLFSTARELRDVAAGRAVLRQAGLAQGDSPA 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1820054010 1514 RFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGF 1557
Cdd:pfam07057 81 RFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGRGLRGF 124
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
937-1468 |
9.95e-51 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 188.65 E-value: 9.95e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 937 YEAEKSILRHILEGK------EAVTPLMERVPGELMETLTSGQRAATRMILETSdRFTVVQGYAGVGKTTqfraVMSAVN 1010
Cdd:COG0507 87 LEAEQRLARRLRRLArpaldeADVEAALAALEPRAGITLSDEQREAVALALTTR-RVSVLTGGAGTGKTT----TLRALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1011 MLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLH---DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYAL 1086
Cdd:COG0507 162 AALEALGLRVALAAPTGKAAKRLSeSTGIEARTIHRLLGlrpDSGRFRHNRDNPLTPADLLVVDEASMVDTRLMAALLEA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1087 IAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYS-LINR-DVERALSglesvkpsqvp 1164
Cdd:COG0507 242 LPRAGARLILVGDPDQLPSVGAGAVLRDLIESGTVPVVELTEVYRQADDSRIIELAhAIREgDAPEALN----------- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1165 rlegAWAPEHSVTEFSHSQEAKlaeaqqkamqkgeafpdvpmtlyEAIVRDYTGRtPEAREQTLIVTHLNEDRRVLNSMI 1244
Cdd:COG0507 311 ----ARYADVVFVEAEDAEEAA-----------------------EAIVELYADR-PAGGEDIQVLAPTNAGVDALNQAI 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1245 HDAREKAGELGKEQvmvpvlntanIRDGELRrlstwennpdalalvdnvyhriagiskddglitlqdaegntrlisprea 1324
Cdd:COG0507 363 REALNPAGELEREL----------AEDGELE------------------------------------------------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1325 vaegvtlytpdtIRVgtGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLS---DGQQTRVIRPGQeqaEQHIDLAYAIT 1401
Cdd:COG0507 384 ------------LYV--GDRVMFTRNDYDLGVFNGDIGTVLSIDEDEGRLTvrfDGREIVTYDPSE---LDQLELAYAIT 446
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 1402 AHGAQGAseTF-AIALEDTEGNRKLMAgFESAYVALSRMKQHVQVYTDNRQgWTDAINKAVQKGTAHD 1468
Cdd:COG0507 447 VHKSQGS--TFdRVILVLPSEHSPLLS-RELLYTALTRARELLTLVGDRDA-LARAVRRDTARATGLA 510
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
972-1130 |
2.01e-39 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 144.23 E-value: 2.01e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 972 GQRAATRMILetSDRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFLHDT 1050
Cdd:cd17933 1 EQKAAVRLVL--RNRVSVLTGGAGTGKTTTLKALLAAL----EAEGKRVVLAAPTGKAAKRLSeSTGIEASTIHRLLGIN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1051 QLQQRS--GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGgRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKE 1128
Cdd:cd17933 75 PGGGGFyyNEENPLDADLLIVDEASMVDTRLMAALLSAIPAGA-RLILVGDPDQLPSVGAGNVLRDLIASKGVPTVELTE 153
|
..
gi 1820054010 1129 IV 1130
Cdd:cd17933 154 VF 155
|
|
| TraI_2B |
pfam18340 |
DNA relaxase TraI 2B/2B-like domain; This is the 2B and 2B-like sub-domain found in TraI (EC:5. ... |
633-712 |
1.15e-35 |
|
DNA relaxase TraI 2B/2B-like domain; This is the 2B and 2B-like sub-domain found in TraI (EC:5.99.1.2) a relaxase of F-family plasmids. It contains four domains; a trans-esterase domain that executes the nicking and covalent attachment of the T-strand to the relaxase, a vestigial helicase domain (carrying the 2B/2B-like sub-domain) that operates as an ssDNA-binding domain, an active 5' to 3' helicase domain, and a C-terminal domain that functions as a recruitment platform for relaxosome components. The 2B sub-domains in TraI are formed by residues 625-773 in the vestigial helicase domain and residues 1255-1397 in the active helicase domain. The 2B/2B-like sub-domain interacts with ssDNA where it contributes to the surface area where ssDNA bind. In other words the ssDNA-binding site is located in a groove between the 2B and 2B-like parts of the sub-domain. The sub-domain parts appear to act as clamps holding the ssDNA in place, resulting in the ssDNA being completely surrounded by protein. In previous studies, the 2B/2B-like sub-domain of the TraI vestigial helicase domain has been identified as translocation signal A (TSA) since it contains sequences essential for the recruitment of TraI to the T4S system. Thus, the 2B/2B-like sub-domain plays two major roles in relaxase function: (1) interacting with the DNA and possibly promoting high processivity and (2) mediating recruitment of the relaxosome to the T4S system.
Pssm-ID: 465718 [Multi-domain] Cd Length: 79 Bit Score: 130.47 E-value: 1.15e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 633 ALSPVWLDSRSRYLRDMYRPGMVMEQWNPeTRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKIPV 712
Cdd:pfam18340 1 TLTPVWLDSKNRRSRDSYREGMVLERWNG-ARKKQRFTIDRVTEKTNSLTLVDAKGETSTLKISEIDSHWRLFRSDKLEV 79
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
968-1156 |
1.52e-35 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 134.23 E-value: 1.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 968 TLTSGQRAATRMILETSDRFTVVQGYAGVGKTTqfraVMSAVNMLPESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASF 1046
Cdd:pfam13604 1 TLNAEQAAAVRALLTSGDRVAVLVGPAGTGKTT----ALKALREAWEAAGYRVIGLAPTGRAAKVLGeELGIPADTIAKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1047 LHDTQLQQRSGetpdfSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFR-LQQTRsaADVAI 1125
Cdd:pfam13604 77 LHRLGGRAGLD-----PGTLLIVDEAGMVGTRQMARLLKLAEDAGARVILVGDPRQLPSVEAGGAFRdLLAAG--IGTAE 149
|
170 180 190
....*....|....*....|....*....|..
gi 1820054010 1126 MKEIVRQT-PELREAVYSLINRDVERALSGLE 1156
Cdd:pfam13604 150 LTEIVRQRdPWQRAASLALRDGDPAEALDALA 181
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
934-1450 |
6.54e-22 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 102.96 E-value: 6.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 934 RASYEAEKSILRHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILEtSDRFTVVQGYAGVGKTTqfraVMSAVNMLP 1013
Cdd:TIGR02768 318 RLEAQMARSAEALSQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTG-SGDIAVVVGRAGTGKST----MLKAAREAW 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1014 ESERPRVVGLGPTHRAVGEMR-SAGVDAQTLASFlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGG 1092
Cdd:TIGR02768 393 EAAGYRVIGAALSGKAAEGLQaESGIESRTLASL----EYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1093 RAVASGDTDQLQAIAPGQPFRLQQTRSAAdvAIMKEIVRQTPE-LREAVYSLINRDVERALsglesvkpsqvprleGAWA 1171
Cdd:TIGR02768 469 KVVLVGDPEQLQPIEAGAAFRAIAERIGY--AELETIRRQREAwARQASLELARGDVEKAL---------------AAYR 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1172 PEHSVTEfshsqeaklAEAQQKAMqkgeafpdvpmtlyEAIVRDYTGRTPEAREQ--TLIVTHLNEDRRVLNSMIHDARE 1249
Cdd:TIGR02768 532 DHGHITI---------HDTREEAI--------------EQVVADWKQDLREANPAgsQIMLAHTRKDVRALNEAAREALI 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1250 KAGELGKEqvmvpvlntanirdgelrrlstwennpdalalvdnvyhriagiskddglITLQDAEGNTRLispreavaegv 1329
Cdd:TIGR02768 589 ERGELGES-------------------------------------------------ILFQTARGERKF----------- 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1330 tlytpdtirvGTGDRMRFTKSDRERGYVANSVWTVTAVSGD--SVTLSDGQQTRVirpgQEQAEQHIDLAYAITAHGAQG 1407
Cdd:TIGR02768 609 ----------AAGDRIVFLENNRDLGVKNGMLGTVEEIEDGrlVVQLDSGELVII----PQAEYDALDHGYATTIHKSQG 674
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1820054010 1408 ASETFAIALEDTEGNRKLmagfesAYVALSRMKQHVQVYTDNR 1450
Cdd:TIGR02768 675 VTVDRAFVLASKSMDRHL------AYVAMTRHRESVQLYAGKE 711
|
|
| ssDNA_TraI_N |
pfam18272 |
single-stranded DNA binding TraI N-terminal subdomain; This is a subdomain found in TraI ... |
575-627 |
1.81e-18 |
|
single-stranded DNA binding TraI N-terminal subdomain; This is a subdomain found in TraI present in E. coli. Tra1 is a conjugative relaxase that forms part of the Type IV secretion system. This subdomain, referred to as 2A, is located in N-terminal region of the translocation signal (TSA) domain. TSA is known to reside in a larger ssDNA-binding domain.
Pssm-ID: 408086 [Multi-domain] Cd Length: 53 Bit Score: 80.61 E-value: 1.81e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1820054010 575 DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHQ 627
Cdd:pfam18272 1 DKAQRYGRLAKEFVQAVREGEESVAQVSGPREQAVLAGMIRDELKEEGVLGRE 53
|
|
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
967-1255 |
3.94e-11 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 68.27 E-value: 3.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 967 ETLTSGQRAATRMILETSdRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAV-GEMRSAGVDAQTLAS 1045
Cdd:PRK13826 380 ARLSDEQKTAIEHVAGPA-RIAAVVGRAGAGKTTMMKAAREAW----EAAGYRVVGGALAGKAAeGLEKEAGIQSRTLSS 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1046 FlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAadVAI 1125
Cdd:PRK13826 455 W----ELRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIG--YAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1126 MKEIVRQTPE-LREAVYSLINRDVERALSGL--------ESVKPSQVPRLEGAWApehsvtefshsqeaklaeaqqkamq 1196
Cdd:PRK13826 529 LETIYRQREQwMRDASLDLARGNVGKALDAYrangrvigSRLKAEAVESLIADWN------------------------- 583
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1820054010 1197 kgeafpdvpmtlyeaivRDYtgrtpEAREQTLIVTHLNEDRRVLNSMihdAREKAGELG 1255
Cdd:PRK13826 584 -----------------RDY-----DPTKTTLILAHLRRDVRMLNEM---ARAKLVERG 617
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
973-1103 |
1.17e-09 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 58.00 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 973 QRAATRMILEtsDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERprVVGLGPTHRAVGEMRSA-GVDAQTLASFLH-- 1048
Cdd:pfam13245 1 QREAVRTALP--SKVVLLTGGPGTGKTTTIRHiVALLVALGGVSFP--ILLAAPTGRAAKRLSERtGLPASTIHRLLGfd 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1820054010 1049 -DTQLQQRSGETPDFSNTLFLLDESSMVgntDMARAYALIAA--GGGRAVASGDTDQL 1103
Cdd:pfam13245 77 dLEAGGFLRDEEEPLDGDLLIVDEFSMV---DLPLAYRLLKAlpDGAQLLLVGDPDQL 131
|
|
| SF1_C_RecD |
cd18809 |
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11. ... |
1396-1447 |
6.66e-08 |
|
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350196 [Multi-domain] Cd Length: 80 Bit Score: 51.41 E-value: 6.66e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1820054010 1396 LAYAITAHGAQGASETFAIALEDTEGNrklMAGFESAYVALSRMKQHVQVYT 1447
Cdd:cd18809 32 QAYAMTIHKSQGSEFDRVIVVLPTSHP---MLSRGLLYTALTRARKLLTLVG 80
|
|
| PRK13889 |
PRK13889 |
conjugal transfer relaxase TraA; Provisional |
969-1751 |
1.58e-05 |
|
conjugal transfer relaxase TraA; Provisional
Pssm-ID: 237546 [Multi-domain] Cd Length: 988 Bit Score: 50.07 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 969 LTSGQRAATRMILETSDrFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMRS-AGVDAQTLASFL 1047
Cdd:PRK13889 347 LSGEQADALAHVTDGRD-LGVVVGYAGTGKSAMLGVAREAW----EAAGYEVRGAALSGIAAENLEGgSGIASRTIASLE 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1048 HDTQlQQRSGETpdfSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAAdvAIMK 1127
Cdd:PRK13889 422 HGWG-QGRDLLT---SRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFRSIHERHGG--AEIG 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1128 EIVRQTPE-LREAVYSLINRDVERALsglesvkpsqvprlegawapeHSVTEFSHSQEAKLAEAQQKAmqkgeafpdvpm 1206
Cdd:PRK13889 496 EVRRQREDwQRDATRDLATGRTGEAL---------------------DAYEAHGMVHAAATREQARAD------------ 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1207 tLYEAIVRDytgRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGkEQVMVPVlntanirdgelrrlstwennpda 1286
Cdd:PRK13889 543 -LIDRWDRD---RQAAPDRSRIILTHTNDEVRALNEAARERMRAAGDLG-DDVRVTV----------------------- 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1287 lalvdnvyhriagiskddglitlqdaEGNTRlispreavaegvtlytpdtiRVGTGDRMRFTKSDRERGYVANSVWTVTA 1366
Cdd:PRK13889 595 --------------------------ERGER--------------------SFASGDRVMFLQNERGLGVKNGTLGTIEQ 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1367 VSGDSVT--LSDGQQTRVirpgQEQAEQHIDLAYAITAHGAQGAS--ETFAIAledTEGNRKlmagfESAYVALSRMKQH 1442
Cdd:PRK13889 629 VSAQSMSvrLDDGRSVAF----DLKDYDRIDHGYAATIHKAQGMTvdRTHVLA---TPGMDA-----HSSYVALSRHRDG 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1443 VQvytdnrqgwtdainkavqkgtahdvLEPGADrEVMNAQRLFSTARELR------DVAAGRAVLRQAGLAGGDSPARFI 1516
Cdd:PRK13889 697 VD-------------------------LHYGRD-DFADRDRLVRTLSRDRakdmasDYERADPAQSYAERRGITFRERVA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1517 APGRKypqpyvALPAfdrngKSAGIWlnplttdDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDgVRIAR 1596
Cdd:PRK13889 751 EIVRK------IVPE-----KLRGMF-------DGLRLPDPVPGPEAGRRPERESAAATTDAPARTVAADPEAA-LRQAR 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1597 dnpdSGVVVRIAgegrpwnpraitggRVWGDIPDNSVQPGAGNGEPVTAEVLAqRQAEEAIRRETERRADEIVRKMAENK 1676
Cdd:PRK13889 812 ----TRALVRHA--------------RAVDAIFRMQEQGGPVLPHQVKELQEA-RKAFEEVRPYGSHDAEAAYKKNPELA 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1677 PDLPDGKTELAVRDIAGQERDRTATSERETALPE---SVLRESQREREA---VREVARENLLQERLQQMERDLQKEKTLG 1750
Cdd:PRK13889 873 AEAASGRPARAIRALQLETELRTDPARRADRFVErwqKLDRASQRQYQAgdmSGYKATRAAMGDMAKSLERDPQLESLLA 952
|
.
gi 1820054010 1751 G 1751
Cdd:PRK13889 953 G 953
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
1645-1749 |
9.11e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 40.41 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820054010 1645 AEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLP--------DGKTELAVRDIAGQERDRTATSERETALPESVLRES 1716
Cdd:pfam15558 20 EQRMRELQQQAALAWEELRRRDQKRQETLERERRLLlqqsqeqwQAEKEQRKARLGREERRRADRREKQVIEKESRWREQ 99
|
90 100 110
....*....|....*....|....*....|...
gi 1820054010 1717 QREREAVRevaRENLLQERLQQMERDLQKEKTL 1749
Cdd:pfam15558 100 AEDQENQR---QEKLERARQEAEQRKQCQEQRL 129
|
|
| |
