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Conserved domains on  [gi|1846727851|ref|WP_172049382|]
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sodium ion-translocating decarboxylase subunit beta, partial [Klebsiella pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OAD_beta super family cl00816
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 1-107 1.78e-39

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


The actual alignment was detected with superfamily member PRK15477:

Pssm-ID: 445116 [Multi-domain]  Cd Length: 433  Bit Score: 135.86  E-value: 1.78e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLAHHDPAQLAVIAAKLHCAPDVHAIKAAL 80
Cdd:PRK15477   19 GQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEAL 98

                          90       100
                  ....*....|....*....|....*..
gi 1846727851  81 ALALPSVQGQMESLAVDMGYSAGVLAI 107
Cdd:PRK15477   99 ALALPSVQSQMENLAVDMGYTPGVLAL 125
 
Name Accession Description Interval E-value
PRK15477 PRK15477
oxaloacetate decarboxylase subunit beta; Provisional
 1-107 1.78e-39

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185374 [Multi-domain]  Cd Length: 433  Bit Score: 135.86  E-value: 1.78e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLAHHDPAQLAVIAAKLHCAPDVHAIKAAL 80
Cdd:PRK15477   19 GQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEAL 98

                          90       100
                  ....*....|....*....|....*..
gi 1846727851  81 ALALPSVQGQMESLAVDMGYSAGVLAI 107
Cdd:PRK15477   99 ALALPSVQSQMENLAVDMGYTPGVLAL 125
Na_pump_decarbB TIGR01109
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
 1-53 2.49e-13

sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]


Pssm-ID: 130179  Cd Length: 354  Bit Score: 64.03  E-value: 2.49e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLA 53
Cdd:TIGR01109   1 GQAIMLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILA 53
OadB COG1883
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 16-52 8.41e-10

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


Pssm-ID: 441487  Cd Length: 373  Bit Score: 53.97  E-value: 8.41e-10
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1846727851  16 AIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLL 52
Cdd:COG1883    35 AIKKKYEPLLLLPIGFGMILANIPLSGLMEILQGGLL 71
OAD_beta pfam03977
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 16-44 6.16e-09

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


Pssm-ID: 427626  Cd Length: 344  Bit Score: 51.68  E-value: 6.16e-09
                          10        20
                  ....*....|....*....|....*....
gi 1846727851  16 AIAKKFEPLLLLPIGFGGLLSNIPEAGLA 44
Cdd:pfam03977  12 AIKKKYEPLLLLPIGFGMILVNIPGAGLY 40
 
Name Accession Description Interval E-value
PRK15477 PRK15477
oxaloacetate decarboxylase subunit beta; Provisional
 1-107 1.78e-39

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185374 [Multi-domain]  Cd Length: 433  Bit Score: 135.86  E-value: 1.78e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLAHHDPAQLAVIAAKLHCAPDVHAIKAAL 80
Cdd:PRK15477   19 GQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEAL 98

                          90       100
                  ....*....|....*....|....*..
gi 1846727851  81 ALALPSVQGQMESLAVDMGYSAGVLAI 107
Cdd:PRK15477   99 ALALPSVQSQMENLAVDMGYTPGVLAL 125
PRK15475 PRK15475
oxaloacetate decarboxylase subunit beta; Provisional
 1-107 3.00e-39

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185372 [Multi-domain]  Cd Length: 433  Bit Score: 135.09  E-value: 3.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLAHHDPAQLAVIAAKLHCAPDVHAIKAAL 80
Cdd:PRK15475   19 GQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEAL 98

                          90       100
                  ....*....|....*....|....*..
gi 1846727851  81 ALALPSVQGQMESLAVDMGYSAGVLAI 107
Cdd:PRK15475   99 ALALPSVQGQMENLAVDMGYTPGVLAL 125
PRK15476 PRK15476
oxaloacetate decarboxylase subunit beta; Provisional
 1-107 1.02e-37

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185373 [Multi-domain]  Cd Length: 433  Bit Score: 131.24  E-value: 1.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLAHHDPAQLAVIAAKLHCAPDVHAIKAAL 80
Cdd:PRK15476   19 GQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEAL 98

                          90       100
                  ....*....|....*....|....*..
gi 1846727851  81 ALALPSVQGQMESLAVDMGYSAGVLAI 107
Cdd:PRK15476   99 ALALPSVQGQMENLAVDMGYTPGVLAL 125
Na_pump_decarbB TIGR01109
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
 1-53 2.49e-13

sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]


Pssm-ID: 130179  Cd Length: 354  Bit Score: 64.03  E-value: 2.49e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1846727851   1 GQAAMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLLA 53
Cdd:TIGR01109   1 GQAIMLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILA 53
OadB COG1883
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 16-52 8.41e-10

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


Pssm-ID: 441487  Cd Length: 373  Bit Score: 53.97  E-value: 8.41e-10
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1846727851  16 AIAKKFEPLLLLPIGFGGLLSNIPEAGLALTALESLL 52
Cdd:COG1883    35 AIKKKYEPLLLLPIGFGMILANIPLSGLMEILQGGLL 71
OAD_beta pfam03977
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 16-44 6.16e-09

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


Pssm-ID: 427626  Cd Length: 344  Bit Score: 51.68  E-value: 6.16e-09
                          10        20
                  ....*....|....*....|....*....
gi 1846727851  16 AIAKKFEPLLLLPIGFGGLLSNIPEAGLA 44
Cdd:pfam03977  12 AIKKKYEPLLLLPIGFGMILVNIPGAGLY 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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