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Conserved domains on  [gi|1838524806|ref|WP_169548607|]
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MULTISPECIES: PepSY domain-containing protein [Shewanella]

Protein Classification

PepSY domain-containing protein( domain architecture ID 11461384)

PepSY (peptidase propeptide and YPEB) domain-containing protein may act as a regulator of peptidase activity and may also function in protecting the cell from lysis; similar to Bacillus subtilis uncharacterized protein YkoJ and YkoI

CATH:  3.10.450.40
PubMed:  15124630

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YkoI COG3212
PepSY domain containing protein, regulator of zincin peptidase activity [Posttranslational ...
 40-97 1.14e-09

PepSY domain containing protein, regulator of zincin peptidase activity [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 442445  Cd Length: 66  Bit Score: 50.21  E-value: 1.14e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1838524806  40 GQILSLNGTLAVVNQFCHGELIDAHLYQEDHKWRYDLQIKVQRGQIVNLSIDATNGQL 97
Cdd:COG3212     2 GAIISLEQALEIALARVPGRVLEVELERDDGRLVYEVEILTPDGRVYEVEVDAKTGEV 59
 
Name Accession Description Interval E-value
YkoI COG3212
PepSY domain containing protein, regulator of zincin peptidase activity [Posttranslational ...
 40-97 1.14e-09

PepSY domain containing protein, regulator of zincin peptidase activity [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442445  Cd Length: 66  Bit Score: 50.21  E-value: 1.14e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1838524806  40 GQILSLNGTLAVVNQFCHGELIDAHLYQEDHKWRYDLQIKVQRGQIVNLSIDATNGQL 97
Cdd:COG3212     2 GAIISLEQALEIALARVPGRVLEVELERDDGRLVYEVEILTPDGRVYEVEVDAKTGEV 59
 
Name Accession Description Interval E-value
YkoI COG3212
PepSY domain containing protein, regulator of zincin peptidase activity [Posttranslational ...
 40-97 1.14e-09

PepSY domain containing protein, regulator of zincin peptidase activity [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442445  Cd Length: 66  Bit Score: 50.21  E-value: 1.14e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1838524806  40 GQILSLNGTLAVVNQFCHGELIDAHLYQEDHKWRYDLQIKVQRGQIVNLSIDATNGQL 97
Cdd:COG3212     2 GAIISLEQALEIALARVPGRVLEVELERDDGRLVYEVEILTPDGRVYEVEVDAKTGEV 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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