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Conserved domains on  [gi|1821981972|ref|WP_165723086|]
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MULTISPECIES: OmpA family protein [unclassified Pseudoalteromonas]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
PubMed:  17559395

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
544-647 2.63e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 124.59  E-value: 2.63e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLG 623
Cdd:cd07185      6 FDFGSAELTPEAKPLL----DKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVG 80
                           90       100
                   ....*....|....*....|....
gi 1821981972  624 LGYAQPLINNKDEASRAQNRRVHI 647
Cdd:cd07185     81 YGESRPIASNDTEEGRAKNRRVEI 104
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
544-647 2.63e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 124.59  E-value: 2.63e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLG 623
Cdd:cd07185      6 FDFGSAELTPEAKPLL----DKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVG 80
                           90       100
                   ....*....|....*....|....
gi 1821981972  624 LGYAQPLINNKDEASRAQNRRVHI 647
Cdd:cd07185     81 YGESRPIASNDTEEGRAKNRRVEI 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
478-647 7.58e-30

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 121.43  E-value: 7.58e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  478 DAAGNALNIADLTTNIAALGQTTLQQFGTNIPNLAQAKRHYKTVANDYFEHLSAKEIVKDVVIEG-TFSLNSEQVTDDYR 556
Cdd:COG2885    124 LAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNvYFDFDSAELTPEAK 203
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  557 NTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVtQAGIDEARIEVLGLGYAQPLINNKDE 636
Cdd:COG2885    204 AAL----DELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLV-SKGIPASRITAVGYGESRPVASNDTE 278
                          170
                   ....*....|.
gi 1821981972  637 ASRAQNRRVHI 647
Cdd:COG2885    279 EGRAKNRRVEI 289
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
544-647 2.61e-23

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 96.09  E-value: 2.61e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTILQQseavIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLG 623
Cdd:TIGR02802    4 FDFDSSDLKSEAQATLDAH----AQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSK-GVSASQIETVS 78
                           90       100
                   ....*....|....*....|....
gi 1821981972  624 LGYAQPLINNKDEASRAQNRRVHI 647
Cdd:TIGR02802   79 YGKEKPAALGHDEAAWAKNRRAVL 102
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
544-642 9.99e-15

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 71.24  E-value: 9.99e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLK-VTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVL 622
Cdd:pfam00691    1 FDPGSSQLTPKAKATL----DEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNF-GVPPSRISVV 75
                           90       100
                   ....*....|....*....|
gi 1821981972  623 GLGYAQPLINNKDEASRAQN 642
Cdd:pfam00691   76 GYGATKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
543-647 1.25e-14

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 74.91  E-value: 1.25e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  543 TFSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVL 622
Cdd:PRK10510   115 TFDSSSATLKPAGANTL----TGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-GVDASRIRTQ 189
                           90       100
                   ....*....|....*....|....*
gi 1821981972  623 GLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK10510   190 GMGPANPIASNSTAEGKAQNRRVEI 214
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
544-647 2.63e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 124.59  E-value: 2.63e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLG 623
Cdd:cd07185      6 FDFGSAELTPEAKPLL----DKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVG 80
                           90       100
                   ....*....|....*....|....
gi 1821981972  624 LGYAQPLINNKDEASRAQNRRVHI 647
Cdd:cd07185     81 YGESRPIASNDTEEGRAKNRRVEI 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
478-647 7.58e-30

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 121.43  E-value: 7.58e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  478 DAAGNALNIADLTTNIAALGQTTLQQFGTNIPNLAQAKRHYKTVANDYFEHLSAKEIVKDVVIEG-TFSLNSEQVTDDYR 556
Cdd:COG2885    124 LAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNvYFDFDSAELTPEAK 203
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  557 NTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVtQAGIDEARIEVLGLGYAQPLINNKDE 636
Cdd:COG2885    204 AAL----DELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLV-SKGIPASRITAVGYGESRPVASNDTE 278
                          170
                   ....*....|.
gi 1821981972  637 ASRAQNRRVHI 647
Cdd:COG2885    279 EGRAKNRRVEI 289
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
544-647 2.61e-23

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 96.09  E-value: 2.61e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTILQQseavIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLG 623
Cdd:TIGR02802    4 FDFDSSDLKSEAQATLDAH----AQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSK-GVSASQIETVS 78
                           90       100
                   ....*....|....*....|....
gi 1821981972  624 LGYAQPLINNKDEASRAQNRRVHI 647
Cdd:TIGR02802   79 YGKEKPAALGHDEAAWAKNRRAVL 102
MotB COG1360
Flagellar motor protein MotB [Cell motility];
544-647 7.73e-16

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 76.81  E-value: 7.73e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRnTILQQseaVIKALKQNENlKVTVAGHTCDI----GNYDYNIALSERRAEAVKHILVtQAGIDEARI 619
Cdd:COG1360     63 FDSGSAELTPEGR-ELLDK---IAAVLAEVPN-RIRVEGHTDNVpistARFPSNWELSAARAAAVVRYLI-EGGVPPERL 136
                           90       100
                   ....*....|....*....|....*...
gi 1821981972  620 EVLGLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:COG1360    137 SAVGYGDTRPLAPNDTPEGRARNRRVEI 164
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
544-642 9.99e-15

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 71.24  E-value: 9.99e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLK-VTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVL 622
Cdd:pfam00691    1 FDPGSSQLTPKAKATL----DEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNF-GVPPSRISVV 75
                           90       100
                   ....*....|....*....|
gi 1821981972  623 GLGYAQPLINNKDEASRAQN 642
Cdd:pfam00691   76 GYGATKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
543-647 1.25e-14

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 74.91  E-value: 1.25e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  543 TFSLNSEQVTDDYRNTIlqqsEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVL 622
Cdd:PRK10510   115 TFDSSSATLKPAGANTL----TGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-GVDASRIRTQ 189
                           90       100
                   ....*....|....*....|....*
gi 1821981972  623 GLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK10510   190 GMGPANPIASNSTAEGKAQNRRVEI 214
motB PRK08944
flagellar motor protein MotB; Reviewed
542-654 2.16e-13

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 72.73  E-value: 2.16e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  542 GTFSLNSEQVTDDYRNTILQQSEAvikaLKQNENlKVTVAGHTCDI----GNYDYNIALSERRAEAVKHILVTQAGIDEA 617
Cdd:PRK08944   181 GSFPSGSAFLQPKFKPVVRKIGEL----LKDVPG-IITVSGHTDNVpissELYRSNWDLSSARAVAVAHELLKVKGFDPQ 255
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1821981972  618 RIEVLGLGYAQPLINNKDEASRAQNRRVHIaayAISQ 654
Cdd:PRK08944   256 RLKVVGMADTQPLVPNDTAENRARNRRVEI---IIEQ 289
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
544-644 7.38e-12

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 65.28  E-value: 7.38e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYrntiLQQSEAVIKALKQNENLKVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLG 623
Cdd:PRK10802    73 FDLDKYDIRSDF----AQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGK-GVSADQISIVS 147
                           90       100
                   ....*....|....*....|.
gi 1821981972  624 LGYAQPLINNKDEASRAQNRR 644
Cdd:PRK10802   148 YGKEKPAVLGHDEAAYAKNRR 168
PRK08126 PRK08126
hypothetical protein; Provisional
577-647 6.66e-11

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 66.26  E-value: 6.66e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821981972  577 KVTVAGHTCDI----GNYDYNIALSERRAEAVKHILvTQAGIDEARIEVLGLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK08126   355 KVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQML-QSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEI 428
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
512-647 1.51e-09

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 60.79  E-value: 1.51e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  512 AQAKRHYKTVANDYFEHLSakeivkDVVIEGTFSL--NSEQVTDDYRNTIL---------QQSEAVIKA----LKQNENl 576
Cdd:PRK09038    92 ARAQDQLKTIADDLRKALG------PLIESGQVTVrrNELWIEIEINSSLLfgsgdamlsDQAFAILEKvaevLKPAPN- 164
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821981972  577 KVTVAGHTCD--IGNYDY--NIALSERRAEAVKHILVTQaGIDEARIEVLGLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK09038   165 PIHVEGFTDNvpIATAQFpsNWELSAARAASVVRLLADD-GVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVL 238
PRK09040 PRK09040
hypothetical protein; Provisional
544-648 1.20e-07

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 53.87  E-value: 1.20e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  544 FSLNSEQVTDDYRNtILQQSEAVIKA-LKQNENLkVTVAGHTCDI----GNYDY--NIALSERRAEAVKHILVtQAGIDE 616
Cdd:PRK09040    92 FALNSDQLQPEGRE-LLKSLAGPLAAyLRARDEI-LMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALI-DAGVPA 168
                           90       100       110
                   ....*....|....*....|....*....|..
gi 1821981972  617 ARIEVLGLGYAQPLINNKDEASRAQNRRVHIA 648
Cdd:PRK09040   169 SSVFAAAFGSEQPVASNADDEGRAKNRRVEIA 200
PRK07033 PRK07033
DotU family type VI secretion system protein;
535-647 1.56e-07

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 55.83  E-value: 1.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  535 VKD-----VVI---EGTFSLNSEQVTDDYRNTILQQSEAVikalkQNENLKVTVAGHTCDI----GNYDYNIALSERRAE 602
Cdd:PRK07033   301 VRDeadrsVVTlrgDGLFASASTSVRDRYQPVLARVADAL-----NQVKGNVLVTGYSDNVpirtARFPSNWELSQARAQ 375
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1821981972  603 AVKHILVTQAGiDEARIEVLGLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK07033   376 AVRALLAARLG-QPERVTAEGRGDSDPVAPNDSAENRARNRRVEI 419
PRK09967 PRK09967
OmpA family protein;
582-647 5.48e-07

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 51.13  E-value: 5.48e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1821981972  582 GHTCDIGNYDYNIALSERRAEAVKHILVTQAGIDEARIEVLGLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK09967    90 GHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAV 155
PRK10808 PRK10808
outer membrane protein A; Reviewed
577-647 3.61e-06

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 50.84  E-value: 3.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  577 KVTVAGHTCDIGNYDYNIALSERRAEAVKHILVTQaGIDEARIEVLGLGYAQPLINNK-DEASR--------AQNRRVHI 647
Cdd:PRK10808   259 SVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSK-GIPADKISARGMGKSNPVTGNTcDNVKPraalidclAPDRRVEI 337
motB PRK08457
flagellar motor protein MotB; Reviewed
543-647 1.82e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 45.09  E-value: 1.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  543 TFSLNSEQVTDDYRNTILQQSEAVIKALKQNenLKVTVAGHT--CDIGNYDY--NIALSERRAEAVKHILVtQAGIDEAR 618
Cdd:PRK08457   125 LFENGSAEIINADMMDYLKRIAKIITKLPKQ--VKINVRGYTdnSPLNKSRYkdHYELAAARAYNVMKVLI-QYGINPNR 201
                           90       100
                   ....*....|....*....|....*....
gi 1821981972  619 IEVLGLGYAQPLINNKDEASRAQNRRVHI 647
Cdd:PRK08457   202 LSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
PRK09039 PRK09039
peptidoglycan -binding protein;
484-645 5.34e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.72  E-value: 5.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  484 LN--IADLTTNIAAL-------------GQTTLQQFGTNIpNLAQAKR-----HYKTvanDYF----EHLSAKEivkDVV 539
Cdd:PRK09039   142 LNqqIAALRRQLAALeaaldasekrdreSQAKIADLGRRL-NVALAQRvqelnRYRS---EFFgrlrEILGDRE---GIR 214
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821981972  540 IEGT-FSLNSEQVTDDYRNTILQQSEAVIK----ALKQ-------NENLKVTVAGHTCD-----IGNYDYNIALSERRAE 602
Cdd:PRK09039   215 IVGDrFVFQSEVLFPTGSAELNPEGQAEIAklaaALIElakeippEINWVLRVDGHTDNvplsgTGRFRDNWELSSARAI 294
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1821981972  603 AVKHILVTQaGIDEARIEVLGLGYAQPLINNKDEASRAQNRRV 645
Cdd:PRK09039   295 SVVKFLIAL-GVPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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