|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
49-790 |
9.13e-89 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 293.66 E-value: 9.13e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 49 EKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRkGTTTRNSALTVRGIGtisfsiAAEPSVAT 128
Cdd:COG1629 2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVT-SAGGGAGQISIRGFG------GGGNRVLV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 129 VVDGVVLGRSGQ-----AFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVIS 203
Cdd:COG1629 75 LVDGVPLNDPSGgdgglSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 204 GGlTDDLAASLTVFKGKFDGYIDNvynnekvNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccadlealPSGRNPD 283
Cdd:COG1629 155 GG-NGKLAYRLSASYRDSDGYRDN-------SDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQD--------SPGYLTL 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 284 SKAAPNSNGIvDGVADIDLDQRKVDHDYESrtidehsafsvqvdktiGDYTYTSITAQRSWDNTEYREGDFTSIAGDSSE 363
Cdd:COG1629 219 AALRPRGAMD-DGTNPYSNDTDDNTRDRYS-----------------LSLEYEHLGDGLKLSASAYYRYDDTDLDSDFTP 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 364 PVFGAPFQlhDIGAQQWDQFSQELRVTS--NLAGPFNYVAGLFYwnmdSQRNFTRDASCQNNGGqldsamafyaqnnlsg 441
Cdd:COG1629 281 TPADGGTL--EQTDFDNRTYGLELRLTYdlGFGGKHTLLVGLDY----QRQDLDGSGYPLDLGS---------------- 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 442 aeldaalndldgytqglgvscNANDIVSATAFMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTddevsYTHRRVSNDVYG 521
Cdd:COG1629 339 ---------------------GSLPTLTSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYD-----YVSYDVDDTVTG 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 522 RtgvgvrpatlnTDDEGKAEETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYNFNPDNDS---REISPEESDAYE 598
Cdd:COG1629 393 T-----------DSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSvgnPDLKPETSTNYE 461
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 599 IGYKYA--SREFVFNMALFRTEIEGFQANNFDCSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDE 676
Cdd:COG1629 462 LGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDD 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 677 FNCPAEvaagsctDRSGLDVPFSPDLKYSLTADYfietDHGFNVHINSSYIYTDEQYSDLPDNVGefnpaaLLPDYGILN 756
Cdd:COG1629 542 DTDGSA-------DLDGNRLPGVPPLTANLGLTY----EFPGGWSLGLGVRYVGDRYLDDANTQG------APGGYTLVD 604
|
730 740 750
....*....|....*....|....*....|....
gi 1821990313 757 ASVGLSFKDDaFRVSLIAKNLTDESYATTYSGDN 790
Cdd:COG1629 605 LGAGYRFGDN-LTLSLGVDNLFDKKYATSLSVRA 637
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
69-811 |
1.56e-55 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 202.30 E-value: 1.56e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 69 VSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGTisfsiaaePSVATVVDGV--VLGRSGQAFA--- 143
Cdd:cd01347 2 VSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTISIRGFGP--------DRTLVLVDGLplASSNYGRGVDlnt 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 144 -DLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGV---ISGGLTDD--LAASLTVF 217
Cdd:cd01347 74 iPPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSGSSGGGgfdVSGALADDgaFGARLYGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 218 KGKFDGYIDNVYNNeKVNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDCCADLEALPSGRNPDSKAAPNSNGIVDGV 297
Cdd:cd01347 154 YRDGDGTIDGDGQA-DDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNTNGDRDW 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 298 ADIDLDQRKVDHDYESRTIDEHsafsvqvdktigdytytsitaQRSWDNTEYREGDFTSIagdssepvfgapfqlhdiga 377
Cdd:cd01347 233 DYRDRYRKRASLGLEHDLNDTG---------------------WTLRANLSYSYTDNDGD-------------------- 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 378 qqwdqfsqelrvTSNLAGPFNYVAGLFYWNMDSQRNFTRDAScqnnggqldsamaFYAQNNLSGaeldaalnDLDGYTQG 457
Cdd:cd01347 272 ------------PLILNGGNNAAGGDLGRSGYSSERDTTQLG-------------FDAGLNAPF--------GTGPVAHT 318
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 458 LGVSCNANDivsatafMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSYTHRRVSNDVYGRTGvgvrpatlntdde 537
Cdd:cd01347 319 LTLGVEYRR-------EELDEKQTALYAQDTIELTDDLTLTLGLRYDHYDQDSKDTIAGGTTAKKSY------------- 378
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 538 gkaeeTNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGF-----NIYYNFNPDNDSREISPEESDAYEIGYKY-ASREFVFN 611
Cdd:cd01347 379 -----SHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLgelygGGSHGGTAAVGNPNLKPEKSKQYELGLKYdPGDGLTLS 453
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 612 MALFRTEIEGFQANNFDCSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEFNcpaevaagscTDR 691
Cdd:cd01347 454 AALFRIDIKNEIVSTPTNTGLGLVTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTD----------GAT 523
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 692 SGLDVPFSPDLKYSLTADYfieTDHGFNVHINSSYIYTDEQYsdlPDNVGEFNPAAlLPDYGILNASVGLSFKDDaFRVS 771
Cdd:cd01347 524 TGNRLPGIPKHTANLGLDY---ELPDEGLTAGGGVRYRGKQY---ADTANGNNTVK-VPGYTLVDLSASYQFTKN-LTLR 595
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 1821990313 772 LIAKNLTDESYATTYSGDNFRYQIPRDAERYFGVSFKARF 811
Cdd:cd01347 596 LGVNNLFDKDYYTSLSVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
64-787 |
2.30e-40 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 158.34 E-value: 2.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 64 EVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRK-GTTTRNSALTVRGIGtisfsiaAEPSVATV-VDGV-VLGRSGQ 140
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGsGGTTQFGNITIRGFG-------LEVDIDNVyLDGVpLLSRGNL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 141 AFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDD--LAASLTVFK 218
Cdd:TIGR01783 74 AIVDPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGADgtFRGRLNGAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 219 GKFDGYIDNvynnekvNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccadlealpsgrnPDSKAAPNSNGIvdgvA 298
Cdd:TIGR01783 154 QDGDSFYDG-------AGEETRLGATATDWQLDDRTLLRLGAYYQKERDR-------------GGYGGLPASGGT----S 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 299 DIDLDQRKVDHDYESRTIDEHSAFSVqvdktigDYTYTSITAQRSWD--NTEYREGDFTSiagdssEPVFGAPFQlhdig 376
Cdd:TIGR01783 210 GRDLSSDRYLGTSSNRNYDDREYLSY-------GLSLEYQFNDVWTGkqNLRYSYFDTDS------NQVQASGYS----- 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 377 aQQWDQFSQELRVTSNLAGPFNYVAGLfywnmdsQRNFTRDASCQN-NGGQLDSAMAFyaQNNLSGAELDAALNDLDGYT 455
Cdd:TIGR01783 272 -SDGGLFGRSLTVVNVKQDRVQIDAGL-------DGEFETGPIEHDlLLGVSYGQRTT--NRFNNTGYPSDNIYSLTATS 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 456 QGLGVScnaNDIVSATAfMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDdevsytHRRVSNDvygrtgvgvrpATLNTD 535
Cdd:TIGR01783 342 SARTDI---GDSPKDRA-LSSTTKALNGVALQRILLADKWTLTLGGRYDS------VDVKSNN-----------GVAGST 400
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 536 DEGKaeETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGfniYYNFNPDNDSREISPEESDAYEIGYKYA-SREFVFNMAL 614
Cdd:TIGR01783 401 GKRD--DSQFTPSLGVAYKPTDDWSLYASYAESFKPGG---YYPKGAGNSGDILEPEKGKNYELGVRYDlGDSLLATAAL 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 615 FRTEIEgfqaNNFDcSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEfncpaevaaGSCTDRSGL 694
Cdd:TIGR01783 476 FRITKD----NQLV-QDPVNGTFSVNAGKTRNRGVELEARGYLTPGLSLSAGYTYTDAEFTE---------DTNGDTQGN 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 695 DVPFSPDLKYSLTADYFIETDHgFNVHINSSYIYTDEQYSDlPDNVGEfnpaalLPDYGILNASVGLSF-KDDAFRVSLI 773
Cdd:TIGR01783 542 TVPFVPKHTASLWASYAPPVGD-NGLTLGGGVQYTGKAYVD-GGNTGK------VPSYTVVDLSVRYDLtKKKNLTLALN 613
|
730
....*....|....
gi 1821990313 774 AKNLTDESYATTYS 787
Cdd:TIGR01783 614 VNNLFDRDYYTSGY 627
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
304-810 |
1.91e-36 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 143.76 E-value: 1.91e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 304 QRKVDHDYESRTIDEHSAFSVQVDKTIGDYTYTSITAQRSWDNTEYREGDFTSIAGDSSEPVFGAPFQLHDIgaqqwDQF 383
Cdd:pfam00593 3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDG-----LSW 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 384 SQELRVTSNLAGPFNYVAGLFYWNMDSQRNFTRDASCQNNGGQLDSAMAFYAQNNLS-GAELDAALNDLDGYTQGLGVSC 462
Cdd:pfam00593 78 LSTLRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLlGVELRTAGLDYRRLDDDAYDPY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 463 NANDiVSATAFMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSYTHRRVSNDVYGRTgvgvrpatlntddegkaeE 542
Cdd:pfam00593 158 DPAN-PSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFSRS------------------Y 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 543 TNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYNFNPDNDSREIS-------PEESDAYEIGYKYASREFVFNMALF 615
Cdd:pfam00593 219 SAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAggnpdlkPETSDNYELGLKYDDGRLSLSLALF 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 616 RTEIEGFQANNFDCSD-GTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEFncpaevaagscTDRSGL 694
Cdd:pfam00593 299 YIDIKNLITSDPDGPGlGGTVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDAD-----------ADDTGN 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 695 DVPFSPDLKYSLTADYFIETDhGFNVHINSSYIYTDEQYSDLPDNVGEfnpaalLPDYGILNASVGLSFKDDaFRVSLIA 774
Cdd:pfam00593 368 PLPNVPRHTANLGLTYDFPLG-GWGARLGARYVGSGERRYGDAANTFK------TPGYTLVDLSAGYRLNKN-LTLRLGV 439
|
490 500 510
....*....|....*....|....*....|....*.
gi 1821990313 775 KNLTDESYATTYSGDNFRYQIPRDAERYFGVSFKAR 810
Cdd:pfam00593 440 NNLFDKYYKRYYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
44-673 |
1.07e-17 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 87.52 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 44 KNDTFEKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNsaLTVRGIGT----ISFS 119
Cdd:PRK13483 29 PDKTMETVVVTASGYEQQIRDAPASISVITREDLENRFYRDLTDALLDVPGVVVTGGGDRTD--ISLRGMGSqytlILVD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 120 IAAEPSVATVVDGVVLGRSGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSV--ETSFYQD---- 193
Cdd:PRK13483 107 GKRQSSRETRPNSDGPGVEQAWTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWQGEVrlDTTLQENsdsg 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 194 NEYRFKGVISGGLTDDLaASLTVFkGKFDGYI-DNVYNNekVNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDCCA- 271
Cdd:PRK13483 187 NVYQANFFVNGPLIKDL-LGLQLY-GQYTQREeDDIEGG--YRDKDARSLTAKLALTPNEDHDIMLEVGTSNQERDSTVg 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 272 -DLEALPSGRNPDSKAAPNSNgivdgvadidldqrkvDHDYESRTIdehsafsvqvdktigdytytSITAQRSWDnteyr 350
Cdd:PRK13483 263 kTVAPLAPGESCGRRGCPESS----------------TTEYERSTV--------------------SLSHTGRWD----- 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 351 egdftsiagdssepvFGapfqlhdigaqqwdqfsqelrvTSNLagpfnyvaglfYWNMDSQRNFTRDASCQNNGGQLDSA 430
Cdd:PRK13483 302 ---------------FG----------------------TSDT-----------YIQHEEFDNKSREMKIKNTDFQSSLV 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 431 MAFYAQNNLS-GAE-LDAALNDLDGytqglgvscnaNDIVSATafmSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEV 508
Cdd:PRK13483 334 APLGQEHTLTfGAAyNHQDLTDETS-----------NQISDLT---DISRTQWAVFSEDEWRIADDFALTGGLRLDHDEN 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 509 SYTHrrVSNDVYGrtgvgvrpatlntddegkaeetnvsgrlgmQYDLGDGQMVYGTYSQGYKGP--------------GF 574
Cdd:PRK13483 400 FGGH--VSPRVYG------------------------------VWNLAPSWTVKGGVSTGFRAPslrqttpdwgqvsrGG 447
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 575 NIYYnfNPDndsreISPEESDAYEIGYKY-ASREFVFNMALFRTEIEGfQANNFDCSDGTCI----------TRLTNAGD 643
Cdd:PRK13483 448 NIYG--NPD-----LKPETSLNKELGLYYdLGSGLTASLTVFYNEFKD-KITRVACPATQCTdgpnqfgadpTTYVNIDE 519
|
650 660 670
....*....|....*....|....*....|
gi 1821990313 644 VSTQGVEVDFMWAATESLTLTGGVAYIKAE 673
Cdd:PRK13483 520 AVTQGVEASLSYPITSTLSLSGNYTYTDSE 549
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
49-790 |
9.13e-89 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 293.66 E-value: 9.13e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 49 EKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRkGTTTRNSALTVRGIGtisfsiAAEPSVAT 128
Cdd:COG1629 2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVT-SAGGGAGQISIRGFG------GGGNRVLV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 129 VVDGVVLGRSGQ-----AFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVIS 203
Cdd:COG1629 75 LVDGVPLNDPSGgdgglSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 204 GGlTDDLAASLTVFKGKFDGYIDNvynnekvNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccadlealPSGRNPD 283
Cdd:COG1629 155 GG-NGKLAYRLSASYRDSDGYRDN-------SDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQD--------SPGYLTL 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 284 SKAAPNSNGIvDGVADIDLDQRKVDHDYESrtidehsafsvqvdktiGDYTYTSITAQRSWDNTEYREGDFTSIAGDSSE 363
Cdd:COG1629 219 AALRPRGAMD-DGTNPYSNDTDDNTRDRYS-----------------LSLEYEHLGDGLKLSASAYYRYDDTDLDSDFTP 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 364 PVFGAPFQlhDIGAQQWDQFSQELRVTS--NLAGPFNYVAGLFYwnmdSQRNFTRDASCQNNGGqldsamafyaqnnlsg 441
Cdd:COG1629 281 TPADGGTL--EQTDFDNRTYGLELRLTYdlGFGGKHTLLVGLDY----QRQDLDGSGYPLDLGS---------------- 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 442 aeldaalndldgytqglgvscNANDIVSATAFMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTddevsYTHRRVSNDVYG 521
Cdd:COG1629 339 ---------------------GSLPTLTSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYD-----YVSYDVDDTVTG 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 522 RtgvgvrpatlnTDDEGKAEETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYNFNPDNDS---REISPEESDAYE 598
Cdd:COG1629 393 T-----------DSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSvgnPDLKPETSTNYE 461
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 599 IGYKYA--SREFVFNMALFRTEIEGFQANNFDCSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDE 676
Cdd:COG1629 462 LGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDD 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 677 FNCPAEvaagsctDRSGLDVPFSPDLKYSLTADYfietDHGFNVHINSSYIYTDEQYSDLPDNVGefnpaaLLPDYGILN 756
Cdd:COG1629 542 DTDGSA-------DLDGNRLPGVPPLTANLGLTY----EFPGGWSLGLGVRYVGDRYLDDANTQG------APGGYTLVD 604
|
730 740 750
....*....|....*....|....*....|....
gi 1821990313 757 ASVGLSFKDDaFRVSLIAKNLTDESYATTYSGDN 790
Cdd:COG1629 605 LGAGYRFGDN-LTLSLGVDNLFDKKYATSLSVRA 637
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
44-766 |
7.29e-64 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 225.12 E-value: 7.29e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 44 KNDTFEKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSF-RKGTTTRNSALTVRGIGTisfsiaa 122
Cdd:COG4771 23 DATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVtRSGGRGGSSGISIRGLGG------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 123 ePSVATVVDGVVL------GRSGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEY 196
Cdd:COG4771 96 -DRVLVLIDGVPVnnpalgGGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSLGYGSNGNG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 197 RFKGVIS-GGLTDDLAASLTVFKGKFDGYIDNVYNNEKVN-GYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccadle 274
Cdd:COG4771 175 TYSGSLSlGGPGDKLSFLLSGSYRDRDGYLDYRNGGFVGNsGYERYNLNAKLGYRLSDNHRLSLSGGYSRQDRD------ 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 275 alpsgrnpdskaapnsngivDGVADIDLDQRKVDHDYESRTIDEHSAFSVQVDKTIGDYTYTSITAQRSWDNTEYREGDF 354
Cdd:COG4771 249 --------------------GGPPTLGDTEISSDNAGDRDTTTDRGNYSLRYNGDLGDNLDLSLYYSRTDRDSTNGSLGG 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 355 TSIAGDSSepvfgapfqlhdigaqQWDQFSQELRVTSNLAGPFNYVAGLFYWNMDSQRNFTRDAScqnnggqldsamafy 434
Cdd:COG4771 309 STGSFSDS----------------DDTTYGLELDLTYPLGGNHTLTLGAEYRYDDLDSSSFLGGA--------------- 357
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 435 aqnnlsgaeldaalndldgytqglgvscnandivsatafmSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSythrr 514
Cdd:COG4771 358 ----------------------------------------DASRDTYGLFAQDEWKLTDKLTLTAGLRYDYYSTF----- 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 515 vsndvygrtgvgvrpatlntddeGKAEETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYNFNPDNDSREIS---- 590
Cdd:COG4771 393 -----------------------GASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGTGTPGRYVLgnpd 449
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 591 --PEESDAYEIGYKY--ASREFVFNMALFRTEIEGFQANNFDCSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGG 666
Cdd:COG4771 450 lkPETSDNYELGLEYrlGNGGLSLSLTGFYTDIKDLIVLVPVGPGPGDVLQYENVGKARTYGLELELKYRLGKGLTLTAS 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 667 VAYIKAEIDEfncpaevaagsctDRSGLDVPFSPDLKYSLTADYfietDHGFNVHINSSYIYTDEQYSDLPDNVGEFNPa 746
Cdd:COG4771 530 YTYLDSKIDD-------------GDTGEPLPNVPPHKANLGLDY----RLPKWWLLLLLTRYYGGRYVTPPSGRLEGYT- 591
|
730 740
....*....|....*....|
gi 1821990313 747 allPDYGILNASVGLSFKDD 766
Cdd:COG4771 592 ---PGYTLLDLRASYKLTKN 608
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
57-811 |
1.82e-62 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 222.06 E-value: 1.82e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 57 KRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGTisfsiaaepSVATVVDGVVLG 136
Cdd:COG4774 1 KTDTPLLDTPQSVTVVTRELIEDQGATSLADALRNVPGVTFGAGEGGNGDSFSIRGFSA---------SGDIYVDGLRDP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 137 rsGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDDLAASLTV 216
Cdd:COG4774 72 --GQYRRDTFNLERVEVLKGPASVLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGPLGDDLAYRLNG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 217 FKGKFDGYIDNVYNnekvngyDREGARAVFKYEPEDDLSVKFIAEFYNADDDccADLeALPSGRNPDSKAAPNSN--GIV 294
Cdd:COG4774 150 MYRDSDSYRDGVDN-------DRWGIAPSLTWRLGDRTRLTLDYEYQDDDRT--PDY-GVPAVANGRPVDVDRSTfyGQP 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 295 DGVADIDLDQRKVDHDYEsrtIDEHSAFSVQVDKTIGDYTYTSITAQRSWDNTEYREGDFTSiagdssepvfgapfqlhd 374
Cdd:COG4774 220 DDYSDSETDSATLRLEHD---FNDNWTLRNALRYSDYDRDYRNTYPTGGNATGTVTRSAYRR------------------ 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 375 igAQQWDQFSQELRVTSNLA-GPF--NYVAGLFYWNMDSQRNFTRDAscqnnggqldsamafyaqnnlsgaeldAALNDL 451
Cdd:COG4774 279 --DQDNDTLSNQTDLTGKFDtGGVkhTLLAGVEYSREDSDNARYSGG---------------------------GTAPTV 329
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 452 DGYTQGLGVSCNANDIVSATAfmSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSYTHRRVSNDVYGRTgvgvrpat 531
Cdd:COG4774 330 NLYNPVYGAPVTGPTLGGADN--DSRTDTTGLYLQDTISLTDRWSLLAGLRYDRFDTDYTDRTTGATTSSYD-------- 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 532 lntddegkaeETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYnfnpDNDSREISPEESDAYEIGYKY--ASREFV 609
Cdd:COG4774 400 ----------DSAFSPRAGLVYKPTPNLSLYASYSTSFNPGGGAPSL----SNAGQALDPEKSRQYEVGVKWdlLDGRLS 465
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 610 FNMALFRTEIEGFQAnnfdcSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEFNCPAEVaagsct 689
Cdd:COG4774 466 LTAALFRIEKTNVRT-----TDPANPGVYVQTGEQRSRGVELEATGELTPGWSVLAGYTYLDAEITKSANAANV------ 534
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 690 drsGLDVPFSPDLKYSLTADYFIeTDHGFNVHINssYIYTDEQYSDLPDNVgefnpaaLLPDYGILNASVGLSFKDDaFR 769
Cdd:COG4774 535 ---GNRLPNVPRHSASLWTTYDL-PLPGLTLGGG--VRYVGSRYADAANTV-------KLPSYTRFDAGASYRLNKN-LT 600
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1821990313 770 VSLIAKNLTDESYATTYSGDNFRYQIprdAERYFGVSFKARF 811
Cdd:COG4774 601 LRLNVNNLTDKRYYASAYGSGYVTPG---APRTVLLSASYRF 639
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
69-811 |
1.56e-55 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 202.30 E-value: 1.56e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 69 VSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGTisfsiaaePSVATVVDGV--VLGRSGQAFA--- 143
Cdd:cd01347 2 VSVITAEDIEKQPATSLADLLRRIPGVSVTRGGGGGGSTISIRGFGP--------DRTLVLVDGLplASSNYGRGVDlnt 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 144 -DLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGV---ISGGLTDD--LAASLTVF 217
Cdd:cd01347 74 iPPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSGSSGGGgfdVSGALADDgaFGARLYGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 218 KGKFDGYIDNVYNNeKVNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDCCADLEALPSGRNPDSKAAPNSNGIVDGV 297
Cdd:cd01347 154 YRDGDGTIDGDGQA-DDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNTNGDRDW 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 298 ADIDLDQRKVDHDYESRTIDEHsafsvqvdktigdytytsitaQRSWDNTEYREGDFTSIagdssepvfgapfqlhdiga 377
Cdd:cd01347 233 DYRDRYRKRASLGLEHDLNDTG---------------------WTLRANLSYSYTDNDGD-------------------- 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 378 qqwdqfsqelrvTSNLAGPFNYVAGLFYWNMDSQRNFTRDAScqnnggqldsamaFYAQNNLSGaeldaalnDLDGYTQG 457
Cdd:cd01347 272 ------------PLILNGGNNAAGGDLGRSGYSSERDTTQLG-------------FDAGLNAPF--------GTGPVAHT 318
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 458 LGVSCNANDivsatafMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSYTHRRVSNDVYGRTGvgvrpatlntdde 537
Cdd:cd01347 319 LTLGVEYRR-------EELDEKQTALYAQDTIELTDDLTLTLGLRYDHYDQDSKDTIAGGTTAKKSY------------- 378
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 538 gkaeeTNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGF-----NIYYNFNPDNDSREISPEESDAYEIGYKY-ASREFVFN 611
Cdd:cd01347 379 -----SHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLgelygGGSHGGTAAVGNPNLKPEKSKQYELGLKYdPGDGLTLS 453
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 612 MALFRTEIEGFQANNFDCSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEFNcpaevaagscTDR 691
Cdd:cd01347 454 AALFRIDIKNEIVSTPTNTGLGLVTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTD----------GAT 523
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 692 SGLDVPFSPDLKYSLTADYfieTDHGFNVHINSSYIYTDEQYsdlPDNVGEFNPAAlLPDYGILNASVGLSFKDDaFRVS 771
Cdd:cd01347 524 TGNRLPGIPKHTANLGLDY---ELPDEGLTAGGGVRYRGKQY---ADTANGNNTVK-VPGYTLVDLSASYQFTKN-LTLR 595
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 1821990313 772 LIAKNLTDESYATTYSGDNFRYQIPRDAERYFGVSFKARF 811
Cdd:cd01347 596 LGVNNLFDKDYYTSLSVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
50-811 |
1.31e-52 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 195.11 E-value: 1.31e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 50 KIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGTISFSIaaepsvatv 129
Cdd:COG4773 50 KSSSTATKLDTPLRETPQSVSVVTRQLIEDQGATTLDDALRNVPGVTVSSYDGGGRDSFSIRGFSIDNYLR--------- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 130 vDGVVLGRSGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDD 209
Cdd:COG4773 121 -DGLPLGGFGGGQPDTANLERVEVLKGPAGLLYGAGSPGGLVNLVTKRPTAEPQGEVSLSAGSWDTYRATADVGGPLNED 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 210 --LAASLTVFKGKFDGYIDNVYNnekvngyDREGARAVFKYEPEDDLSVKFIAEFYNADddccadlealpsgrnpdSKAA 287
Cdd:COG4773 200 gtLRYRLNAAYEDGDSFRDGVDN-------RRTLIAPSLDWDLTDDTTLTLGAEYQDDD-----------------STGD 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 288 PNSNGIVDGVADIDLDQRkVDHDYESRTIDEHSAFsVQVDKTIGDYTYTSITAQRSWDNTEYREGDFTSIAGDSSEPVfg 367
Cdd:COG4773 256 RGFLPLDGTLLDLPRSTN-LGEPWDYYDTETTTLF-AELEHRFNDDWSLRANARYSDSDRDGRSAYAYGAPDAATGTL-- 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 368 apfqlhDIGAQQWDQFSQELRVTSNLAGPFNY-------VAGLFYWNMDSQRNftrdascQNNGGQLDsamaFYAQNNLS 440
Cdd:COG4773 332 ------TRYASARDGDSRSDSLDANLNGKFETgglehtlLVGADYSRYDSDSD-------SATAGTIN----IYNPVYGN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 441 GAELDAALNDLDGYTQGLGVscnandivsataFMSTEFNnwaafadgtydLSEDLRVLFGIRYTddevsythrRVSNDVY 520
Cdd:COG4773 395 LPEPDFDASDTDTTTRQTGL------------YAQDQIS-----------LTDRLSLLLGGRYD---------WYETDST 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 521 GRTGvgvrpatlntDDEGKAEETNVSGRLGMQYDLGDGQMVYGTYSQGYKgPGFNIyynfnpDNDSREISPEESDAYEIG 600
Cdd:COG4773 443 NRLG----------GSTTSYDDSAFTPRAGLVYDLTPGLSLYASYSESFE-PQSGA------DNNGNPLDPETGKQYEAG 505
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 601 YKY--ASREFVFNMALFRTEIEgfqanNFDCSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEFN 678
Cdd:COG4773 506 VKGelFDGRLNATLAVFDITQK-----NVATTDPDNPNFYVQVGEVRSRGVELELSGELTPGLNLIAGYTYTDAKITKDA 580
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 679 cpaevaagscTDRSGLDVPFSPDLKYSLTADYFIETDHGFNVHINSSYIYTDEQYSDLPDNVGefnpaalLPDYGILNAS 758
Cdd:COG4773 581 ----------DALEGKRLTNVPRHTASLWTTYRFPSGALKGLGLGGGVRYVGERYGDAANTFT-------LPSYTLVDAG 643
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1821990313 759 VGLSFkDDAFRVSLIAKNLTDESYattYSGDNFRYQIPRDAERYFGVSFKARF 811
Cdd:COG4773 644 ARYDL-GKNWTLQLNVNNLFDKKY---YASSGSRGYVYYGAPRNVRLSLSYKF 692
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
44-808 |
6.51e-49 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 183.98 E-value: 6.51e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 44 KNDTFEKIVVT-SQKRTQSLNEVPVAVSVLNSDQI-NSAFANNMEGLQSlVPSVSFRK--GTTTRNSaLTVRGigtisFS 119
Cdd:COG4772 19 AATTLETVVVTgSRAAEARLKDVPGSVSVVDREELeNQAATSLREVLRR-VPGVNVQEedGFGLRPN-IGIRG-----LG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 120 IAAEPSVATVVDGVVLGR------SGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQD 193
Cdd:COG4772 92 PRRSRGITLLEDGIPIAPapygdpAAYYFPDLERMERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAFGGELRVTGGSF 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 194 NEYRFKGVISGGLTD-DLAASLTVFKGkfDGYIDNvynnekvNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccad 272
Cdd:COG4772 172 GYRRTHASVGGTVGNfGYLVEYSRKRG--DGFRDN-------SGFDINDFNAKLGYRLSDRQELTLKFQYYDEDAN---- 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 273 leaLPSG-------RNPDSKAAPNsngivdgvadidlDQRKVDHDyesrtidehsAFSVQVDKTIGDYTYTSITAQRSWD 345
Cdd:COG4772 239 ---TPGGltdaqfdADPRQSYRPA-------------DQFDTRRT----------QLSLRYEHQLSDNTTLTTTAYYNDF 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 346 NTEYREGDFTSIAGDSSEPVFGAPFQLHDIGAQQwdqfsqELRVTSNLAG-PFNYVAGLFYWNMDSQRNFTRDASCQNNG 424
Cdd:COG4772 293 SRNWYIRQNTADPNTPGLGLRGNPRGYRSYGIEP------RLTHRFELGGvPHTLEVGLRYHREEEDRKQYVNTYGQGRS 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 425 GqldsamAFYAQNNLSGAEldaalndldgytqglgvscnandivsatafmstefnNWAAFADGTYDLSEDLRVLFGIRYt 504
Cdd:COG4772 367 G------AGLRRDRRFSAD------------------------------------ALAAYAQNRFELTGRLTLTPGLRY- 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 505 ddevSYTHRRVSNDVYGRTgvgvrpatlNTDDEGKAEETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNiyYNFNPDN 584
Cdd:COG4772 404 ----EHIRRDRTDRYSTRT---------GGDDSGSNSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFG--DLAYGNG 468
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 585 DSREISPEESDAYEIGYKYASREFV-FNMALFRTEIEGFQANNFdcSDGTCITRLTNAGDVSTQGVEV----DFMWAATE 659
Cdd:COG4772 469 GNPDLKPEKSWNYELGTRGRIGNGLsAEVALFYIDYDNELGSCS--AAGGDRSTFTNAGETRHQGLELaldyDLLKGGGL 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 660 SLTLTGGVAYIKAEIDEFNCPAEvaagsctdrSGLDVPFSPDLKYSLTADYfietDHGfNVHINSSYIYTDEQYSDlPDN 739
Cdd:COG4772 547 GLPLFAAYTYTDAEFTSDFGPVF---------AGNRLPYVPRHQLTAGLGY----EHG-GWTANLNGRYVSEQFTD-AAN 611
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821990313 740 VGEFNPAALLPDYGILNASVGLSFKDDaFRVSLIAKNLTDESYAT---TYSGDNFRYQIPRDAerYFGVSFK 808
Cdd:COG4772 612 TVADGSFGKIPSYTVLDLSASYDFGKN-LSLFAGVNNLFDKRYIAsraPNYAAGIRPGPPRTV--YAGLRLK 680
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
64-787 |
2.30e-40 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 158.34 E-value: 2.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 64 EVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRK-GTTTRNSALTVRGIGtisfsiaAEPSVATV-VDGV-VLGRSGQ 140
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGsGGTTQFGNITIRGFG-------LEVDIDNVyLDGVpLLSRGNL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 141 AFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDD--LAASLTVFK 218
Cdd:TIGR01783 74 AIVDPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGADgtFRGRLNGAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 219 GKFDGYIDNvynnekvNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccadlealpsgrnPDSKAAPNSNGIvdgvA 298
Cdd:TIGR01783 154 QDGDSFYDG-------AGEETRLGATATDWQLDDRTLLRLGAYYQKERDR-------------GGYGGLPASGGT----S 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 299 DIDLDQRKVDHDYESRTIDEHSAFSVqvdktigDYTYTSITAQRSWD--NTEYREGDFTSiagdssEPVFGAPFQlhdig 376
Cdd:TIGR01783 210 GRDLSSDRYLGTSSNRNYDDREYLSY-------GLSLEYQFNDVWTGkqNLRYSYFDTDS------NQVQASGYS----- 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 377 aQQWDQFSQELRVTSNLAGPFNYVAGLfywnmdsQRNFTRDASCQN-NGGQLDSAMAFyaQNNLSGAELDAALNDLDGYT 455
Cdd:TIGR01783 272 -SDGGLFGRSLTVVNVKQDRVQIDAGL-------DGEFETGPIEHDlLLGVSYGQRTT--NRFNNTGYPSDNIYSLTATS 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 456 QGLGVScnaNDIVSATAfMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDdevsytHRRVSNDvygrtgvgvrpATLNTD 535
Cdd:TIGR01783 342 SARTDI---GDSPKDRA-LSSTTKALNGVALQRILLADKWTLTLGGRYDS------VDVKSNN-----------GVAGST 400
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 536 DEGKaeETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGfniYYNFNPDNDSREISPEESDAYEIGYKYA-SREFVFNMAL 614
Cdd:TIGR01783 401 GKRD--DSQFTPSLGVAYKPTDDWSLYASYAESFKPGG---YYPKGAGNSGDILEPEKGKNYELGVRYDlGDSLLATAAL 475
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 615 FRTEIEgfqaNNFDcSDGTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEfncpaevaaGSCTDRSGL 694
Cdd:TIGR01783 476 FRITKD----NQLV-QDPVNGTFSVNAGKTRNRGVELEARGYLTPGLSLSAGYTYTDAEFTE---------DTNGDTQGN 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 695 DVPFSPDLKYSLTADYFIETDHgFNVHINSSYIYTDEQYSDlPDNVGEfnpaalLPDYGILNASVGLSF-KDDAFRVSLI 773
Cdd:TIGR01783 542 TVPFVPKHTASLWASYAPPVGD-NGLTLGGGVQYTGKAYVD-GGNTGK------VPSYTVVDLSVRYDLtKKKNLTLALN 613
|
730
....*....|....
gi 1821990313 774 AKNLTDESYATTYS 787
Cdd:TIGR01783 614 VNNLFDRDYYTSGY 627
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
304-810 |
1.91e-36 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 143.76 E-value: 1.91e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 304 QRKVDHDYESRTIDEHSAFSVQVDKTIGDYTYTSITAQRSWDNTEYREGDFTSIAGDSSEPVFGAPFQLHDIgaqqwDQF 383
Cdd:pfam00593 3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDG-----LSW 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 384 SQELRVTSNLAGPFNYVAGLFYWNMDSQRNFTRDASCQNNGGQLDSAMAFYAQNNLS-GAELDAALNDLDGYTQGLGVSC 462
Cdd:pfam00593 78 LSTLRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLlGVELRTAGLDYRRLDDDAYDPY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 463 NANDiVSATAFMSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSYTHRRVSNDVYGRTgvgvrpatlntddegkaeE 542
Cdd:pfam00593 158 DPAN-PSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFSRS------------------Y 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 543 TNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYNFNPDNDSREIS-------PEESDAYEIGYKYASREFVFNMALF 615
Cdd:pfam00593 219 SAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAggnpdlkPETSDNYELGLKYDDGRLSLSLALF 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 616 RTEIEGFQANNFDCSD-GTCITRLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDEFncpaevaagscTDRSGL 694
Cdd:pfam00593 299 YIDIKNLITSDPDGPGlGGTVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDAD-----------ADDTGN 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 695 DVPFSPDLKYSLTADYFIETDhGFNVHINSSYIYTDEQYSDLPDNVGEfnpaalLPDYGILNASVGLSFKDDaFRVSLIA 774
Cdd:pfam00593 368 PLPNVPRHTANLGLTYDFPLG-GWGARLGARYVGSGERRYGDAANTFK------TPGYTLVDLSAGYRLNKN-LTLRLGV 439
|
490 500 510
....*....|....*....|....*....|....*.
gi 1821990313 775 KNLTDESYATTYSGDNFRYQIPRDAERYFGVSFKAR 810
Cdd:pfam00593 440 NNLFDKYYKRYYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
51-266 |
1.64e-27 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 112.66 E-value: 1.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 51 IVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRK-GTTTRNSALTVRGIGTisfsiaaePSVATV 129
Cdd:COG4206 1 VVVTATRLEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSsGGPGSAASISIRGLGS--------NQTLVL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 130 VDGVVLGRSGQAFADLY-----DVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISG 204
Cdd:COG4206 73 IDGVPLNDPSLGGVDLSlippdDIERIEVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821990313 205 GlTDDLAASLTVFKGKFDGYIDNVYNNEKVNGYDREGARAVFKYEPEDDLSVKFIAEFYNAD 266
Cdd:COG4206 153 G-AGKFSYSLSASYRRSDGYRYNDPDLRNNDGYENTSLNARLGYKLGDNGSLSLSGGYSDSE 213
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
48-811 |
1.43e-24 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 109.40 E-value: 1.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 48 FEKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGtisfsiaaEPSVA 127
Cdd:TIGR01785 1 LDTVTVTATRTRQVLSEAPASVSVISGEQIESKQANNLADALNTVPGVDVTGGGRPPGQSINIRGLQ--------DNRVL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 128 TVVDGVVLG------RSGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPS------YDTTGSVETSfYQ--D 193
Cdd:TIGR01785 73 VVVDGARQNyqrggaHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAdllrpgQLFGGLAKLS-YGsnN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 194 NEYRFKGVISGGLTDDLAASLTVFKGKFDGYIDNVYNNEKVNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDccadl 273
Cdd:TIGR01785 152 NSFGGSVAVAGRLDDNLDALVAATYRDGGNYRNGNKEEATNSAYVQKNLLAKLGWQLDDAQRLEFSYFTTEGSLD----- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 274 eaLPSGRNPDSKAAPNSNGIVDGVADIDLDqrkvdhdyesrtidehsaFSVQVDKTIGDYTYTSITAQRSWDNTEYREGD 353
Cdd:TIGR01785 227 --EAQNSGPGTEYVLGSSSTLLASSTRDRS------------------ATLTYNWTPEDNPWLDATASLYYNRTENDNDR 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 354 FTSIAGDSSEpvfgapFQLHDIGAQQWDQFSQELRVTSNLAgpfnyvaglfyWNMDSQRNFTRDASCQNNGGQLDsamaf 433
Cdd:TIGR01785 287 SARGVGREEG------YQYTTYGATLQNTSRFDVASWSTLT-----------YGVDWMKDKRRTESFDPNSVTTI----- 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 434 yAQNNLSGAEldaalndldgytqglgvscnandivsatafmstefNNWAAFA-DGTYDLSEDLRVLFGIRYTddevsyth 512
Cdd:TIGR01785 345 -VPNPPSAKE-----------------------------------YFFGLFLqDNIPLLDDRLTLSAGLRYD-------- 380
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 513 rRVSNDvygrtgvgvrPATLNTDDEGKAEETNVSGRLGMQYDLGDGQMVYGTYSQG------------YKGPGFNIYYNF 580
Cdd:TIGR01785 381 -HYKLS----------PKTTADTEAVDRSYSRWSPSLGLSYKPVDWLTLYASYSQGfrapsidelygtGDHPGTPGGYTF 449
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 581 NPDNDSReisPEESDAYEIGYKY-------ASREFVFNMALFRTEIEGFQANNFDCSDG-----TCITRLTNAGDVSTQG 648
Cdd:TIGR01785 450 APNPNLK---PETSKTWELGANLsfdnlllDNDQLQFKVAYFYNDVKDFIDLTIGVTDNvtagmNNITQYVNIDGARIRG 526
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 649 VEVDFMWAATeSLTLTGGVAYIKAEidefNCPAEVAAGSCtdrsgldvpfsPDLKYSLTADYFIEtDHGFNVHINSSYiY 728
Cdd:TIGR01785 527 IEASASYDAG-LWATGLSYGYTIGK----DQNTNQWLSNI-----------PPLKLVVTVGYRFP-DRRLDLGAKAAY-Y 588
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 729 TDEQYSDLPDNVGEfNPAALLPDYGILNASVGLSFKD-DAFRVSLIAKNLTDESYattYSGDNFRYQIPrdaERYFGVSF 807
Cdd:TIGR01785 589 ERQSESPTTEDVAA-NGLLTTPGYTVVDLYATYQPNAvKGLTVRFGVNNLTDRKY---TPAQSVPGAGP---GRNFKGSV 661
|
....
gi 1821990313 808 KARF 811
Cdd:TIGR01785 662 KYQF 665
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
49-811 |
3.21e-24 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 108.65 E-value: 3.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 49 EKIVVT----SQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGtisfsiaaEP 124
Cdd:TIGR01786 1 DTITVTatrtADPQRRDLSVTPASVSVISREQLKSQQVRNLRDLLRYEPGVSVVEGGRGGSQGINIRGLD--------KN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 125 SVATVVDGV----VLGRSGQAFADLYDVD-----RIEVLRGPQGTLFGKNASAGVVNITTKDPS------YDTTGSVETS 189
Cdd:TIGR01786 73 RVAVLVDGIrqntSYGGQGSTFYAINSIDpelikSIEIVKGASSSLYGSGALGGVVAFRTKDAAdllkpgKDLGGLSKLG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 190 fYQDNEYRFKGVIS-GGLTDDLAASLTVFK--------GKFDGYIDNVYNNE-KVNGYDREGARAVFKYEPEDDLSVKFI 259
Cdd:TIGR01786 153 -YSSANNRFTQSVAaAGRNDDVDALVQATYrrghelknGNKANIGNESKRSKpNPSDYKSQSFLAKLGWQLNDAHRLGLS 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 260 AEFYNADDDccadleaLPSGRNPDSKAAPNSNgivdgvaDIDLDQRKVdhdYESRTIDEHSAFsvqvdktigDYTYTSIT 339
Cdd:TIGR01786 232 LEYTQTDYD-------EPEMTNTSYLTKPLGA-------PLLSSTVVL---GDSKTRDRRTGL---------DYELNPDN 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 340 aqrSWDNTEYregdftsiagdssepvfgapfqlhdiGAQQWDQFSQELRVTSNLAGPFNYVAGLfywnmdSQRNFTRDAS 419
Cdd:TIGR01786 286 ---SWLDTVK--------------------------LALDKQYIQLYNYLNATSASDYPGVDKN------GRYKDKYDYY 330
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 420 CQNNGGQLDSAMAFYAQNNLSGaeLDAALNDLDGYTQGLGVSCNANDIVSATAFMST-EFNNWAAFADGTYDLSEDLRVL 498
Cdd:TIGR01786 331 TLGFDTNNKIEFSVHSLSLTYG--LDRFKDKVSTGDSRRNLPTAAYNLYGYEGENRPvKGSNFGLFLQDNIKLGDWLSLS 408
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 499 FGIRYtdDEVSYthrrvsndvygrtgvgvRPATLNTDDEGKAEET--NVSGRLGMQYDLGDGQMVYGTYSQG-------- 568
Cdd:TIGR01786 409 AGLRY--DHYKT-----------------DPKADESKDYGAISKTysRWSPSLGLTYKPTPWLTLYYSYSQGfrapsfde 469
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 569 ----YKGPGFNIYYNF-NPDndsreISPEESDAYEIGYKYASREFVFNMALFRTEIEGF--------QANNFDCSDGTCI 635
Cdd:TIGR01786 470 lygtGAHPGGGPYTFLpNPN-----LKPETSKNWEIGINLHFDQLDFKVSYFRNDYKDFidlgigvtAKGNMAQVGSNTI 544
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 636 TRLTNAGDVSTQGVEV------DFMWAATESLTLTGGVAYIKAEIDEFNcPAEVAAGSCTDRSGLDVPFsPDLKYSLTAd 709
Cdd:TIGR01786 545 TNYVNIDNARIRGIELsgrydlGSFFSGPDGWTTTLKYGYTKGKDSDTN-PWLNAITPLKVVLGLGYDH-PDEKWGVGL- 621
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 710 YFIETDHGFNVHINSSYIYTDEQYSDLPdnvgefnpaALLPDYGILNASVGLSFKDDAfRVSLIAKNLTDESYaTTYsgD 789
Cdd:TIGR01786 622 TLTFSGAKDAVDAYATYYENGEAAKAGP---------LRTPSYTVVDLYGYYKPNKNL-TLRFGVYNLLDRKY-TTW--E 688
|
810 820
....*....|....*....|....*..
gi 1821990313 790 NFRYQIPRD-----AERYFGVSFKARF 811
Cdd:TIGR01786 689 SARQAGPLAtgytaPGRNYKASVEYKF 715
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
44-673 |
1.07e-17 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 87.52 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 44 KNDTFEKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNsaLTVRGIGT----ISFS 119
Cdd:PRK13483 29 PDKTMETVVVTASGYEQQIRDAPASISVITREDLENRFYRDLTDALLDVPGVVVTGGGDRTD--ISLRGMGSqytlILVD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 120 IAAEPSVATVVDGVVLGRSGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSV--ETSFYQD---- 193
Cdd:PRK13483 107 GKRQSSRETRPNSDGPGVEQAWTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWQGEVrlDTTLQENsdsg 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 194 NEYRFKGVISGGLTDDLaASLTVFkGKFDGYI-DNVYNNekVNGYDREGARAVFKYEPEDDLSVKFIAEFYNADDDCCA- 271
Cdd:PRK13483 187 NVYQANFFVNGPLIKDL-LGLQLY-GQYTQREeDDIEGG--YRDKDARSLTAKLALTPNEDHDIMLEVGTSNQERDSTVg 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 272 -DLEALPSGRNPDSKAAPNSNgivdgvadidldqrkvDHDYESRTIdehsafsvqvdktigdytytSITAQRSWDnteyr 350
Cdd:PRK13483 263 kTVAPLAPGESCGRRGCPESS----------------TTEYERSTV--------------------SLSHTGRWD----- 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 351 egdftsiagdssepvFGapfqlhdigaqqwdqfsqelrvTSNLagpfnyvaglfYWNMDSQRNFTRDASCQNNGGQLDSA 430
Cdd:PRK13483 302 ---------------FG----------------------TSDT-----------YIQHEEFDNKSREMKIKNTDFQSSLV 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 431 MAFYAQNNLS-GAE-LDAALNDLDGytqglgvscnaNDIVSATafmSTEFNNWAAFADGTYDLSEDLRVLFGIRYTDDEV 508
Cdd:PRK13483 334 APLGQEHTLTfGAAyNHQDLTDETS-----------NQISDLT---DISRTQWAVFSEDEWRIADDFALTGGLRLDHDEN 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 509 SYTHrrVSNDVYGrtgvgvrpatlntddegkaeetnvsgrlgmQYDLGDGQMVYGTYSQGYKGP--------------GF 574
Cdd:PRK13483 400 FGGH--VSPRVYG------------------------------VWNLAPSWTVKGGVSTGFRAPslrqttpdwgqvsrGG 447
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 575 NIYYnfNPDndsreISPEESDAYEIGYKY-ASREFVFNMALFRTEIEGfQANNFDCSDGTCI----------TRLTNAGD 643
Cdd:PRK13483 448 NIYG--NPD-----LKPETSLNKELGLYYdLGSGLTASLTVFYNEFKD-KITRVACPATQCTdgpnqfgadpTTYVNIDE 519
|
650 660 670
....*....|....*....|....*....|
gi 1821990313 644 VSTQGVEVDFMWAATESLTLTGGVAYIKAE 673
Cdd:PRK13483 520 AVTQGVEASLSYPITSTLSLSGNYTYTDSE 549
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
61-170 |
3.94e-17 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 77.69 E-value: 3.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 61 SLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSALTVRGIGTisfsiaaePSVATVVDGVVLGRSGQ 140
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGGGGGSSISIRGFGS--------NRVLVLVDGVPLNSGGG 72
|
90 100 110
....*....|....*....|....*....|....*
gi 1821990313 141 AFADLY-----DVDRIEVLRGPQGTLFGKNASAGV 170
Cdd:pfam07715 73 GSVDLNsidpeDIERVEVLKGPASALYGSGAIGGV 107
|
|
| TonB-B12 |
TIGR01779 |
TonB-dependent vitamin B12 receptor; This model represents the TonB-dependent outer membrane ... |
49-243 |
2.06e-12 |
|
TonB-dependent vitamin B12 receptor; This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins]
Pssm-ID: 273802 [Multi-domain] Cd Length: 614 Bit Score: 70.66 E-value: 2.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 49 EKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSF-RKGTTTRNSALTVRGIGTisfsiaaePSVA 127
Cdd:TIGR01779 29 DTVVVTANRFAQTASQTLAPVTIITRQDIERTQAKSLPELLRRLPGVSIaQNGGRGQNTSLFLRGTES--------DHVL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 128 TVVDGVVLGRSGQAFADLYD-----VDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVI 202
Cdd:TIGR01779 101 VLIDGIRFGSAAAGAADFQQlpvelVERIEYVRGPRSSLYGSEAIGGVINIITRRRSGGQGTTLSAGLGSLDYQEYSIAS 180
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1821990313 203 SGGLTDDLAASLTVFKGKFDGYidNVY-NNEKVNGYDREGAR 243
Cdd:TIGR01779 181 GVAIGENGWYSVALGTESTKGI--NVRpGGPGVYDPDRDGFR 220
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
9-710 |
1.29e-11 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 68.29 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 9 SLAVTLAMTTGLALSTQVHAQQEQAEQEQQKVEEAKNDTFEKI-VVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNM-E 86
Cdd:PRK09840 14 SLAFFAGLCIGITPVAQALAAEGQTNADDTLVVEASTPSLYAPdQSADPKFSQPLADTTQTITVISEQVIKDQGATNLtE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 87 GLQSlVPSVSF----RKGTTTRNSALTVRGIGTiSFSIaaepsvatVVDGVvlgRS-GQAFADLYDVDRIEVLRGPQGTL 161
Cdd:PRK09840 94 ALRN-VPGVGTffagENGNTTTGDAIYMRGFDT-SNSI--------YVDGI---RDiGSISRDTFNTEQVEVIKGPSGTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 162 FGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDDLAASLTVFKGKF-DGYIDNVYNNekvngydRE 240
Cdd:PRK09840 161 YGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKThDAGRDKVKNE-------RY 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 241 G--ARAVFKYEPEDDLSVKFIAEFYNADDDCCADLEALPSGRNPDSK-AAPNSNGIVDGV----ADIDLDQR-------K 306
Cdd:PRK09840 234 GvaPSVAFGLGTANRLYLNYLHVTQNNTPDGGIPTIGLPGYSAPSAGrAALNHAGKVDTHnfygTDSDYDDSttdtatmR 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 307 VDHDYESRTidehsafsvqvdkTIGDYTYTSITAQrSWDNTEYREGDFTSIAGDSSEPVFGAPFQLHDIGAQQWDQFSQE 386
Cdd:PRK09840 314 FEHDINDNT-------------TLRNTTRWSRVKQ-DYLLTAIMGGASNITTPTPSDVNTWTWSRTANTKDVSNKILTNQ 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 387 LRVTSNLA-GPF--NYVAGLfywnmdsqrNFTRDAscQNNGGqldsamafYAQNNLSGAELDAAlndlDGYTQGLGVSCN 463
Cdd:PRK09840 380 TNLTSTFYtGSIghDVSTGV---------EFTRET--QTNYG--------VNPVTLPAVNLYHP----DSSIHPGGLTRN 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 464 ANDIVSATafmstefNNWAAFADGTYDLSEDLRVLFGIRYTDDEVSYTHRRVSNDVyGRTGV----GVRPATLNTDDEGK 539
Cdd:PRK09840 437 GANANGQT-------DTFAIYAFDTLQLTRDWELNGGIRLDNYHTEYDSATACGGS-GRGAItcpaGVAKGSPVTTVDTA 508
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 540 AEETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPG---FNIYYNFNPDNDSR-EISPEESDAYEIGYKYASRE--FVFNMA 613
Cdd:PRK09840 509 KSGNLVNWKAGALYKLTENGNVYINYAVSQQPPGgsnFALAQSGSGNSANRtDFKPQKANTSEIGTKWQVLDkrLLLTAA 588
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 614 LFRTEIEGFQANNfdcSDGTcitrLTNAGDVSTQGVEVDFMWAATESLTLTGGVAYIKAEIDefNCPAEVAAGSctdrSG 693
Cdd:PRK09840 589 LFRTDIENEVEQN---DDGT----YSQYGKKRVEGYELSVAGNITPAWQVIAGYTQQKATVK--NGKDVAQDGS----SS 655
|
730
....*....|....*..
gi 1821990313 694 LdvPFSPDLKYSLTADY 710
Cdd:PRK09840 656 L--PYTPEHAFTLWSQY 670
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
1-210 |
1.41e-11 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 68.13 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 1 MRAKKSVLSLAVTLAMTtGLALSTQvhaqqeqaeQEQQKVEEAKNDTFEKIVVTSQKRT-QSLnevpvAVSVLNSDQINS 79
Cdd:PRK13524 1 MNKKIHSLALLVNLGIY-GVAQAAE---------AEDAKTDDTPASHEDTIVVTAAEQNlQAP-----GVSTITAEDIRK 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 80 A-FANNMEGLQSLVPSVSFRKGTTT----RNSALTVRGIGTISFSIAAEPSVATVVDGVVLGRSGQ---------AFADL 145
Cdd:PRK13524 66 RpPANDVSEIIRTMPGVNLTGNSTSgqrgNNRQIDIRGMGPENTLILIDGKPVSSRNSVRYGWRGErdtrgdtnwVPPEM 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821990313 146 ydVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETsFYQDNEYRFKGV-------ISGGLTDDL 210
Cdd:PRK13524 146 --IERIEVLRGPAAARYGNGAAGGVVNIITKKPTGEWHGSWNT-YFNAPEHKAEGAtkrtnfsLSGPLGDEL 214
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
49-673 |
8.47e-11 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 65.56 E-value: 8.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 49 EKIVVTSQKRTQSLNEVPVAVSVLNSDQI-NSAFANNMEGLQSlVPSVSFRKGTTTrnSALTVRGIGTISFSIaaepsva 127
Cdd:PRK13513 36 DTMVVTASGFQQRIQDAPASISVVTREQLeNKAYRDVTDALKD-VPGVVVTGGGST--SDISIRGMAAKYTLI------- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 128 tVVDGV-VLGRSGQAFAD-----------LYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSV--ETSFYQD 193
Cdd:PRK13513 106 -LVDGKrVDTRSTRPNSDgsgieqgwlppLAAIERIEVVRGPMSSLYGSDAMGGVINIITRKVQKEWHGSLraDATLQED 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 194 ----NEYRFKGVISGGLTDDLAASltvfkgKFDGYIDNVYNNEKVNGYDREGAR---AVFKYEPEDDLSVKFIAEFYNAD 266
Cdd:PRK13513 185 sksgDIFQTNAYASGPLIDGLLGL------KVSGLLSHRSEDKIIDGYNEQRMRngtATFSLTPDDNNEFDFEIGRYVQD 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 267 DDccadlealpsgRNP-DSKAAPNSNGivdgvadidldqrkvDHDYesrtidEHSAFSVQVDktiGDYTYTSITA--QRS 343
Cdd:PRK13513 259 RN-----------STPgRTLALNGTNS---------------DTQY------DRNNYAITHN---GYYDFGNSTSyiQRD 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 344 WDNTEYREgdftsiagdssepvfgapfqlhdigaqqwdqfsqelrvtsnlagpFNYVAGLFywnmDSQRNFTRDASCQNN 423
Cdd:PRK13513 304 ETRNPSRQ---------------------------------------------MKSVDTIF----NTQTSFLLDDHTLSL 334
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 424 GGQldsamafYAQNNLS--GAELDAA--LNDLDGYtqglgvscnandivsatafmstefnNWAAFADGTYDLSEDLRVLF 499
Cdd:PRK13513 335 GGQ-------YRYEELYdkGNQLPSAsdLNKLTRW-------------------------SWALFAEDEWQMTNDFALTG 382
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 500 GIRYTDDEVSYTHrrVSNDVYGRTGVgvrpatlntddegkAEETNVSGRLGMQYDLGDGQMVYGTYSQGYKGPGFNIYYN 579
Cdd:PRK13513 383 GIRMDQDQNYGTH--WTPRLYGVWHL--------------ADQWTLKGGVSTGYRSPDLRQATDNWGQLTGGGGLPALIL 446
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 580 FNPDndsreISPEESDAYEIGYKYASRE-FVFNMALFRTEIEGFQANNFDC----SDGTC---------ITRLTNAGDVS 645
Cdd:PRK13513 447 GNSD-----LKPEKSISQEIGILWDNQEnLNASVTLFNTDFKDKITEVRNCdttnTDGQCvfnginydfISDRINVDKAN 521
|
650 660
....*....|....*....|....*...
gi 1821990313 646 TQGVEVDFMWAATESLTLTGGVAYIKAE 673
Cdd:PRK13513 522 MRGVEATFNWDINQAWSLATNYTFTQSE 549
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
46-268 |
4.76e-09 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 59.90 E-value: 4.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 46 DTFEKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNSaLTVRGIGTiSFSIaaeps 125
Cdd:PRK10064 28 DDGETMVVTASAVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKG-VSIRGLDS-SYTL----- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 126 vaTVVDGV-VLGRSGQAFADLYD--------VDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSV--ETSFYQDN 194
Cdd:PRK10064 101 --ILIDGKrVNSRNAVFRHNDFDlnwipvdaIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWHGTVtvDTTIQEHR 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 195 E----YRFKGVISGGLTDD---LAASLTVFKGKFDGYI--DNVYNNE--KVNGYDREGARAVFKYEPEDDLSVKFIAEFY 263
Cdd:PRK10064 179 DrgdtYNGQFFTSGPLIDGvlgMKAYGSLAKREKDDPQnsTTTDTGEtpRIEGFTSRDGNVEFAWTPNQNHDFTAGYGFD 258
|
....*
gi 1821990313 264 NADDD 268
Cdd:PRK10064 259 RQDRD 263
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
147-262 |
2.06e-08 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 57.84 E-value: 2.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 147 DVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVET------SFYQDNEYRFKGVISGGLTDDlAASLTVF--- 217
Cdd:PRK13528 143 MVERIEVIRGPAAARYGSGAAGGVVNIITKRPTNDWHGSLSLytnqpeSSKEGATRRANFSLSGPLAGD-ALTMRLYgnl 221
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1821990313 218 -KGKFDGY-IDNVYNNEKVNGydREGAR-----AVFKYEPEDDLSVKFIAEF 262
Cdd:PRK13528 222 nKTDADSWdINSSAGTKNAAG--REGVRnkdinGVLSWKMTPQQILDFEAGY 271
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
51-209 |
6.95e-08 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 56.18 E-value: 6.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 51 IVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNM-EGLQSlVPSVSFRKGTTTrnsaltvrgIGTISFSIAAEPSVATV 129
Cdd:PRK13486 28 MIVSASGYEKKLTNAAASVSVISQEELQSSQYHDLaEALRS-VEGVDVESGTGK---------TGGLEISIRGMPASYTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 130 V--DGVVLGRSGQAFAD------------LYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQD-- 193
Cdd:PRK13486 98 IliDGVRQGGSSDVTPNgfsamntgfmppLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSVNAGLNLQes 177
|
170 180
....*....|....*....|
gi 1821990313 194 ----NEYRFKGVISGGLTDD 209
Cdd:PRK13486 178 nkwgNSSQFNFWSSGPLVDD 197
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
44-176 |
2.06e-07 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 54.63 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 44 KNDTFEKIVVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSFRKGTTTRNsaLTVRGI---------- 113
Cdd:PRK13484 26 SDKKEDTLVVTASGFTQQLRNAPASVSVITSEQLQKKPVSDLVDAVKDVEGISITGGNEKPD--ISIRGLsgdytlilvd 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821990313 114 GTISFSIAAEPSVATvvdgvvlGRSGQAFADLYDVDRIEVLRGPQGTLFGKNASAGVVNITTK 176
Cdd:PRK13484 104 GRRQSGRESRPNGSG-------GFEAGFIPPVEAIERIEVIRGPMSSLYGSDAIGGVINIITK 159
|
|
| OMP_RagA_SusC |
TIGR04056 |
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
49-176 |
6.38e-07 |
|
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 53.36 E-value: 6.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 49 EKIVVTSQKRTQSLNEVPV-------------AVSVLNSDQINSAFANNM-EGLQSLVPSVSFRKGTTT--RNSALTVRG 112
Cdd:TIGR04056 65 KNLNITLKEDTQELDEVVVvgygtqkkksltgAVSTVKAKELKKVPVSNLsNALQGKVAGVIITQSSGEpgGDAEIWIRG 144
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821990313 113 IGTISFSiaAEPSVatVVDGVVlGRSGQAFADLYDVDRIEVLRGPQGT-LFGKNASAGVVNITTK 176
Cdd:TIGR04056 145 ISSFGGN--NSPLY--VIDGVP-RDNGLSDLNPEDIESISVLKDASATaIYGSRGANGVILITTK 204
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
54-264 |
4.42e-06 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 50.53 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 54 TSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSF-RKGTTTRNSALTVRGIGtisfsiAAEPSVATVVDG 132
Cdd:PRK10044 68 TGTKTDTPIEKTPQSISVVTAEEMALHQPKSVKEALSYTPGVSVgTRGASNTYDHLIIRGFA------ASGQSQNNYLDG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 133 VVL-GRSGQAFA-DLYDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDDl 210
Cdd:PRK10044 142 LKLqGNFYNDAViDPYMLERAELMRGPVSVLYGKSNPGGLLNMVSKRPTTEPLKEVQFKMGTDNLFQTGFDFSDALDDD- 220
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1821990313 211 aaslTVFKGKFDGYIDNVYNNEKVNGYDREGARAVFKYEPEDDLSVKFIAEFYN 264
Cdd:PRK10044 221 ----GVYSYRLTGLARSANAQQKGSEEQRYAIAPSFTWRPDDKTNFTFLSYFQN 270
|
|
| btuB |
PRK10641 |
TonB-dependent vitamin B12 receptor BtuB; |
52-176 |
5.64e-05 |
|
TonB-dependent vitamin B12 receptor BtuB;
Pssm-ID: 236730 [Multi-domain] Cd Length: 614 Bit Score: 46.52 E-value: 5.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 52 VVTSQKRTQSLNEVPVAVSVLNSDQINSAFANNMEGLQSLVPSVSF-RKGTTTRNSALTVRGigtisfsiaAEPS-VATV 129
Cdd:PRK10641 29 VVTANRFQQPVSTVLAPTTVVTRDDIDRWQSKSVNDVLRRLPGVDIaQNGGLGQLSSLFIRG---------TNSShVLVL 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1821990313 130 VDGVVLGRSG-QAFADLYD-----VDRIEVLRGPQGTLFGKNASAGVVNITTK 176
Cdd:PRK10641 100 IDGVRLNQAGiSGSADLSQipislVQRIEYIRGPRSAVYGSDAIGGVVNIITT 152
|
|
| OMP_b-brl_3 |
pfam14905 |
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ... |
574-807 |
6.70e-04 |
|
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.
Pssm-ID: 434300 [Multi-domain] Cd Length: 407 Bit Score: 43.03 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 574 FNIYYNfNPDndsreISPEESDAYEIGYKYASReFVFNMALFRTEIEGFQANNFDCSDGTCITRLTNAGDVSTQGVEVDF 653
Cdd:pfam14905 203 YNYSQG-NPN-----LKPEYTNSFELGYTYKWK-LSLSLSYRYTNDVIQQTFITDDNDNVTYTTYENLGKSNSYGLELSA 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 654 MWAATE--SLTLTGGVAYIKAEIDEFNcPAEVAAGSCTDRSGLDVPFSPDLKYSLTADYfietdhgfNVHINSSYIYTDE 731
Cdd:pfam14905 276 SFNPTKwwSLNGNLNGYYNKYKIDGSL-NSDFSNFGFNWNLNNTFTLPKGWSLQLNGNY--------RSPRVTGQGKIKP 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821990313 732 QYSdlpdnvgefnpaallpdygiLNASVGLSFKDDAFRVSLIAKNL--TDESYATTYSGDNFR--YQIPRDAeRYFGVSF 807
Cdd:pfam14905 347 FYS--------------------LDLGLSKSFLKKKLTLSLNVNDIfnTRKFRSTTNYDNGFIqsYNNKWDS-RSVRLSL 405
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
146-209 |
7.10e-03 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 39.88 E-value: 7.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821990313 146 YDVDRIEVLRGPQGTLFGKNASAGVVNITTKDPSYDTTGSVETSFYQDNEYRFKGVISGGLTDD 209
Cdd:PRK14049 155 YGLEGVSILRGPSSALYGASGAGGLFNLITKRPTEEPLREVQVQYGTNNRYQGQFDFSGPVNET 218
|
|
| |
