NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1867115719|ref|WP_178318391|]
View 

MULTISPECIES: YkvA family protein [Acinetobacter]

Protein Classification

YkvA family protein( domain architecture ID 10007237)

YkvA family protein is a DUF1232 domain-containing protein, similar to Bacillus subtilis membrane protein YkvA

Gene Ontology:  GO:0016020

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YkvA COG3339
Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];
3-94 5.57e-22

Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];


:

Pssm-ID: 442568  Cd Length: 104  Bit Score: 83.47  E-value: 5.57e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867115719   3 WIDRLKQWAKQIK--RNVYAVWFVARDPETPFMAKLLALLVAAYAISPIDLIPDFIPVLGYLDDLILVPLGIMLVLRLVP 80
Cdd:COG3339     7 WDGKLKKLARRLPflRRLLLLYYAGRDPRVPWKAKLLIAAALAYFVSPIDLIPDFIPVLGYLDDLAVLALALALVIKEIP 86

                          90
                  ....*....|....
gi 1867115719  81 AEVMQRCRLQADAI 94
Cdd:COG3339    87 PEVREEAWEGAEDL 100
 
Name Accession Description Interval E-value
YkvA COG3339
Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];
3-94 5.57e-22

Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];


Pssm-ID: 442568  Cd Length: 104  Bit Score: 83.47  E-value: 5.57e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867115719   3 WIDRLKQWAKQIK--RNVYAVWFVARDPETPFMAKLLALLVAAYAISPIDLIPDFIPVLGYLDDLILVPLGIMLVLRLVP 80
Cdd:COG3339     7 WDGKLKKLARRLPflRRLLLLYYAGRDPRVPWKAKLLIAAALAYFVSPIDLIPDFIPVLGYLDDLAVLALALALVIKEIP 86

                          90
                  ....*....|....
gi 1867115719  81 AEVMQRCRLQADAI 94
Cdd:COG3339    87 PEVREEAWEGAEDL 100
DUF1232 pfam06803
Protein of unknown function (DUF1232); This family represents a conserved region of ...
 46-70 5.37e-08

Protein of unknown function (DUF1232); This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462011  Cd Length: 36  Bit Score: 45.79  E-value: 5.37e-08
                          10        20
                  ....*....|....*....|....*
gi 1867115719  46 ISPIDLIPDFIPVLGYLDDLILVPL 70
Cdd:pfam06803  12 ISPIDLIPDFIPVLGYLDDLAVLAL 36
 
Name Accession Description Interval E-value
YkvA COG3339
Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];
3-94 5.57e-22

Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];


Pssm-ID: 442568  Cd Length: 104  Bit Score: 83.47  E-value: 5.57e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867115719   3 WIDRLKQWAKQIK--RNVYAVWFVARDPETPFMAKLLALLVAAYAISPIDLIPDFIPVLGYLDDLILVPLGIMLVLRLVP 80
Cdd:COG3339     7 WDGKLKKLARRLPflRRLLLLYYAGRDPRVPWKAKLLIAAALAYFVSPIDLIPDFIPVLGYLDDLAVLALALALVIKEIP 86

                          90
                  ....*....|....
gi 1867115719  81 AEVMQRCRLQADAI 94
Cdd:COG3339    87 PEVREEAWEGAEDL 100
DUF1232 pfam06803
Protein of unknown function (DUF1232); This family represents a conserved region of ...
 46-70 5.37e-08

Protein of unknown function (DUF1232); This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462011  Cd Length: 36  Bit Score: 45.79  E-value: 5.37e-08
                          10        20
                  ....*....|....*....|....*
gi 1867115719  46 ISPIDLIPDFIPVLGYLDDLILVPL 70
Cdd:pfam06803  12 ISPIDLIPDFIPVLGYLDDLAVLAL 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH