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Conserved domains on  [gi|1844804426|ref|WP_171525035|]
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MULTISPECIES: protein translocase subunit SecF [Acinetobacter]

Protein Classification

protein translocase subunit SecF( domain architecture ID 11417410)

protein translocase subunit SecF is part of the Sec protein translocase complex; SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA

Gene Ontology:  GO:0015450|GO:0043952|GO:0065002
TCDB:  2.A.6.4

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 18-301 2.43e-113

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 329.71  E-value: 2.43e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  18 DERVIPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQTLGSDR 97
Cdd:COG0341     5 GNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSDN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  98 DLMVRMPVQEDvEAEDLTKAITAAVQLPNNTATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAV 177
Cdd:COG0341    85 DVLIRTPPLDG-ESAEEVEKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 178 LSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMT 257
Cdd:COG0341   164 VALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTSLT 243

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1844804426 258 LLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALW 301
Cdd:COG0341   244 TLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLW 287
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 18-301 2.43e-113

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 329.71  E-value: 2.43e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  18 DERVIPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQTLGSDR 97
Cdd:COG0341     5 GNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSDN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  98 DLMVRMPVQEDvEAEDLTKAITAAVQLPNNTATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAV 177
Cdd:COG0341    85 DVLIRTPPLDG-ESAEEVEKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 178 LSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMT 257
Cdd:COG0341   164 VALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTSLT 243

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1844804426 258 LLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALW 301
Cdd:COG0341   244 TLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLW 287
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 50-294 8.89e-76

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 232.55  E-value: 8.89e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  50 GLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQTLGSDRDLMVRMPVQEDVEAEDLTKAITAAVQLPNNTA 129
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELREALEEALKNVDPDA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 130 TVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAI 209
Cdd:TIGR00966  81 EIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 210 IGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTY 289
Cdd:TIGR00966 161 IGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTY 240


                  ....*
gi 1844804426 290 SSIYI 294
Cdd:TIGR00966 241 SSIFI 245
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-307 5.16e-73

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 239.36  E-value: 5.16e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  13 YGRPDDERvIPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQT 92
Cdd:PRK13024  441 EGVTIFDR-IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVT 519

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  93 LGSD-RDLMVRM-PVQEDVEAED--LTKAITAAVQlPNNTATVPKVDVVGGQVGNELyVRSA-GAVALALLLMLVYVTIR 167
Cdd:PRK13024  520 FGSDnNQVLVRTyGILSDDEEADteIVAKLKNALK-NDKGGTIPSSETVGPTVGKEL-ARNAiIAVLIALIGILLYILIR 597

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 168 FEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTET 247
Cdd:PRK13024  598 FEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQT 677

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 248 LRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALWRGLNRQ 307
Cdd:PRK13024  678 LSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRL 737
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 129-301 3.93e-55

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 177.80  E-value: 3.93e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 129 ATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLA 208
Cdd:pfam02355  13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLT 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 209 IIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGT 288
Cdd:pfam02355  93 IIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGT 172

                         170
                  ....*....|...
gi 1844804426 289 YSSIYIGTAFALW 301
Cdd:pfam02355 173 YSSIFIASPILLD 185
RND_permease_2 NF033617
multidrug efflux RND transporter permease subunit;
188-286 9.03e-03

multidrug efflux RND transporter permease subunit;


Pssm-ID: 411236 [Multi-domain]  Cd Length: 1009  Bit Score: 37.69  E-value: 9.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  188 LGIFAMMQWpFD-----LTVLAALLAIiGFSLNDNIVVSDRIrenFRKI-RGATPLEVVNIALTETLRRTIHTSMTLLLV 261
Cdd:NF033617   369 IGTFAVMYL-FGfsinlLTLMALVLAI-GLVVDDAIVVVENI---HRHIeEGESPLEAALKGAREIGFTVIAMTLTLVAV 443

                           90       100
                   ....*....|....*....|....*...
gi 1844804426  262 VVAMMLMG---GDGLKWFSIAMFVGVFV 286
Cdd:NF033617   444 YLPILFMGgltGRLFREFAVTLAGAVII 471
 
Name Accession Description Interval E-value
SecF COG0341
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ...
 18-301 2.43e-113

Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440110 [Multi-domain]  Cd Length: 291  Bit Score: 329.71  E-value: 2.43e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  18 DERVIPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQTLGSDR 97
Cdd:COG0341     5 GNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFGSDN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  98 DLMVRMPVQEDvEAEDLTKAITAAVQLPNNTATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAV 177
Cdd:COG0341    85 DVLIRTPPLDG-ESAEEVEKVRAALKEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAVGAV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 178 LSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMT 257
Cdd:COG0341   164 VALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRTINTSLT 243

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1844804426 258 LLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALW 301
Cdd:COG0341   244 TLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLW 287
3a0501s07 TIGR00966
protein-export membrane protein SecF; This bacterial protein is always found with the ...
 50-294 8.89e-76

protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273368 [Multi-domain]  Cd Length: 246  Bit Score: 232.55  E-value: 8.89e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  50 GLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQTLGSDRDLMVRMPVQEDVEAEDLTKAITAAVQLPNNTA 129
Cdd:TIGR00966   1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEELREALEEALKNVDPDA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 130 TVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAI 209
Cdd:TIGR00966  81 EIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 210 IGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTY 289
Cdd:TIGR00966 161 IGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTY 240


                  ....*
gi 1844804426 290 SSIYI 294
Cdd:TIGR00966 241 SSIFI 245
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 13-307 5.16e-73

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 239.36  E-value: 5.16e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  13 YGRPDDERvIPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKATDVSNALVKAGFNDPVVQT 92
Cdd:PRK13024  441 EGVTIFDR-IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVT 519

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  93 LGSD-RDLMVRM-PVQEDVEAED--LTKAITAAVQlPNNTATVPKVDVVGGQVGNELyVRSA-GAVALALLLMLVYVTIR 167
Cdd:PRK13024  520 FGSDnNQVLVRTyGILSDDEEADteIVAKLKNALK-NDKGGTIPSSETVGPTVGKEL-ARNAiIAVLIALIGILLYILIR 597

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 168 FEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTET 247
Cdd:PRK13024  598 FEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQT 677

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 248 LRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALWRGLNRQ 307
Cdd:PRK13024  678 LSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRL 737
secF PRK13021
preprotein translocase subunit SecF; Reviewed
 31-316 1.37e-60

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 237274 [Multi-domain]  Cd Length: 297  Bit Score: 195.46  E-value: 1.37e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  31 AALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKATDVSnALVKAGFNDPVVQTLGSDRDLMVRMPVQEDVE 110
Cdd:PRK13021   13 SSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQ-PLLNAAYQQEVSVISASEPGRWVLRYAPADTA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 111 AE--DLTKAITAAvqlpNNTATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIVVTL 188
Cdd:PRK13021   92 QSnvDIQQALAPL----GTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 189 GIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMTLLLVVVAMMLM 268
Cdd:PRK13021  168 AFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIM 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1844804426 269 GGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALWRGLNRQDFIVQVKPE 316
Cdd:PRK13021  248 GGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEHYKVQVISD 295
SecD_SecF pfam02355
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ...
 129-301 3.93e-55

Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.


Pssm-ID: 280510 [Multi-domain]  Cd Length: 189  Bit Score: 177.80  E-value: 3.93e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 129 ATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLA 208
Cdd:pfam02355  13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLT 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 209 IIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGT 288
Cdd:pfam02355  93 IIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGT 172

                         170
                  ....*....|...
gi 1844804426 289 YSSIYIGTAFALW 301
Cdd:pfam02355 173 YSSIFIASPILLD 185
PRK14726 PRK14726
protein translocase subunit SecDF;
18-294 2.62e-54

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 189.93  E-value: 2.62e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  18 DERVIPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSNPVKAT-DVSNALVKAGFNDPVVQTLGSD 96
Cdd:PRK14726  543 EGANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQGNADIaDIRARLNELNLGEVQVERFGSP 622

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  97 RDLMVRMPVQEDVEAEDLTkAITAAVQLPNNTATVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGA 176
Cdd:PRK14726  623 RDALIRIASQDGGENAEQS-AVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGA 701

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 177 VLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRgATPLEV-VNIALTETLRRTIHTS 255
Cdd:PRK14726  702 IIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYK-KMPLPIlIDASINQTLSRTVLTS 780

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1844804426 256 MTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYI 294
Cdd:PRK14726  781 ATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYI 819
2A0604s01 TIGR00916
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ...
 165-292 4.80e-38

protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273336 [Multi-domain]  Cd Length: 192  Bit Score: 133.92  E-value: 4.80e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 165 TIRFEFKLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIAL 244
Cdd:TIGR00916  65 LLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGI 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1844804426 245 TETLRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSI 292
Cdd:TIGR00916 145 NQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
PRK13023 PRK13023
protein translocase subunit SecDF;
22-304 5.43e-33

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 128.97  E-value: 5.43e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  22 IPFMKIALPAALLSILLTVASIFFIATKGLNLGLDFTGGIAAELNYSN-PVKATDVSNALVKAGFNDPVVQTLGSDRDLM 100
Cdd:PRK13023  453 IPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERLAELNIDSARVLPAKSPRSAL 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 101 VRMPVQEDVEAEDLTKAITAAVQLPNNTaTVPKVDVVGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSL 180
Cdd:PRK13023  533 VIIGSQEVGDDAEQTVAVKLRGEFEQDY-SFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLST 611

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 181 FHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATPLEVVNIALTETLRRTIHTSMTLLL 260
Cdd:PRK13023  612 LHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFL 691

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1844804426 261 VVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALWRGL 304
Cdd:PRK13023  692 AHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGL 735
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 53-294 7.30e-25

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 105.33  E-value: 7.30e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426   53 LGLDFTGGIAAELNYSNpVKATDVS---NALVK----AGFN--DPVVQTLGSD--------RDLMVRMPVQEDVEAEDLT 115
Cdd:PRK12911  1114 LGMDFKGGYALTLDPSD-VCEYDVEqmrSKLRKkfqqIGLSsrDFRIRTFDSSekikiyfsQNALDRVEAIEGAGSEQSD 1192

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  116 KAITAAVQLPNNTATVPKVDV----------VGGQVGNELYVRSAGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIV 185
Cdd:PRK12911  1193 HHLALVLGVLSDTGSDTSSEVfdatqnfwfkVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAICALIHDLL 1272

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  186 VTLGI-----FAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENfRKIRGATPLEV-VNIALTETLRRTIHTSMTLL 259
Cdd:PRK12911  1273 ATCAVlvalhFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIRED-RQEKLFTPMPIlINDALQKTLGRTVMTTATTL 1351

                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1844804426  260 LVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYI 294
Cdd:PRK12911  1352 SVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYI 1386
PRK08578 PRK08578
preprotein translocase subunit SecF; Reviewed
 27-265 8.05e-09

preprotein translocase subunit SecF; Reviewed


Pssm-ID: 236302 [Multi-domain]  Cd Length: 292  Bit Score: 55.71  E-value: 8.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  27 IALPAALLSILLTVASIFFIAT-KGLNLGLDFTGGIAAElnysnpVKATDVSNALVKAGFNDP--VVQTLGSDRDLMVRM 103
Cdd:PRK08578   17 IAIPLAVLLLSLLLLGGTFATTgSPVKLGIDFTGGTEIT------IQTNDASPDELESALSGEpgVDVRKGSGNGYIITF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 104 PVQEDVEAEDLTKAITAAVQLPNNTATVPKVDVVGGQVGNELYvRSAgavalalllmlvYVTIRFEFkLAMGAV------ 177
Cdd:PRK08578   91 GSGDDTDVDKLADAVKEFFNVDSISELNYSEKQIGPTFGSQFQ-EQA------------LKAVGFAF-IGMAVVvflifr 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 178 ---------LSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATpLEVVNIALTETL 248
Cdd:PRK08578  157 tpvpslaviLSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLKRRGTFDESI-KRAMRTGITMTL 235

                         250
                  ....*....|....*..
gi 1844804426 249 rrTIHTSMTLLLVVVAM 265
Cdd:PRK08578  236 --TTIAAMAVLYIVSTI 250
SecD COG0342
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ...
 176-294 1.26e-07

Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440111 [Multi-domain]  Cd Length: 434  Bit Score: 52.81  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 176 AVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRkiRGATPLEVVNIALTETLrRTIHTS 255
Cdd:COG0342   299 ANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELR--AGRSLRAAIEAGFKRAF-STILDA 375

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1844804426 256 -MTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYI 294
Cdd:COG0342   376 nVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPV 415
secD TIGR01129
protein-export membrane protein SecD; Members of this family are highly variable in length ...
 176-294 6.97e-07

protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273456 [Multi-domain]  Cd Length: 397  Bit Score: 50.36  E-value: 6.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 176 AVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKirGATPLEVVNIALTETLRRTIHTS 255
Cdd:TIGR01129 276 AAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRL--GKSVRQAIEAGFERAFSTIFDAN 353

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1844804426 256 MTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYI 294
Cdd:TIGR01129 354 ITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVF 392
PRK14726 PRK14726
protein translocase subunit SecDF;
176-304 1.95e-05

protein translocase subunit SecDF;


Pssm-ID: 237805 [Multi-domain]  Cd Length: 855  Bit Score: 46.25  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 176 AVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKirGATPLEVVNIALTETLRRTIHTS 255
Cdd:PRK14726  400 AVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKT--GHSLIQALDRGFSRALATIVDAN 477

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1844804426 256 MTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYssiyigTAFALWRGL 304
Cdd:PRK14726  478 VTILIAAVILFFLGSGAVRGFAVTLAVGILTTVF------TAFTLTRSL 520
Sec_GG pfam07549
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ...
 45-71 2.35e-05

SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.


Pssm-ID: 462205 [Multi-domain]  Cd Length: 27  Bit Score: 40.73  E-value: 2.35e-05
                          10        20
                  ....*....|....*....|....*..
gi 1844804426  45 FIATKGLNLGLDFTGGIAAELNYSNPV 71
Cdd:pfam07549   1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
PRK12911 PRK12911
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 167-301 7.90e-05

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 171815 [Multi-domain]  Cd Length: 1403  Bit Score: 44.46  E-value: 7.90e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  167 RFEFKLAMGAVlslfhdIVVTLGIFAMMQW---PFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRGATplEVVNIA 243
Cdd:PRK12911   931 RFGGVIASGAV------LLNLLLIWAALQYldaPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLS--ESVEAG 1002

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1844804426  244 LTETLRRTIHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGT-AFALW 301
Cdd:PRK12911  1003 YKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKfFFMIW 1061
2A067 TIGR00921
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ...
 174-310 1.13e-04

The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273340 [Multi-domain]  Cd Length: 719  Bit Score: 43.67  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 174 MGAVLSLFhDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKirGATPLEVVNIALTETLRRTIH 253
Cdd:TIGR00921 222 LPLVIILF-GVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDI--GRAKGEAIVTAVRRTGRAVLI 298

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1844804426 254 TSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTA----FALWRGLNRQDFI 310
Cdd:TIGR00921 299 ALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPAllqsIDIGREKVKKEII 359
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
184-286 1.58e-04

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 43.31  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 184 IVVTLGIFAMMQWPFDL--TVLAALLAIIGFSlnDNIVVSDRIRENFRkiRGATPLEVVNIALTETLRRTIHTSMTLLLV 261
Cdd:COG1033   256 VIWTLGLMGLLGIPLSPltILVPPLLLAIGID--YGIHLLNRYREERR--KGLDKREALREALRKLGPPVLLTSLTTAIG 331

                          90       100
                  ....*....|....*....|....*
gi 1844804426 262 VVAMMLMGGDGLKWFSIAMFVGVFV 286
Cdd:COG1033   332 FLSLLFSDIPPIRDFGIVAAIGVLL 356
ACR_tran pfam00873
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ...
 185-270 2.08e-04

AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.


Pssm-ID: 395701 [Multi-domain]  Cd Length: 1021  Bit Score: 43.05  E-value: 2.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  185 VVTLGIFAMMQWpFDLTV----LAALLAIIGFSLNDNIVVSDRIrenFRKIR--GATPLEVVNIALTETLRRTIHTSMTL 258
Cdd:pfam00873  367 LSLLGTFAVMKA-FGFSIntltLGGLVLAIGLVVDDAIVVVENI---ERVLEenGLKPLEAAYKSMGEIGGALVAIALVL 442

                           90
                   ....*....|..
gi 1844804426  259 LLVVVAMMLMGG 270
Cdd:pfam00873  443 SAVFLPILFLGG 454
PRK13024 PRK13024
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
 32-114 3.92e-04

bifunctional preprotein translocase subunit SecD/SecF; Reviewed


Pssm-ID: 237276 [Multi-domain]  Cd Length: 755  Bit Score: 42.14  E-value: 3.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  32 ALLSILLTVASIFFIA----TKGLNLGLDFTGGIAAELNYSNPVKATDVSNALV------------KAGFNDPVVQTLGS 95
Cdd:PRK13024    8 IFFLTLLLLIGIYYASpkfvTKNINLGLDLQGGFEVLLEVSPADKGKKADREALdstvevlrnridGLGVSEPNIQREGN 87

                          90       100
                  ....*....|....*....|
gi 1844804426  96 DRdLMVRMP-VQEDVEAEDL 114
Cdd:PRK13024   88 NR-IRVELPgVQDPERAREL 106
PRK13023 PRK13023
protein translocase subunit SecDF;
172-292 4.36e-04

protein translocase subunit SecDF;


Pssm-ID: 171842 [Multi-domain]  Cd Length: 758  Bit Score: 41.91  E-value: 4.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 172 LAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKirGATPLEVVNIALTETLRRT 251
Cdd:PRK13023  302 LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRK--GYSVVQAMESGFYRALSTI 379

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1844804426 252 IHTSMTLLLVVVAMMLMGGDGLKWFSIAMFVGVFVGTYSSI 292
Cdd:PRK13023  380 VDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTL 420
secD PRK08343
preprotein translocase subunit SecD; Reviewed
 171-287 4.48e-03

preprotein translocase subunit SecD; Reviewed


Pssm-ID: 236245 [Multi-domain]  Cd Length: 417  Bit Score: 38.70  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426 171 KLAMGAVLSLFHDIVVTLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSD----------------RIRENFRKIRGA 234
Cdd:PRK08343  286 RIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDevlhegkvpsrkvflsRIKRAFFIIFAA 365

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1844804426 235 tplevvniALTetlrrtihtsmtlllVVVAM---MLMGGDGLKWFSIAMFVGVFVG 287
Cdd:PRK08343  366 --------AAT---------------TIAAMsplAVMGLGDLKGFAITTILGVLIG 398
RND_permease_2 NF033617
multidrug efflux RND transporter permease subunit;
188-286 9.03e-03

multidrug efflux RND transporter permease subunit;


Pssm-ID: 411236 [Multi-domain]  Cd Length: 1009  Bit Score: 37.69  E-value: 9.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844804426  188 LGIFAMMQWpFD-----LTVLAALLAIiGFSLNDNIVVSDRIrenFRKI-RGATPLEVVNIALTETLRRTIHTSMTLLLV 261
Cdd:NF033617   369 IGTFAVMYL-FGfsinlLTLMALVLAI-GLVVDDAIVVVENI---HRHIeEGESPLEAALKGAREIGFTVIAMTLTLVAV 443

                           90       100
                   ....*....|....*....|....*...
gi 1844804426  262 VVAMMLMG---GDGLKWFSIAMFVGVFV 286
Cdd:NF033617   444 YLPILFMGgltGRLFREFAVTLAGAVII 471
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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