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Conserved domains on  [gi|1827346512|ref|WP_167317012|]
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transposase [Ligilactobacillus ruminis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS66 super family cl24150
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
 2-48 2.54e-12

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


The actual alignment was detected with superfamily member pfam03050:

Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 58.80  E-value: 2.54e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1827346512   2 GQEMNILNIFEKGYFELSNNSAERAVKESVMGRKNWLFSSTFEGARA 48
Cdd:pfam03050 235 NRWEALLRFLEDGRVPIDNNQAERAIRPVVLGRKNWLFAGSDEGAEA 281
 
Name Accession Description Interval E-value
DDE_Tnp_IS66 pfam03050
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
 2-48 2.54e-12

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 58.80  E-value: 2.54e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1827346512   2 GQEMNILNIFEKGYFELSNNSAERAVKESVMGRKNWLFSSTFEGARA 48
Cdd:pfam03050 235 NRWEALLRFLEDGRVPIDNNQAERAIRPVVLGRKNWLFAGSDEGAEA 281
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
 14-51 1.36e-10

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 54.13  E-value: 1.36e-10
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1827346512  14 GYFELSNNSAERAVKESVMGRKNWLFSSTFEGARANAA 51
Cdd:NF033517  325 GRVPIDNNAAERAIRPVVLGRKNSLFAGSDRGAEAAAR 362
 
Name Accession Description Interval E-value
DDE_Tnp_IS66 pfam03050
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
 2-48 2.54e-12

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 58.80  E-value: 2.54e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1827346512   2 GQEMNILNIFEKGYFELSNNSAERAVKESVMGRKNWLFSSTFEGARA 48
Cdd:pfam03050 235 NRWEALLRFLEDGRVPIDNNQAERAIRPVVLGRKNWLFAGSDEGAEA 281
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
 14-51 1.36e-10

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 54.13  E-value: 1.36e-10
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1827346512  14 GYFELSNNSAERAVKESVMGRKNWLFSSTFEGARANAA 51
Cdd:NF033517  325 GRVPIDNNAAERAIRPVVLGRKNSLFAGSDRGAEAAAR 362
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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