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Conserved domains on  [gi|1821988196|ref|WP_165727525|]
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MULTISPECIES: CLCA_X family protein [unclassified Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LPD1 pfam18796
Large polyvalent protein-associated domain 1; This is an alpha helical domain with a conserved ...
187-256 2.53e-19

Large polyvalent protein-associated domain 1; This is an alpha helical domain with a conserved ExxARxxE motif that is found in polyvalent proteins of both conjugative elements and phages and prophages.


:

Pssm-ID: 465869  Cd Length: 78  Bit Score: 79.60  E-value: 2.53e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821988196 187 DKAHNMNYMSMPEELAARCFEACIE---QHSNIKNSFLVGGLQSSNL----IYPNIGHINKANEALNQYFELLGYAL 256
Cdd:pfam18796   2 DKKRGKGYWSSPEEMAARAFEAYVQdklSDQGIKNDYLVSGTKQSDEaklgLYPEGAERARINQAFDEYFAALGRAL 78
 
Name Accession Description Interval E-value
LPD1 pfam18796
Large polyvalent protein-associated domain 1; This is an alpha helical domain with a conserved ...
187-256 2.53e-19

Large polyvalent protein-associated domain 1; This is an alpha helical domain with a conserved ExxARxxE motif that is found in polyvalent proteins of both conjugative elements and phages and prophages.


Pssm-ID: 465869  Cd Length: 78  Bit Score: 79.60  E-value: 2.53e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821988196 187 DKAHNMNYMSMPEELAARCFEACIE---QHSNIKNSFLVGGLQSSNL----IYPNIGHINKANEALNQYFELLGYAL 256
Cdd:pfam18796   2 DKKRGKGYWSSPEEMAARAFEAYVQdklSDQGIKNDYLVSGTKQSDEaklgLYPEGAERARINQAFDEYFAALGRAL 78
 
Name Accession Description Interval E-value
LPD1 pfam18796
Large polyvalent protein-associated domain 1; This is an alpha helical domain with a conserved ...
187-256 2.53e-19

Large polyvalent protein-associated domain 1; This is an alpha helical domain with a conserved ExxARxxE motif that is found in polyvalent proteins of both conjugative elements and phages and prophages.


Pssm-ID: 465869  Cd Length: 78  Bit Score: 79.60  E-value: 2.53e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821988196 187 DKAHNMNYMSMPEELAARCFEACIE---QHSNIKNSFLVGGLQSSNL----IYPNIGHINKANEALNQYFELLGYAL 256
Cdd:pfam18796   2 DKKRGKGYWSSPEEMAARAFEAYVQdklSDQGIKNDYLVSGTKQSDEaklgLYPEGAERARINQAFDEYFAALGRAL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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