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Conserved domains on  [gi|1853384859|ref|WP_174418999|]
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MULTISPECIES: NlpC/P60 family protein [Burkholderia cepacia complex]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
6-175 7.06e-49

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 164.10  E-value: 7.06e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859   6 VPVAVVSLLAACSSLPPQSASREPGMKITTPRAFPAPANFPKFVDHSVGQEEISIQAMSLVGVPYRWGGNTPtSGFDCSG 85
Cdd:COG0791    51 LLAGPAAAVAGAAAPAVGSAGAAAAAAAAKAGSSAAKSAAGASAPPSSTAEAIVAAALSYLGTPYVWGGTSP-SGFDCSG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  86 LVRYVIgRAADVNLPRTTADMSGRGVSIDPDQIAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYW 165
Cdd:COG0791   130 LVQYVY-RQAGISLPRTSADQAAAGTPVSRSELQPGDLVFFRTGGGGISHVGIYLGNGKFIHASSSGKGVRISSLDSPYW 208

                         170
                  ....*....|
gi 1853384859 166 AKRFDGIRRV 175
Cdd:COG0791   209 KSRYVGARRV 218
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
173-353 2.04e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 46.41  E-value: 2.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 173 RRVAPPRATPTPFDAPTYEA---KRDEPRNPPAVAPAPVMTATAPRPPAHASSQAGATQSPAPV---MPAARAVTTAAVA 246
Cdd:PRK12323  388 AAAAPAAAAPAPAAPPAAPAaapAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPApapAAAPAAAARPAAA 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 247 PAAASADPYEPPPPRVQAARQQATSANGDGGPTAMTANAAPAGPAEVGAQIPTTALTAAQAAAFDAEPPPAAAATASRDT 326
Cdd:PRK12323  468 GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

                         170       180
                  ....*....|....*....|....*..
gi 1853384859 327 DPAPVQVLRASTQSSPVSPRTGTADDP 353
Cdd:PRK12323  548 APAPRAAAATEPVVAPRPPRASASGLP 574
 
Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
6-175 7.06e-49

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 164.10  E-value: 7.06e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859   6 VPVAVVSLLAACSSLPPQSASREPGMKITTPRAFPAPANFPKFVDHSVGQEEISIQAMSLVGVPYRWGGNTPtSGFDCSG 85
Cdd:COG0791    51 LLAGPAAAVAGAAAPAVGSAGAAAAAAAAKAGSSAAKSAAGASAPPSSTAEAIVAAALSYLGTPYVWGGTSP-SGFDCSG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  86 LVRYVIgRAADVNLPRTTADMSGRGVSIDPDQIAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYW 165
Cdd:COG0791   130 LVQYVY-RQAGISLPRTSADQAAAGTPVSRSELQPGDLVFFRTGGGGISHVGIYLGNGKFIHASSSGKGVRISSLDSPYW 208

                         170
                  ....*....|
gi 1853384859 166 AKRFDGIRRV 175
Cdd:COG0791   209 KSRYVGARRV 218
NLPC_P60 pfam00877
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 67-174 8.65e-39

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


Pssm-ID: 395705 [Multi-domain]  Cd Length: 105  Bit Score: 133.95  E-value: 8.65e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  67 GVPYRWGGNTPtSGFDCSGLVRYVIgRAADVNLPRTTADMSGRGVS-IDPDQIAPGDLIFFNTTGRPhSHVGIYVGKLRF 145
Cdd:pfam00877   1 GVPYRWGGGSP-SGFDCSGLVRYAF-AKVGIELPRSSGQQYNAGKKtIPKSEPQRGDLVFFGTGKGI-SHVGIYLGNGQM 77

                          90       100
                  ....*....|....*....|....*....
gi 1853384859 146 VNApSTGGTVRLDYLTNPYWAKRFDGIRR 174
Cdd:pfam00877  78 LHA-STGGGVSISSLNGGYWQKRLVGVRR 105
spr PRK10838
bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;
1-175 6.65e-25

bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;


Pssm-ID: 236773 [Multi-domain]  Cd Length: 190  Bit Score: 99.84  E-value: 6.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859   1 MLRICVPVAVVSLLAACSSLP----PQSASREPGMKittpRAFPAPAN---FPKFVDHSVGQEEISIQAMSLVGVPYRWG 73
Cdd:PRK10838   10 ILRGIPAIAVAVLLSACSANNtaknMHTETRAVGDS----DGSSLQASqdeFENMVRNVDVKSRIMDQYADWKGVRYRLG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  74 GNTpTSGFDCSGLVRYVIGRAADVNLPRTTADMSGRGVSIDPDQIAPGDLIFFNT--TGRphsHVGIYVGKLRFVNApST 151
Cdd:PRK10838   86 GST-KKGIDCSAFVQRTFREQFGLELPRSTYEQQEMGKSVSRSKLRTGDLVLFRAgsTGR---HVGIYIGNNQFVHA-ST 160

                         170       180
                  ....*....|....*....|....
gi 1853384859 152 GGTVRLDYLTNPYWAKRFDGIRRV 175
Cdd:PRK10838  161 SSGVIISSMNEPYWKKRYNEARRV 184
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
173-353 2.04e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.41  E-value: 2.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 173 RRVAPPRATPTPFDAPTYEA---KRDEPRNPPAVAPAPVMTATAPRPPAHASSQAGATQSPAPV---MPAARAVTTAAVA 246
Cdd:PRK12323  388 AAAAPAAAAPAPAAPPAAPAaapAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPApapAAAPAAAARPAAA 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 247 PAAASADPYEPPPPRVQAARQQATSANGDGGPTAMTANAAPAGPAEVGAQIPTTALTAAQAAAFDAEPPPAAAATASRDT 326
Cdd:PRK12323  468 GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

                         170       180
                  ....*....|....*....|....*..
gi 1853384859 327 DPAPVQVLRASTQSSPVSPRTGTADDP 353
Cdd:PRK12323  548 APAPRAAAATEPVVAPRPPRASASGLP 574
 
Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
6-175 7.06e-49

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 164.10  E-value: 7.06e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859   6 VPVAVVSLLAACSSLPPQSASREPGMKITTPRAFPAPANFPKFVDHSVGQEEISIQAMSLVGVPYRWGGNTPtSGFDCSG 85
Cdd:COG0791    51 LLAGPAAAVAGAAAPAVGSAGAAAAAAAAKAGSSAAKSAAGASAPPSSTAEAIVAAALSYLGTPYVWGGTSP-SGFDCSG 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  86 LVRYVIgRAADVNLPRTTADMSGRGVSIDPDQIAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYW 165
Cdd:COG0791   130 LVQYVY-RQAGISLPRTSADQAAAGTPVSRSELQPGDLVFFRTGGGGISHVGIYLGNGKFIHASSSGKGVRISSLDSPYW 208

                         170
                  ....*....|
gi 1853384859 166 AKRFDGIRRV 175
Cdd:COG0791   209 KSRYVGARRV 218
NLPC_P60 pfam00877
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 67-174 8.65e-39

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


Pssm-ID: 395705 [Multi-domain]  Cd Length: 105  Bit Score: 133.95  E-value: 8.65e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  67 GVPYRWGGNTPtSGFDCSGLVRYVIgRAADVNLPRTTADMSGRGVS-IDPDQIAPGDLIFFNTTGRPhSHVGIYVGKLRF 145
Cdd:pfam00877   1 GVPYRWGGGSP-SGFDCSGLVRYAF-AKVGIELPRSSGQQYNAGKKtIPKSEPQRGDLVFFGTGKGI-SHVGIYLGNGQM 77

                          90       100
                  ....*....|....*....|....*....
gi 1853384859 146 VNApSTGGTVRLDYLTNPYWAKRFDGIRR 174
Cdd:pfam00877  78 LHA-STGGGVSISSLNGGYWQKRLVGVRR 105
spr PRK10838
bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;
1-175 6.65e-25

bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;


Pssm-ID: 236773 [Multi-domain]  Cd Length: 190  Bit Score: 99.84  E-value: 6.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859   1 MLRICVPVAVVSLLAACSSLP----PQSASREPGMKittpRAFPAPAN---FPKFVDHSVGQEEISIQAMSLVGVPYRWG 73
Cdd:PRK10838   10 ILRGIPAIAVAVLLSACSANNtaknMHTETRAVGDS----DGSSLQASqdeFENMVRNVDVKSRIMDQYADWKGVRYRLG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  74 GNTpTSGFDCSGLVRYVIGRAADVNLPRTTADMSGRGVSIDPDQIAPGDLIFFNT--TGRphsHVGIYVGKLRFVNApST 151
Cdd:PRK10838   86 GST-KKGIDCSAFVQRTFREQFGLELPRSTYEQQEMGKSVSRSKLRTGDLVLFRAgsTGR---HVGIYIGNNQFVHA-ST 160

                         170       180
                  ....*....|....*....|....
gi 1853384859 152 GGTVRLDYLTNPYWAKRFDGIRRV 175
Cdd:PRK10838  161 SSGVIISSMNEPYWKKRYNEARRV 184
PRK13914 PRK13914
invasion associated endopeptidase;
61-175 1.64e-18

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 86.39  E-value: 1.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859  61 QAMSLVGVPYRWGGNTPTSgFDCSGLVRYVIGRAAdVNLPRTTADMSGRGVSIDPDQIAPGDLIFFNtTGRPHSHVGIYV 140
Cdd:PRK13914  372 EAQKHLGKAYSWGGNGPTT-FDCSGYTKYVFAKAG-ISLPRTSGAQYASTTRISESQAKPGDLVFFD-YGSGISHVGIYV 448

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1853384859 141 GKLRFVNAPSTGgtVRLDYLTNPYWAKRFDGIRRV 175
Cdd:PRK13914  449 GNGQMINAQDNG--VKYDNIHGSGWGKYLVGFGRV 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
173-353 2.04e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.41  E-value: 2.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 173 RRVAPPRATPTPFDAPTYEA---KRDEPRNPPAVAPAPVMTATAPRPPAHASSQAGATQSPAPV---MPAARAVTTAAVA 246
Cdd:PRK12323  388 AAAAPAAAAPAPAAPPAAPAaapAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPApapAAAPAAAARPAAA 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 247 PAAASADPYEPPPPRVQAARQQATSANGDGGPTAMTANAAPAGPAEVGAQIPTTALTAAQAAAFDAEPPPAAAATASRDT 326
Cdd:PRK12323  468 GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

                         170       180
                  ....*....|....*....|....*..
gi 1853384859 327 DPAPVQVLRASTQSSPVSPRTGTADDP 353
Cdd:PRK12323  548 APAPRAAAATEPVVAPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
176-356 5.87e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 5.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 176 APPRATPTPFDAPTYEAKRDEPRNP-PAVAPAPVMTATAPRPPAHASSQAGATQSPAPVMPAARAVTTAAVAPAAASADP 254
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPaPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 255 YEPPPPrVQAARQQATSAngdgGPTAMTANAAPAGPAEVGAQIPTTALTAAQAAAFDAEPPPAAAatasrDTDPAPVQVL 334
Cdd:PRK12323  453 APAAAP-AAAARPAAAGP----RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPA-----QPDAAPAGWV 522

                         170       180
                  ....*....|....*....|..
gi 1853384859 335 RASTqsspvsPRTGTADDPIAR 356
Cdd:PRK12323  523 AESI------PDPATADPDDAF 538
YycO COG3863
Uncharacterized conserved protein YycO, NlpC/P60 family [Function unknown];
108-182 9.83e-05

Uncharacterized conserved protein YycO, NlpC/P60 family [Function unknown];


Pssm-ID: 443072  Cd Length: 166  Bit Score: 42.29  E-value: 9.83e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1853384859 108 GRGVSIDPDQIAPGDLIFFNTTGR---PHSHVGIYVGKLRFVNAPSTGGTVRldylTNPYWAKRFDGIRRVAPPRATP 182
Cdd:COG3863    18 GNKANDDLAPLQPGDILLTKSPSTlsgNHGHAGIYIGDGQVVEAVGDGVRII----PLETWLDRYDTVAVLRVVKTSE 91
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 173-298 2.89e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 2.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 173 RRVAPPRATPTPFDAPTYEAKRDEPRNPPAVAPAPvmtATAPRPPAHASSQAGATQSPAPVMPAARAVTTAAVAPAAASA 252
Cdd:PRK07764  384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPA---AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1853384859 253 DPYEPPPPRVQAArQQATSANGDGGPTAMTANAAPAGPAEVGAQIP 298
Cdd:PRK07764  461 APSAQPAPAPAAA-PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
173-292 2.69e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.83  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 173 RRVAPPRATPTPFDAPTYEAKRDEPRNPPAVAPAPVMTATAPRPPAHASSQAGATQSPAPVMPAARAVTTAAVAPAAASA 252
Cdd:PRK07003  408 AALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPD 487

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1853384859 253 DPYEPPPPRVQAARQQATSANGDGGPTAMTANAAPAGPAE 292
Cdd:PRK07003  488 AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAP 527
PHA03378 PHA03378
EBNA-3B; Provisional
 174-293 3.75e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.28  E-value: 3.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 174 RVAPPRATPTPFDAPTYE-AKRDEPRNPPAVAPAPVMTATAPRPPAHASSQAGATQSPAPVMPAARAVTTAAVAPAAASA 252
Cdd:PHA03378  693 TMQPPPRAPTPMRPPAAPpGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 772

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1853384859 253 DPYEPPPPRVQAARQQATSangdGGPTAMTANAAPAGPAEV 293
Cdd:PHA03378  773 APTPQPPPQAPPAPQQRPR----GAPTPQPPPQAGPTSMQL 809
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
171-356 5.03e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.06  E-value: 5.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 171 GIRRVAPPRATPTPFDAPTYEAkrdEPRNPPAVAPAPVMTATAPRPPAHAssQAGATQSPAPVMPAARAVTTAAVAPAAA 250
Cdd:PRK07003  370 GGVPARVAGAVPAPGARAAAAV---GASAVPAVTAVTGAAGAALAPKAAA--AAAATRAEAPPAAPAPPATADRGDDAAD 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 251 SADPYEPPPPRVQAARQQATSAnGDGGPTAMTANAAPAGPAEVGAQI-PTTALTAAQAAAFDAEPPPAAAATASRDTDPA 329
Cdd:PRK07003  445 GDAPVPAKANARASADSRCDER-DAQPPADSGSASAPASDAPPDAAFePAPRAAAPSAATPAAVPDARAPAAASREDAPA 523

                         170       180
                  ....*....|....*....|....*..
gi 1853384859 330 PvqvlrASTQSSPVSPRTGTADDPIAR 356
Cdd:PRK07003  524 A-----AAPPAPEARPPTPAAAAPAAR 545
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 200-331 8.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.16  E-value: 8.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 200 PPAVAPAPVMTATAPRPPAHASSQAGATQSPAPVMPAARAVTTAAVAPAAASADPyePPPPRVQAARQQATSANGDGGPT 279
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA--APPAPVAAPAAAAPAAAPAAAPA 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1853384859 280 AMTAN-AAPAGPAEVGAQIPTTALTAAQAAAFDAEPPPAAAATASRDTDPAPV 331
Cdd:PRK14951  444 AVALApAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 176-293 8.20e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.16  E-value: 8.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 176 APPRATPTPFDAPTYEAKRDEPRNPPAVAPAPVMTATAPRPPAhASSQAGATQSPAPVMPAARAVTTAAVAPAAASADPY 255
Cdd:PRK14951  372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA 450

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1853384859 256 EPPPPRVQAARQQATSANGDGGPTAMTANAAPAGPAEV 293
Cdd:PRK14951  451 PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 177-355 8.67e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.04  E-value: 8.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 177 PPRATPTPFDAPTYEAKRDEPRNPPAVAPAPVMTATAPRPPAHASSQAGATQSPAPVMPAARAVTTAAVAPAAASADPYE 256
Cdd:PRK07764  608 PPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1853384859 257 PPPPRVQAARQQATSANGDGGPTAMTAnAAPAGPAEVGAQIPTTALTAAQAAAFDAEPPPAAAATASRDTDPAPVQVLRA 336
Cdd:PRK07764  688 AAPAAPAGAAPAQPAPAPAATPPAGQA-DDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

                         170
                  ....*....|....*....
gi 1853384859 337 STQSSPVSPRTGTADDPIA 355
Cdd:PRK07764  767 AAAPAAAPPPSPPSEEEEM 785
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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