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Conserved domains on  [gi|1821985654|ref|WP_165725436|]
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MULTISPECIES: ribonuclease E inhibitor RraB [Pseudoalteromonas]

Protein Classification

ribonuclease E inhibitor RraB( domain architecture ID 10536389)

ribonuclease E inhibitor RraB globally modulates RNA abundance by binding to RNase E and regulating its endonucleolytic activity in a substrate-dependent manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RraB pfam06877
Regulator of ribonuclease activity B; This family of proteins regulate mRNA abundance by ...
 5-103 2.95e-20

Regulator of ribonuclease activity B; This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.


:

Pssm-ID: 429168  Cd Length: 98  Bit Score: 78.07  E-value: 2.95e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821985654   5 DDDNGQLLAEIAAAGIDLNKMHQVDFFILFEQEADAEKFAKEIVSDALVQNaELEKCKDTGVWEVITQVQMVPEHTLLGQ 84
Cdd:pfam06877   1 RDENREVLEALKEDGDDLDKPREIEHHFYFPDEEDLEKAAEELFKLGFEVE-DAEEDEEDGPWCLDLSREMALDYEAIDA 79

                          90
                  ....*....|....*....
gi 1821985654  85 AEQYIESIANSFNGYGDGW 103
Cdd:pfam06877  80 ITEELEELAKKFGGEYDGW 98
 
Name Accession Description Interval E-value
RraB pfam06877
Regulator of ribonuclease activity B; This family of proteins regulate mRNA abundance by ...
 5-103 2.95e-20

Regulator of ribonuclease activity B; This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.


Pssm-ID: 429168  Cd Length: 98  Bit Score: 78.07  E-value: 2.95e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821985654   5 DDDNGQLLAEIAAAGIDLNKMHQVDFFILFEQEADAEKFAKEIVSDALVQNaELEKCKDTGVWEVITQVQMVPEHTLLGQ 84
Cdd:pfam06877   1 RDENREVLEALKEDGDDLDKPREIEHHFYFPDEEDLEKAAEELFKLGFEVE-DAEEDEEDGPWCLDLSREMALDYEAIDA 79

                          90
                  ....*....|....*....
gi 1821985654  85 AEQYIESIANSFNGYGDGW 103
Cdd:pfam06877  80 ITEELEELAKKFGGEYDGW 98
 
Name Accession Description Interval E-value
RraB pfam06877
Regulator of ribonuclease activity B; This family of proteins regulate mRNA abundance by ...
 5-103 2.95e-20

Regulator of ribonuclease activity B; This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.


Pssm-ID: 429168  Cd Length: 98  Bit Score: 78.07  E-value: 2.95e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821985654   5 DDDNGQLLAEIAAAGIDLNKMHQVDFFILFEQEADAEKFAKEIVSDALVQNaELEKCKDTGVWEVITQVQMVPEHTLLGQ 84
Cdd:pfam06877   1 RDENREVLEALKEDGDDLDKPREIEHHFYFPDEEDLEKAAEELFKLGFEVE-DAEEDEEDGPWCLDLSREMALDYEAIDA 79

                          90
                  ....*....|....*....
gi 1821985654  85 AEQYIESIANSFNGYGDGW 103
Cdd:pfam06877  80 ITEELEELAKKFGGEYDGW 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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