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Conserved domains on  [gi|1841379275|ref|WP_170865121|]
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OmpA family protein [Roseovarius marisflavi]

Protein Classification

OmpA family protein( domain architecture ID 11458388)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395|22986056
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 142-244 1.45e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.27  E-value: 1.45e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 142 MNFETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVG 221
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|...
gi 1841379275 222 ESEPSHPNSTEEGRYANRRIVIT 244
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 23-244 3.70e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.12  E-value: 3.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275  23 VVITFADGTTKSVNFDEVLELPGAEPALTVPAPVVAGPVAPSVSVTTGDTGVVANISIAPVIGQDGSTTVIGQDAGSPVS 102
Cdd:COG2885    70 LELLDAGSLSATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAA 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 103 GDAPETRVTVGITEPAPPKPPAPAPAPPTPKITEMSFPGMNFETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDN 182
Cdd:COG2885   150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDS 229

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1841379275 183 VGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:COG2885   230 RGSDAYNLALSERRAEAVKDYLVSK-GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 142-244 1.45e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.27  E-value: 1.45e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 142 MNFETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVG 221
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|...
gi 1841379275 222 ESEPSHPNSTEEGRYANRRIVIT 244
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 23-244 3.70e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.12  E-value: 3.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275  23 VVITFADGTTKSVNFDEVLELPGAEPALTVPAPVVAGPVAPSVSVTTGDTGVVANISIAPVIGQDGSTTVIGQDAGSPVS 102
Cdd:COG2885    70 LELLDAGSLSATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAA 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 103 GDAPETRVTVGITEPAPPKPPAPAPAPPTPKITEMSFPGMNFETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDN 182
Cdd:COG2885   150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDS 229

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1841379275 183 VGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:COG2885   230 RGSDAYNLALSERRAEAVKDYLVSK-GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 144-238 4.10e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 73.93  E-value: 4.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIM-FKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGE 222
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkFPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNF-GVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 1841379275 223 SEPSHPNSTEEGRYAN 238
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
144-246 7.91e-17

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 75.65  E-value: 7.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIMFKYqDLRIMVTGHTDNV----GSEEENLILSQNRAKSFSNALSnRYGIDPQRITWHG 219
Cdd:COG1360    63 FDSGSAELTPEGRELLDKIAAVLAEV-PNRIRVEGHTDNVpistARFPSNWELSAARAAAVVRYLI-EGGVPPERLSAVG 140

                          90       100
                  ....*....|....*....|....*..
gi 1841379275 220 VGESEPSHPNSTEEGRYANRRIVITPL 246
Cdd:COG1360   141 YGDTRPLAPNDTPEGRARNRRVEIVIL 167
PRK10510 PRK10510
OmpA family lipoprotein;
144-244 1.33e-15

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 73.37  E-value: 1.33e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGES 223
Cdd:PRK10510  116 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-GVDASRIRTQGMGPA 194

                          90       100
                  ....*....|....*....|.
gi 1841379275 224 EPSHPNSTEEGRYANRRIVIT 244
Cdd:PRK10510  195 NPIASNSTAEGKAQNRRVEIT 215
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 173-244 8.67e-14

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 66.17  E-value: 8.67e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1841379275 173 RIMVTGHTDNVGSEE----ENLILSQNRAKSFSNALSnRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:TIGR03350  62 RITVVGHTDNVPIRTarfpSNWHLSEARAKAVADVLA-QAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEID 136
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 142-244 1.45e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.27  E-value: 1.45e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 142 MNFETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVG 221
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-GVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|...
gi 1841379275 222 ESEPSHPNSTEEGRYANRRIVIT 244
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 23-244 3.70e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.12  E-value: 3.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275  23 VVITFADGTTKSVNFDEVLELPGAEPALTVPAPVVAGPVAPSVSVTTGDTGVVANISIAPVIGQDGSTTVIGQDAGSPVS 102
Cdd:COG2885    70 LELLDAGSLSATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAA 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 103 GDAPETRVTVGITEPAPPKPPAPAPAPPTPKITEMSFPGMNFETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDN 182
Cdd:COG2885   150 KALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDS 229

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1841379275 183 VGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:COG2885   230 RGSDAYNLALSERRAEAVKDYLVSK-GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 144-238 4.10e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 73.93  E-value: 4.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIM-FKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGE 222
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkFPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNF-GVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 1841379275 223 SEPSHPNSTEEGRYAN 238
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
144-246 7.91e-17

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 75.65  E-value: 7.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIMFKYqDLRIMVTGHTDNV----GSEEENLILSQNRAKSFSNALSnRYGIDPQRITWHG 219
Cdd:COG1360    63 FDSGSAELTPEGRELLDKIAAVLAEV-PNRIRVEGHTDNVpistARFPSNWELSAARAAAVVRYLI-EGGVPPERLSAVG 140

                          90       100
                  ....*....|....*....|....*..
gi 1841379275 220 VGESEPSHPNSTEEGRYANRRIVITPL 246
Cdd:COG1360   141 YGDTRPLAPNDTPEGRARNRRVEIVIL 167
PRK10510 PRK10510
OmpA family lipoprotein;
144-244 1.33e-15

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 73.37  E-value: 1.33e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGES 223
Cdd:PRK10510  116 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-GVDASRIRTQGMGPA 194

                          90       100
                  ....*....|....*....|.
gi 1841379275 224 EPSHPNSTEEGRYANRRIVIT 244
Cdd:PRK10510  195 NPIASNSTAEGKAQNRRVEIT 215
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 173-244 8.67e-14

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 66.17  E-value: 8.67e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1841379275 173 RIMVTGHTDNVGSEE----ENLILSQNRAKSFSNALSnRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:TIGR03350  62 RITVVGHTDNVPIRTarfpSNWHLSEARAKAVADVLA-QAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEID 136
PRK07033 PRK07033
DotU family type VI secretion system protein;
173-244 3.92e-12

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 65.07  E-value: 3.92e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1841379275 173 RIMVTGHTDNVGSEE----ENLILSQNRAKSFSNALSNRYGiDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:PRK07033  346 NVLVTGYSDNVPIRTarfpSNWELSQARAQAVRALLAARLG-QPERVTAEGRGDSDPVAPNDSAENRARNRRVEIT 420
motB PRK08944
flagellar motor protein MotB; Reviewed
 173-244 4.12e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 64.65  E-value: 4.12e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1841379275 173 RIMVTGHTDNVGSEEE----NLILSQNRAKSFSNALSNRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:PRK08944  211 IITVSGHTDNVPISSElyrsNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEII 286
motB PRK07734
flagellar motor protein MotB; Reviewed
 174-249 4.39e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 58.21  E-value: 4.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 174 IMVTGHTDNV---GSE-EENLILSQNRAKSFSNALSNRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRR--IVITPLD 247
Cdd:PRK07734  176 ITISGHTDNVpiaNAQfASNWELSVMRAVNFMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRveVLILPLT 255


                  ..
gi 1841379275 248 GA 249
Cdd:PRK07734  256 EK 257
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 162-243 1.88e-09

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 56.56  E-value: 1.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 162 VAQIMFKYqDLRIMVTGHTDNVGSEE----ENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEPSHPNSTEEGRYA 237
Cdd:PRK09038  155 VAEVLKPA-PNPIHVEGFTDNVPIATaqfpSNWELSAARAASVVRLLADD-GVAPSRLAAVGYGEFQPVADNDTAEGRAR 232


                  ....*.
gi 1841379275 238 NRRIVI 243
Cdd:PRK09038  233 NRRVVL 238
motB PRK08457
flagellar motor protein MotB; Reviewed
 137-244 3.04e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 55.88  E-value: 3.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 137 MSFP-GMNFETNKYTIT----FDGMKRVAYVAQIMFKYQDlrIMVTGHTDN---VGSE-EENLILSQNRAKSFSNALSnR 207
Cdd:PRK08457  118 LKLPsKLLFENGSAEIInadmMDYLKRIAKIITKLPKQVK--INVRGYTDNsplNKSRyKDHYELAAARAYNVMKVLI-Q 194

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1841379275 208 YGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:PRK08457  195 YGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEIF 231
PRK09039 PRK09039
peptidoglycan -binding protein;
144-241 8.65e-09

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 54.97  E-value: 8.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIMFKYQD---------LRimVTGHTDNV-----GSEEENLILSQNRAKSFSNALSNRyG 209
Cdd:PRK09039  228 FPTGSAELNPEGQAEIAKLAAALIELAKeippeinwvLR--VDGHTDNVplsgtGRFRDNWELSSARAISVVKFLIAL-G 304

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1841379275 210 IDPQRITWHGVGESEPSHPNSTEEGRYANRRI 241
Cdd:PRK09039  305 VPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
PRK09967 PRK09967
OmpA family protein;
144-245 8.92e-09

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 53.06  E-value: 8.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 144 FETNKYTITFDGMKRVAYVAQIMFKYQDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRYGIDPQRITWHGVGES 223
Cdd:PRK09967   56 FAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKK 135

                          90       100
                  ....*....|....*....|....
gi 1841379275 224 EPSHPNSTEEGRYANRR--IVITP 245
Cdd:PRK09967  136 YPIASNKTAQGRAENRRvaVVITT 159
PRK08126 PRK08126
hypothetical protein; Provisional
 173-244 2.71e-07

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 50.85  E-value: 2.71e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1841379275 173 RIMVTGHTDNV--GSEE--ENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVIT 244
Cdd:PRK08126  355 KVTVTGHTDNQpiRSAQfaSNLVLSEKRAAQVAQMLQSA-GVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEIT 429
PRK07034 PRK07034
hypothetical protein; Provisional
 174-243 5.63e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 47.09  E-value: 5.63e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1841379275 174 IMVTGHTDN----VGSEEENLILSQNRAKSFSNALSNRYGIDP---QRITWHGVGESEPSHPNSTEEGRYANRRIVI 243
Cdd:PRK07034  429 IEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKLRESTQINEthqREISAIGRGESDPLADNATEEGRKRNRRVDI 505
PRK06925 PRK06925
flagellar motor protein MotB;
174-247 3.11e-05

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 43.98  E-value: 3.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1841379275 174 IMVTGHTDNVGSEE----ENLILSQNRAKSFSNALSNRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVITPLD 247
Cdd:PRK06925  151 IKVEGHTDSRPISTyrypSNWELSAARASSVIRYFTSKEKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISD 228
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 174-243 4.22e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 43.51  E-value: 4.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1841379275 174 IMVTGHTDNVGSEEE----NLILSQNRAKSFSNALSNRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVI 243
Cdd:PRK06742  148 IVVEGHTDSRPIHNDkfpsNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVI 221
motB PRK06667
flagellar motor protein MotB; Validated
 173-249 4.51e-05

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 43.63  E-value: 4.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1841379275 173 RIMVTGHTDNVGSEEE-----NLILSQNRAKSFSNALSNRYGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVITPLD 247
Cdd:PRK06667  161 NFRIEGHTDNVDVNPEgpwksNWELSGARAVNMLEYILNYGDQSESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILT 240


                  ..
gi 1841379275 248 GA 249
Cdd:PRK06667  241 DA 242
PRK10808 PRK10808
outer membrane protein A; Reviewed
 170-225 6.69e-05

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 43.53  E-value: 6.69e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1841379275 170 QDLRIMVTGHTDNVGSEEENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEP 225
Cdd:PRK10808  256 KDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSK-GIPADKISARGMGKSNP 310
PRK09040 PRK09040
hypothetical protein; Provisional
 174-246 1.52e-04

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 41.54  E-value: 1.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1841379275 174 IMVTGHTDNVGSEE------ENLILSQNRAKSFSNALSNRyGIDPQRITWHGVGESEPSHPNSTEEGRYANRRIVITPL 246
Cdd:PRK09040  125 LMVSGFTDDQPVRAgnrrfaDNWELSAQRALTVTRALIDA-GVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIAPV 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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