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Conserved domains on  [gi|1836971798|ref|WP_169326159|]
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terminase endonuclease subunit [Pasteurella multocida]

Protein Classification

terminase endonuclease subunit( domain architecture ID 10010049)

terminase endonuclease subunit (GpM) directs cos cleavage; the Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
M PHA02537
terminase endonuclease subunit; Provisional
 2-239 3.50e-112

terminase endonuclease subunit; Provisional


:

Pssm-ID: 222861  Cd Length: 230  Bit Score: 323.19  E-value: 3.50e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798   2 GVREFQEQIRALQQIEQAKNdgtLQSEVVAQHSNDYTVLEIALTNDVNAIRAIPTLELRAEHKRNrFLPKWLPFVDEYLE 81
Cdd:PHA02537    1 MTSPAQRHFLRVSAAQAAAA---TQPAAVARHATAYELMLAQLAADRRALKGIQSIERKAELKRD-LLPKYLPWVEGVLA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798  82 KKAVYQNDYFAYCIIYLFDVGDFDKALELAEIAIEQKQSLPARFNSTLPNFVADQIFNWANKTASAGGSVEPYFTQTFEN 161
Cdd:PHA02537   77 AGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLD 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1836971798 162 VATKWQLHEIVKSKWLKMAAALLLRNDNGEVkasgIDDPESLILAIKLCIRAFQLNHKSGVKSMIERCYMRLSALEKE 239
Cdd:PHA02537  157 LTTEWDMPDEVRAKLYKAAGYLLLRNEKGEP----IGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKALAES 230
 
Name Accession Description Interval E-value
M PHA02537
terminase endonuclease subunit; Provisional
 2-239 3.50e-112

terminase endonuclease subunit; Provisional


Pssm-ID: 222861  Cd Length: 230  Bit Score: 323.19  E-value: 3.50e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798   2 GVREFQEQIRALQQIEQAKNdgtLQSEVVAQHSNDYTVLEIALTNDVNAIRAIPTLELRAEHKRNrFLPKWLPFVDEYLE 81
Cdd:PHA02537    1 MTSPAQRHFLRVSAAQAAAA---TQPAAVARHATAYELMLAQLAADRRALKGIQSIERKAELKRD-LLPKYLPWVEGVLA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798  82 KKAVYQNDYFAYCIIYLFDVGDFDKALELAEIAIEQKQSLPARFNSTLPNFVADQIFNWANKTASAGGSVEPYFTQTFEN 161
Cdd:PHA02537   77 AGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLD 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1836971798 162 VATKWQLHEIVKSKWLKMAAALLLRNDNGEVkasgIDDPESLILAIKLCIRAFQLNHKSGVKSMIERCYMRLSALEKE 239
Cdd:PHA02537  157 LTTEWDMPDEVRAKLYKAAGYLLLRNEKGEP----IGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKALAES 230
Phage_term_smal pfam05944
Phage small terminase subunit; This family consists of several phage small terminase subunit ...
 42-170 1.69e-49

Phage small terminase subunit; This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences.


Pssm-ID: 428684  Cd Length: 129  Bit Score: 160.08  E-value: 1.69e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798  42 IALTNDVNAIRAIPTLELRAEHKRnRFLPKWLPFVDEYLEKKAVYQNDYFAYCIIYLFDVGDFDKALELAEIAIEQKQSL 121
Cdd:pfam05944   2 AALAEDRRRLKAIQSIEDKAELKR-ELLPKYLPWVEGVLAAGSGAQDEVLMTCMVWLIDAGDYEQALDIADYAIAHGLPM 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1836971798 122 PARFNSTLPNFVADQIFNWANKTASAGGSVE-PYFTQTfENVATKWQLHE 170
Cdd:pfam05944  81 PDRFKRTTPTVVAEEIADAALKAFAAGQPVEaPYLSRV-ANLTTEWDMPD 129
 
Name Accession Description Interval E-value
M PHA02537
terminase endonuclease subunit; Provisional
 2-239 3.50e-112

terminase endonuclease subunit; Provisional


Pssm-ID: 222861  Cd Length: 230  Bit Score: 323.19  E-value: 3.50e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798   2 GVREFQEQIRALQQIEQAKNdgtLQSEVVAQHSNDYTVLEIALTNDVNAIRAIPTLELRAEHKRNrFLPKWLPFVDEYLE 81
Cdd:PHA02537    1 MTSPAQRHFLRVSAAQAAAA---TQPAAVARHATAYELMLAQLAADRRALKGIQSIERKAELKRD-LLPKYLPWVEGVLA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798  82 KKAVYQNDYFAYCIIYLFDVGDFDKALELAEIAIEQKQSLPARFNSTLPNFVADQIFNWANKTASAGGSVEPYFTQTFEN 161
Cdd:PHA02537   77 AGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLD 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1836971798 162 VATKWQLHEIVKSKWLKMAAALLLRNDNGEVkasgIDDPESLILAIKLCIRAFQLNHKSGVKSMIERCYMRLSALEKE 239
Cdd:PHA02537  157 LTTEWDMPDEVRAKLYKAAGYLLLRNEKGEP----IGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKALAES 230
Phage_term_smal pfam05944
Phage small terminase subunit; This family consists of several phage small terminase subunit ...
 42-170 1.69e-49

Phage small terminase subunit; This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences.


Pssm-ID: 428684  Cd Length: 129  Bit Score: 160.08  E-value: 1.69e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1836971798  42 IALTNDVNAIRAIPTLELRAEHKRnRFLPKWLPFVDEYLEKKAVYQNDYFAYCIIYLFDVGDFDKALELAEIAIEQKQSL 121
Cdd:pfam05944   2 AALAEDRRRLKAIQSIEDKAELKR-ELLPKYLPWVEGVLAAGSGAQDEVLMTCMVWLIDAGDYEQALDIADYAIAHGLPM 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1836971798 122 PARFNSTLPNFVADQIFNWANKTASAGGSVE-PYFTQTfENVATKWQLHE 170
Cdd:pfam05944  81 PDRFKRTTPTVVAEEIADAALKAFAAGQPVEaPYLSRV-ANLTTEWDMPD 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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