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Conserved domains on  [gi|1850027861|ref|WP_172847147|]
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AraC family transcriptional regulator [Vibrio coralliilyticus]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 11462009)

AraC family transcriptional regulator controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
218-977 2.85e-34

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


:

Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 142.44  E-value: 2.85e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  218 VGTRHGAILFN------FNHPDATLKRIPGGHVLSIAETQKGY-WIGTESGLQSYSFASQEsayFAReHTHSHALFGEKV 290
Cdd:COG3292     51 IGTEDGLNRYDgyefkvFRHDPGDPNSLPSNYIRALLEDSDGRlWIGTDGGLSRYDPKTDK---FTR-YPLDPGLPNNSI 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  291 YSLLNDHRGGMWIATERGIHYFSLFAHHFKRFPDLMLTRGSASeKLIQLTNKK----SRSGFWMVTNV-GVYSL------ 359
Cdd:COG3292    127 RSIAEDSDGNIWVGTSNGLYRYDPKTGKFKRFTLDGLPSNTIT-SLAEDADGNlwvdSDGNLWIGTDGnGLYRLdpntgk 205

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  360 --KLNHKASRKLLYKGRVNDVIE-HNGVLWLATEN-GIICIDSVSG--TVIADRLPNFLKTSSVELLELDNNGRIW---- 429
Cdd:COG3292    206 feHITHDPDPNSLSSNSIYSLFEdREGNLWVGTYGgGLNYLDPNNSkfKSYRHNDPNGLSGNSVRSIAEDSDGNLWirlw 285

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  430 -GASDHKLWRFDTQSRELMQYGSEWMLNKYlpaqVTQMAVADNGSLILGTDHGTYVLINGQ----IHYVSASE-HYGRVA 503
Cdd:COG3292    286 iGTYGGGLFRLDPKTGKFKRYNPNGLPSNS----VYSILEDSDGNLWIGTSGGGLYRYDPKtgkfTKFSEDNGlSNNFIR 361

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  504 SIKEVNGGEIWVASTYGLYQLDAASLQLNSLTMVDDHITPK-----CLISNSNG-VWM-TSSAGLTHYAKSGQIAAHYGE 576
Cdd:COG3292    362 SILEDSDGNLWVGTNGGLYRLDPKTGKFTNFTHDPDKNGLSsnyinSIFEDSDGrLWIgTDGGGLYRYDPKTGKFKHFTT 441

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  577 PLGLVNNEFQS------------GLCSSGSESLQNLLIGSRRNLIKVDTKSLSASKSPNVQVIYSQVVANQDLYSLGGSV 644
Cdd:COG3292    442 KDGLPSNTIYSileddngnlwnfNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTL 521

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  645 LGAPHVTYGESIAFQFGVLPQVSNVSLQYRLGEQDEWQNLEGMKLTIEHILPGDYALEVRAVNNGMAQSAIEPFVFSVDE 724
Cdd:COG3292    522 LLLALLLLLSLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLRLLLLLLLLELLERLLALLLEIELLLTLLLLLLLLLLL 601

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  725 PWYIRGYAIFSYVTAVFILLALVIYWRSRMMARTNKDLRSQVALKTNQLRHQSRILLTNNDQLRKQLQIRRILYRQSVQS 804
Cdd:COG3292    602 LLLLLILLLLLLLLLLLLILLLLLLLLLLLLILLLLLLLLLLLLLLLLRLLLELLLLELELLLELLLLLAELILELLLIL 681

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  805 LRERLQGCASQTTTDSEQGKQQLLRFMIHELDLLLNVRAANGDALPVYNLSLVLRSALDGWQEELIKAGLSVEVHSVEDK 884
Cdd:COG3292    682 LLLLLLLLLALLLLLLLLLALKLLLLLLLILLLLLLLLGLLLLLLDLVLLLLLLILLIILLLLILLEELLLANDIELEGI 761

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  885 DIYVTLDVFNLDSVFNLLIDNLIKRSYRGQVVLMRYRINDGEVSFSMTEQGAKLDDASVTPIELWNEIESLVKENGGSFH 964
Cdd:COG3292    762 LLLILLVLELLLELALGLILLLKLLLLLLNLLIGLIKETVSEGSILLKLLVLELELAESVLIALEGLGKIDLLDILELIL 841

                          810
                   ....*....|...
gi 1850027861  965 RYSSDERNLIEFV 977
Cdd:COG3292    842 LELELGLLLGLLL 854
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
1029-1103 1.54e-25

helix_turn_helix, arabinose operon control protein;


:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 101.09  E-value: 1.54e-25
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1850027861  1029 AKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:smart00342    8 AEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLsVTEIALRVGFSSQSYFSRAFKKLFGVTPSEY 83
 
Name Accession Description Interval E-value
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
218-977 2.85e-34

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 142.44  E-value: 2.85e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  218 VGTRHGAILFN------FNHPDATLKRIPGGHVLSIAETQKGY-WIGTESGLQSYSFASQEsayFAReHTHSHALFGEKV 290
Cdd:COG3292     51 IGTEDGLNRYDgyefkvFRHDPGDPNSLPSNYIRALLEDSDGRlWIGTDGGLSRYDPKTDK---FTR-YPLDPGLPNNSI 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  291 YSLLNDHRGGMWIATERGIHYFSLFAHHFKRFPDLMLTRGSASeKLIQLTNKK----SRSGFWMVTNV-GVYSL------ 359
Cdd:COG3292    127 RSIAEDSDGNIWVGTSNGLYRYDPKTGKFKRFTLDGLPSNTIT-SLAEDADGNlwvdSDGNLWIGTDGnGLYRLdpntgk 205

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  360 --KLNHKASRKLLYKGRVNDVIE-HNGVLWLATEN-GIICIDSVSG--TVIADRLPNFLKTSSVELLELDNNGRIW---- 429
Cdd:COG3292    206 feHITHDPDPNSLSSNSIYSLFEdREGNLWVGTYGgGLNYLDPNNSkfKSYRHNDPNGLSGNSVRSIAEDSDGNLWirlw 285

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  430 -GASDHKLWRFDTQSRELMQYGSEWMLNKYlpaqVTQMAVADNGSLILGTDHGTYVLINGQ----IHYVSASE-HYGRVA 503
Cdd:COG3292    286 iGTYGGGLFRLDPKTGKFKRYNPNGLPSNS----VYSILEDSDGNLWIGTSGGGLYRYDPKtgkfTKFSEDNGlSNNFIR 361

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  504 SIKEVNGGEIWVASTYGLYQLDAASLQLNSLTMVDDHITPK-----CLISNSNG-VWM-TSSAGLTHYAKSGQIAAHYGE 576
Cdd:COG3292    362 SILEDSDGNLWVGTNGGLYRLDPKTGKFTNFTHDPDKNGLSsnyinSIFEDSDGrLWIgTDGGGLYRYDPKTGKFKHFTT 441

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  577 PLGLVNNEFQS------------GLCSSGSESLQNLLIGSRRNLIKVDTKSLSASKSPNVQVIYSQVVANQDLYSLGGSV 644
Cdd:COG3292    442 KDGLPSNTIYSileddngnlwnfNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTL 521

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  645 LGAPHVTYGESIAFQFGVLPQVSNVSLQYRLGEQDEWQNLEGMKLTIEHILPGDYALEVRAVNNGMAQSAIEPFVFSVDE 724
Cdd:COG3292    522 LLLALLLLLSLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLRLLLLLLLLELLERLLALLLEIELLLTLLLLLLLLLLL 601

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  725 PWYIRGYAIFSYVTAVFILLALVIYWRSRMMARTNKDLRSQVALKTNQLRHQSRILLTNNDQLRKQLQIRRILYRQSVQS 804
Cdd:COG3292    602 LLLLLILLLLLLLLLLLLILLLLLLLLLLLLILLLLLLLLLLLLLLLLRLLLELLLLELELLLELLLLLAELILELLLIL 681

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  805 LRERLQGCASQTTTDSEQGKQQLLRFMIHELDLLLNVRAANGDALPVYNLSLVLRSALDGWQEELIKAGLSVEVHSVEDK 884
Cdd:COG3292    682 LLLLLLLLLALLLLLLLLLALKLLLLLLLILLLLLLLLGLLLLLLDLVLLLLLLILLIILLLLILLEELLLANDIELEGI 761

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  885 DIYVTLDVFNLDSVFNLLIDNLIKRSYRGQVVLMRYRINDGEVSFSMTEQGAKLDDASVTPIELWNEIESLVKENGGSFH 964
Cdd:COG3292    762 LLLILLVLELLLELALGLILLLKLLLLLLNLLIGLIKETVSEGSILLKLLVLELELAESVLIALEGLGKIDLLDILELIL 841

                          810
                   ....*....|...
gi 1850027861  965 RYSSDERNLIEFV 977
Cdd:COG3292    842 LELELGLLLGLLL 854
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
1029-1103 1.54e-25

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 101.09  E-value: 1.54e-25
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1850027861  1029 AKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:smart00342    8 AEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLsVTEIALRVGFSSQSYFSRAFKKLFGVTPSEY 83
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
962-1103 4.87e-24

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 102.94  E-value: 4.87e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  962 SFHRYSSDERNLIEFVWPVGSEFEENSIVQLTDTGLSEEQSKDPWIEKLEALVVQHYSDPEFGTASAAKQMYVSERSLQR 1041
Cdd:COG2207    108 LLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSR 187

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1850027861 1042 RFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:COG2207    188 LFKEETGTSPKQYLRELRLERAKRLLAETDLsISEIAYELGFSSQSHFSRAFKKRFGVTPSEY 250
HTH_18 pfam12833
Helix-turn-helix domain;
1029-1103 4.51e-23

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 93.81  E-value: 4.51e-23
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1850027861 1029 AKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLL--AGEKISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:pfam12833    2 AAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLedTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEY 78
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 1009-1103 2.48e-12

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 68.90  E-value: 2.48e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1009 KLEALVVQHYSDPEFGTASAAKQMYVSERSLQRRFK----SAAErtfmdYVTEVRLDYACRRL---LAGEKISDVAFECG 1081
Cdd:PRK09685   201 KVVALIDQSIQEEILRPEWIAGELGISVRSLYRLFAeqglVVAQ-----YIRNRRLDRCADDLrpaADDEKITSIAYKWG 275

                           90       100
                   ....*....|....*....|..
gi 1850027861 1082 FNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK09685   276 FSDSSHFSTAFKQRFGVSPGEY 297
 
Name Accession Description Interval E-value
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
218-977 2.85e-34

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 142.44  E-value: 2.85e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  218 VGTRHGAILFN------FNHPDATLKRIPGGHVLSIAETQKGY-WIGTESGLQSYSFASQEsayFAReHTHSHALFGEKV 290
Cdd:COG3292     51 IGTEDGLNRYDgyefkvFRHDPGDPNSLPSNYIRALLEDSDGRlWIGTDGGLSRYDPKTDK---FTR-YPLDPGLPNNSI 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  291 YSLLNDHRGGMWIATERGIHYFSLFAHHFKRFPDLMLTRGSASeKLIQLTNKK----SRSGFWMVTNV-GVYSL------ 359
Cdd:COG3292    127 RSIAEDSDGNIWVGTSNGLYRYDPKTGKFKRFTLDGLPSNTIT-SLAEDADGNlwvdSDGNLWIGTDGnGLYRLdpntgk 205

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  360 --KLNHKASRKLLYKGRVNDVIE-HNGVLWLATEN-GIICIDSVSG--TVIADRLPNFLKTSSVELLELDNNGRIW---- 429
Cdd:COG3292    206 feHITHDPDPNSLSSNSIYSLFEdREGNLWVGTYGgGLNYLDPNNSkfKSYRHNDPNGLSGNSVRSIAEDSDGNLWirlw 285

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  430 -GASDHKLWRFDTQSRELMQYGSEWMLNKYlpaqVTQMAVADNGSLILGTDHGTYVLINGQ----IHYVSASE-HYGRVA 503
Cdd:COG3292    286 iGTYGGGLFRLDPKTGKFKRYNPNGLPSNS----VYSILEDSDGNLWIGTSGGGLYRYDPKtgkfTKFSEDNGlSNNFIR 361

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  504 SIKEVNGGEIWVASTYGLYQLDAASLQLNSLTMVDDHITPK-----CLISNSNG-VWM-TSSAGLTHYAKSGQIAAHYGE 576
Cdd:COG3292    362 SILEDSDGNLWVGTNGGLYRLDPKTGKFTNFTHDPDKNGLSsnyinSIFEDSDGrLWIgTDGGGLYRYDPKTGKFKHFTT 441

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  577 PLGLVNNEFQS------------GLCSSGSESLQNLLIGSRRNLIKVDTKSLSASKSPNVQVIYSQVVANQDLYSLGGSV 644
Cdd:COG3292    442 KDGLPSNTIYSileddngnlwnfNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTL 521

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  645 LGAPHVTYGESIAFQFGVLPQVSNVSLQYRLGEQDEWQNLEGMKLTIEHILPGDYALEVRAVNNGMAQSAIEPFVFSVDE 724
Cdd:COG3292    522 LLLALLLLLSLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLRLLLLLLLLELLERLLALLLEIELLLTLLLLLLLLLLL 601

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  725 PWYIRGYAIFSYVTAVFILLALVIYWRSRMMARTNKDLRSQVALKTNQLRHQSRILLTNNDQLRKQLQIRRILYRQSVQS 804
Cdd:COG3292    602 LLLLLILLLLLLLLLLLLILLLLLLLLLLLLILLLLLLLLLLLLLLLLRLLLELLLLELELLLELLLLLAELILELLLIL 681

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  805 LRERLQGCASQTTTDSEQGKQQLLRFMIHELDLLLNVRAANGDALPVYNLSLVLRSALDGWQEELIKAGLSVEVHSVEDK 884
Cdd:COG3292    682 LLLLLLLLLALLLLLLLLLALKLLLLLLLILLLLLLLLGLLLLLLDLVLLLLLLILLIILLLLILLEELLLANDIELEGI 761

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  885 DIYVTLDVFNLDSVFNLLIDNLIKRSYRGQVVLMRYRINDGEVSFSMTEQGAKLDDASVTPIELWNEIESLVKENGGSFH 964
Cdd:COG3292    762 LLLILLVLELLLELALGLILLLKLLLLLLNLLIGLIKETVSEGSILLKLLVLELELAESVLIALEGLGKIDLLDILELIL 841

                          810
                   ....*....|...
gi 1850027861  965 RYSSDERNLIEFV 977
Cdd:COG3292    842 LELELGLLLGLLL 854
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
177-522 2.55e-26

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 116.63  E-value: 2.55e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  177 WVlATNSGVYLSDG-----SHFEHAPRSGTSHIETLYFSENRQeLVVGTRHGaiLFNFNHPDATLKRI-----PGGHVLS 246
Cdd:COG3292     95 WI-GTDGGLSRYDPktdkfTRYPLDPGLPNNSIRSIAEDSDGN-IWVGTSNG--LYRYDPKTGKFKRFtldglPSNTITS 170

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  247 IAETQKG---------YWIGTE-SGLQSYSFASQESAYFaREHTHSHALFGEKVYSLLNDHRGGMWIATER-GIHYFSLF 315
Cdd:COG3292    171 LAEDADGnlwvdsdgnLWIGTDgNGLYRLDPNTGKFEHI-THDPDPNSLSSNSIYSLFEDREGNLWVGTYGgGLNYLDPN 249

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  316 AHHFKRFPDLmlTRGSASEKLIQLTNKKSRSGFWMV-----TNVGVYSLKLNHKASRKLLYKGRVNDVI-----EHNGVL 385
Cdd:COG3292    250 NSKFKSYRHN--DPNGLSGNSVRSIAEDSDGNLWIRlwigtYGGGLFRLDPKTGKFKRYNPNGLPSNSVysileDSDGNL 327

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  386 WLATE-NGIICIDSVSGTVIADRLPNFLKTSSVELLELDNNGRIWGASDHKLWRFDTQSRELMQYGSEWMLNKYLPAQVT 464
Cdd:COG3292    328 WIGTSgGGLYRYDPKTGKFTKFSEDNGLSNNFIRSILEDSDGNLWVGTNGGLYRLDPKTGKFTNFTHDPDKNGLSSNYIN 407

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1850027861  465 QMAVADNGSLILGTDHG---TYVLINGQIHYVSASEH--YGRVASIKEVNGGEIWVASTYGLY 522
Cdd:COG3292    408 SIFEDSDGRLWIGTDGGglyRYDPKTGKFKHFTTKDGlpSNTIYSILEDDNGNLWNFNSASNL 470
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
1029-1103 1.54e-25

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 101.09  E-value: 1.54e-25
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1850027861  1029 AKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:smart00342    8 AEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLsVTEIALRVGFSSQSYFSRAFKKLFGVTPSEY 83
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
962-1103 4.87e-24

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 102.94  E-value: 4.87e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  962 SFHRYSSDERNLIEFVWPVGSEFEENSIVQLTDTGLSEEQSKDPWIEKLEALVVQHYSDPEFGTASAAKQMYVSERSLQR 1041
Cdd:COG2207    108 LLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSR 187

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1850027861 1042 RFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:COG2207    188 LFKEETGTSPKQYLRELRLERAKRLLAETDLsISEIAYELGFSSQSHFSRAFKKRFGVTPSEY 250
HTH_18 pfam12833
Helix-turn-helix domain;
1029-1103 4.51e-23

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 93.81  E-value: 4.51e-23
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1850027861 1029 AKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLL--AGEKISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:pfam12833    2 AAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLedTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEY 78
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 1004-1103 6.58e-22

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 97.92  E-value: 6.58e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1004 DPWIEKLEALVVQHYSDPeFGTASAAKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFECGF 1082
Cdd:COG4977    209 DPRLARAQAWMEANLEEP-LSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLsIEEIAAACGF 287

                           90       100
                   ....*....|....*....|.
gi 1850027861 1083 NDPSYFSQRFKHRFGVSPSQF 1103
Cdd:COG4977    288 GSASHFRRAFRRRFGVSPSAY 308
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
266-1003 5.13e-20

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 96.21  E-value: 5.13e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  266 SFASQESAYFAREHTHSHALFGEKVYSLLNDHRGGMWIATERGIHYFSlfAHHFKRFPDLMLTRGSASEKLIQLTNKKSR 345
Cdd:COG3292     14 LFAQAAQQYRFRHLTVEDGLPQNSVNSIAQDSDGFLWIGTEDGLNRYD--GYEFKVFRHDPGDPNSLPSNYIRALLEDSD 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  346 SGFWMVTNVGVYSL-----KLNHKASRKLLYKGRVNDVIE-HNGVLWLATENGIICIDSVSGTVIADRLPNFLKTSSVEL 419
Cdd:COG3292     92 GRLWIGTDGGLSRYdpktdKFTRYPLDPGLPNNSIRSIAEdSDGNIWVGTSNGLYRYDPKTGKFKRFTLDGLPSNTITSL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  420 LE-------LDNNGRIWGASDHK-LWRFDTQSRELMQYGSEWMLNKYLPAQVTQMAVADNGSLILGTDHG---TYVLING 488
Cdd:COG3292    172 AEdadgnlwVDSDGNLWIGTDGNgLYRLDPNTGKFEHITHDPDPNSLSSNSIYSLFEDREGNLWVGTYGGglnYLDPNNS 251

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  489 QIHYVSASEHYG----RVASIKEVNGGEIWV---ASTY--GLYQLDAASLQL---NSLTMVDDHITpkCLISNSNG-VWM 555
Cdd:COG3292    252 KFKSYRHNDPNGlsgnSVRSIAEDSDGNLWIrlwIGTYggGLFRLDPKTGKFkryNPNGLPSNSVY--SILEDSDGnLWI 329

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  556 -TSSAGLTHYAKSGQIAAHYGEPLGLVNNEFQSGLCSSGseslQNLLIGSRRNLIKVDTKS--------LSASKSPNVQV 626
Cdd:COG3292    330 gTSGGGLYRYDPKTGKFTKFSEDNGLSNNFIRSILEDSD----GNLWVGTNGGLYRLDPKTgkftnfthDPDKNGLSSNY 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  627 IYSQVVANQD------------LYSLGGSVLGAPHVTYGESIAFQFGVLP-----------QVSNVSLQYRLGEQDEWQN 683
Cdd:COG3292    406 INSIFEDSDGrlwigtdggglyRYDPKTGKFKHFTTKDGLPSNTIYSILEddngnlwnfnsASNLGLLSLLGGLLGGLNL 485

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  684 LEGMKLTIEHILPGDYALEVRAVNNGMAQSAIEPFVFSVDEPWYIRGYAIFSYVTAVFILLALVIYWRSRMMARTNKDLR 763
Cdd:COG3292    486 GNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTLLLLALLLLLSLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLRL 565

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  764 SQVALKTNQLRHQSRILLTNNDQLRKQLQIRRILYRQSVQSLRERLQGCASQTTTDSEQGKQQLLRFMIHELDLLLNVRA 843
Cdd:COG3292    566 LLLLLLLELLERLLALLLEIELLLTLLLLLLLLLLLLLLLLILLLLLLLLLLLLILLLLLLLLLLLLILLLLLLLLLLLL 645

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  844 ANGDALPVYNLSLVLRSALDGWQEELIKAGLSVEVHSVEDKDIYVTLDVFNLDSVFNLLIDNLIKRSYRGQVVLMRYRIN 923
Cdd:COG3292    646 LLLLRLLLELLLLELELLLELLLLLAELILELLLILLLLLLLLLLALLLLLLLLLALKLLLLLLLILLLLLLLLGLLLLL 725

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  924 DGEVSFSMTEQGAKLDDASVTPIELWNEIESLVKENGGSFHRYSSDERNLIEFVWPVGSEFEENSIVQLTDTGLSEEQSK 1003
Cdd:COG3292    726 LDLVLLLLLLILLIILLLLILLEELLLANDIELEGILLLILLVLELLLELALGLILLLKLLLLLLNLLIGLIKETVSEGS 805
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
126-429 4.57e-17

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 86.97  E-value: 4.57e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  126 SNRYVWVSDASNFYTYHVDSGEFSSYSLMELYQYNQSAQINITDAKL-IQSK---WVLATNSGVYLSDG-----SHFEHA 196
Cdd:COG3292    133 SDGNIWVGTSNGLYRYDPKTGKFKRFTLDGLPSNTITSLAEDADGNLwVDSDgnlWIGTDGNGLYRLDPntgkfEHITHD 212

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  197 PRSGT---SHIETLYfsENRQELV-VGT-RHGAILFN-----FNH-PDATLKRIPGGHVLSIAETQKG-----YWIGTES 260
Cdd:COG3292    213 PDPNSlssNSIYSLF--EDREGNLwVGTyGGGLNYLDpnnskFKSyRHNDPNGLSGNSVRSIAEDSDGnlwirLWIGTYG 290

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  261 -GLQSYSFASQESayfarEHTHSHALFGEKVYSLLNDHRGGMWIATER-GIHYFSLFAHHFKRFPDLMLTRGSASEKLIQ 338
Cdd:COG3292    291 gGLFRLDPKTGKF-----KRYNPNGLPSNSVYSILEDSDGNLWIGTSGgGLYRYDPKTGKFTKFSEDNGLSNNFIRSILE 365

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  339 LTNKKsrsgFWMVTNVGVYSLKLN--------HKASRKLLYKGRVNDVIE-HNGVLWLATEN-GIICIDSVSGTVIADRL 408
Cdd:COG3292    366 DSDGN----LWVGTNGGLYRLDPKtgkftnftHDPDKNGLSSNYINSIFEdSDGRLWIGTDGgGLYRYDPKTGKFKHFTT 441

                          330       340
                   ....*....|....*....|.
gi 1850027861  409 PNFLKTSSVELLELDNNGRIW 429
Cdd:COG3292    442 KDGLPSNTIYSILEDDNGNLW 462
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 1004-1103 2.65e-15

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 78.94  E-value: 2.65e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1004 DPWIEKLEALVVQHYSDPEfGTASAAKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLLAGEKISDVAFECGFN 1083
Cdd:COG2169     83 ADLVARACRLIEAGAEDRP-SLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGLSVTDAAYAAGFG 161

                           90       100
                   ....*....|....*....|
gi 1850027861 1084 DPSYFSQRFKHRFGVSPSQF 1103
Cdd:COG2169    162 SLSRFYEAFKKLLGMTPSAY 181
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 1009-1103 2.48e-12

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 68.90  E-value: 2.48e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1009 KLEALVVQHYSDPEFGTASAAKQMYVSERSLQRRFK----SAAErtfmdYVTEVRLDYACRRL---LAGEKISDVAFECG 1081
Cdd:PRK09685   201 KVVALIDQSIQEEILRPEWIAGELGISVRSLYRLFAeqglVVAQ-----YIRNRRLDRCADDLrpaADDEKITSIAYKWG 275

                           90       100
                   ....*....|....*....|..
gi 1850027861 1082 FNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK09685   276 FSDSSHFSTAFKQRFGVSPGEY 297
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
1017-1100 1.44e-08

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 57.38  E-value: 1.44e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1017 HYSDpEFGTASAAKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYAcRRLL--AGEKISDVAFECGFNDPSYFSQRFKH 1094
Cdd:PRK13503   183 HFAE-EVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKA-RHLLrhSDASVTDIAYRCGFGDSNHFSTLFRR 260


                   ....*.
gi 1850027861 1095 RFGVSP 1100
Cdd:PRK13503   261 EFSWSP 266
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 1072-1104 1.85e-07

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 48.30  E-value: 1.85e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1850027861 1072 KISDVAFECGFnDPSYFSQRFKHRFGVSPSQFI 1104
Cdd:pfam00165   10 TIADIADELGF-SRSYFSRLFKKYTGVTPSQYR 41
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
1023-1103 4.34e-07

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 52.98  E-value: 4.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1023 FGTASAAKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYAcRRLLAGEK--ISDVAFECGFNDPSYFSQRFKHRFGVSP 1100
Cdd:PRK13501   193 FDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHA-KCLLRGSEhrISDIAARCGFEDSNYFSAVFTREAGMTP 271


                   ...
gi 1850027861 1101 SQF 1103
Cdd:PRK13501   272 RDY 274
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
1002-1103 1.17e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 51.59  E-value: 1.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1002 SKDPWIEKLEALVVQHYSDPeFGTASAAKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYAcRRLLAGEK--ISDVAFE 1079
Cdd:PRK13502   173 SRETLLDKLITALANSLECP-FALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHA-QYLLQHSPlmISEISMQ 250

                           90       100
                   ....*....|....*....|....
gi 1850027861 1080 CGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK13502   251 CGFEDSNYFSVVFTRETGMTPSQW 274
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
998-1103 2.65e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 50.49  E-value: 2.65e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  998 SEEQSKDPWIEKLEALVVQHYSDPEFGTASAAkqmyvSERSLQRRFKSAAERTFMDYVTEVRLDYAcRRLLAGEK--ISD 1075
Cdd:PRK13500   203 SSETLLDKLITRLAASLKSPFALDKFCDEASC-----SERVLRQQFRQQTGMTINQYLRQVRVCHA-QYLLQHSRllISD 276

                           90       100
                   ....*....|....*....|....*...
gi 1850027861 1076 VAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK13500   277 ISTECGFEDSNYFSVVFTRETGMTPSQW 304
PRK15185 PRK15185
transcriptional regulator HilD; Provisional
 1018-1105 1.17e-05

transcriptional regulator HilD; Provisional


Pssm-ID: 185107 [Multi-domain]  Cd Length: 309  Bit Score: 48.45  E-value: 1.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1018 YSDP--EFGTASAAKQMYVSERSLQRrfKSAAERT-FMDYVTEVRLDYACRRLLAGE-KISDVAFECGFNDPSYFSQRFK 1093
Cdd:PRK15185   216 SSSPsrQWKLTDVADHIFMSTSTLKR--KLAEEGTsFSDIYLSARMNQAAKLLRIGNhNVNAVALKCGYDSTSYFIQCFK 293

                           90
                   ....*....|..
gi 1850027861 1094 HRFGVSPSQFIE 1105
Cdd:PRK15185   294 KYFKTTPSTFIK 305
ftrA PRK09393
transcriptional activator FtrA; Provisional
 1026-1103 1.85e-05

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 48.04  E-value: 1.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1026 ASAAKQMYVSERSLQRRFKSAAERTFMDYVTEVRLDYAcRRLLAGEKIS--DVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK09393   238 ASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARA-RDLLESSALSidQIAERAGFGSEESLRHHFRRRAATSPAAY 316
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
1002-1103 2.74e-05

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 44.15  E-value: 2.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1002 SKDPWIEKLEALVVQHYSDPEFGTASAAKQMYvSERSLQRRFKSAAERTFMDYVTEVRLDYACRRLLAGEK-ISDVAFEC 1080
Cdd:PRK10219     2 SHQKIIQTLIAWIDEHIDQPLNIDVVAKKSGY-SKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERpIFDIAMDL 80

                           90       100
                   ....*....|....*....|...
gi 1850027861 1081 GFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK10219    81 GYVSQQTFSRVFRRQFDRTPSDY 103
PRK15044 PRK15044
transcriptional regulator SirC; Provisional
 1022-1104 2.86e-05

transcriptional regulator SirC; Provisional


Pssm-ID: 185004 [Multi-domain]  Cd Length: 295  Bit Score: 47.34  E-value: 2.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1022 EFGTASAAKQMYVSERSLQRRFkSAAERTFMDYVTEVRLDYACRRLLAGE-KISDVAFECGFNDPSYFSQRFKHRFGVSP 1100
Cdd:PRK15044   208 KWSQAEVAGKLFMSVSSLKRKL-AAEEVSFSKIYLDARMNQAIKLLRMGAgNISQVATMCGYDTPSYFIAIFKRHFKITP 286


                   ....
gi 1850027861 1101 SQFI 1104
Cdd:PRK15044   287 LSFM 290
PRK15186 PRK15186
AraC family transcriptional regulator; Provisional
 997-1104 1.74e-04

AraC family transcriptional regulator; Provisional


Pssm-ID: 185108 [Multi-domain]  Cd Length: 291  Bit Score: 44.67  E-value: 1.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861  997 LSEEQSKDPWIEKLEALVVQHYSDpEFGTASAAKQMYVSERSLQRRFKSAaERTFMDYVTEVRLDYACRRLLAGE-KISD 1075
Cdd:PRK15186   173 LFRELSQNTLAENIYNIIISDISR-KWALKDISDSLYMSCSTLKRKLKQE-NTSFSEVYLNARMNKATKLLRNSEyNITR 250

                           90       100
                   ....*....|....*....|....*....
gi 1850027861 1076 VAFECGFNDPSYFSQRFKHRFGVSPSQFI 1104
Cdd:PRK15186   251 VAYMCGYDSASYFTCVFKKHFKTTPSEFL 279
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
1070-1103 1.31e-03

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 42.27  E-value: 1.31e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1850027861 1070 GEKISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK10572   248 RMPIATIGRNVGYDDQLYFSRVFKKCTGASPSEF 281
PRK09940 PRK09940
transcriptional regulator YdeO; Provisional
 1032-1102 1.84e-03

transcriptional regulator YdeO; Provisional


Pssm-ID: 182157 [Multi-domain]  Cd Length: 253  Bit Score: 41.22  E-value: 1.84e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1850027861 1032 MYVSERSLQRRFKSAaERTFMDYVTEVRLDYACRRLLAGEKISDVAFECGFNDPSYFSQRFKHRFGVSPSQ 1102
Cdd:PRK09940   160 LYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229
PRK10296 PRK10296
DNA-binding transcriptional regulator ChbR; Provisional
 1027-1103 2.22e-03

DNA-binding transcriptional regulator ChbR; Provisional


Pssm-ID: 182362 [Multi-domain]  Cd Length: 278  Bit Score: 41.28  E-value: 2.22e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1850027861 1027 SAAKQMYVSeRSLQRRFKsaaeRTFMDYVTEVRLDYACRRL-LAGEKISDVAFECGFNDPSYFSQRFKHRFGVSPSQF 1103
Cdd:PRK10296   198 SGKSQEYLT-RATRRYYG----KTPMQIINEIRINFAKKQLeMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSY 270
PRK09978 PRK09978
DNA-binding transcriptional regulator GadX; Provisional
 1022-1105 3.55e-03

DNA-binding transcriptional regulator GadX; Provisional


Pssm-ID: 137624 [Multi-domain]  Cd Length: 274  Bit Score: 40.68  E-value: 3.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1850027861 1022 EFGTASAAKQMYVSERSLQRRFKsAAERTFMDYVTEVRLDYACRRLLA-GEKISDVAFECGFNDPSYFSQRFKHRFGVSP 1100
Cdd:PRK09978   158 EWTLARIASELLMSPSLLKKKLR-EEETSYSQLLTECRMQRALQLIVIhGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTP 236


                   ....*
gi 1850027861 1101 SQFIE 1105
Cdd:PRK09978   237 TEYQE 241
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
1057-1104 4.24e-03

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 40.53  E-value: 4.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1850027861 1057 EVRLDYACRRLLAGEKISDVAFECGFNdPSYFSQRFKHRFGVSPSQFI 1104
Cdd:COG2207    155 LLLLLLLLLLLLLLLTLEELARELGLS-PRTLSRLFKEETGTSPKQYL 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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