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Conserved domains on  [gi|1869622417|ref|WP_179507273|]
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DUF1272 domain-containing protein [Sphingomonas melonis]

Protein Classification

DUF1272 domain-containing protein( domain architecture ID 10536460)

DUF1272 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1272 super family cl19740
Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial ...
 1-72 5.24e-29

Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.


The actual alignment was detected with superfamily member COG3813:

Pssm-ID: 473200  Cd Length: 83  Bit Score: 98.43  E-value: 5.24e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1869622417  1 MLAMHPDCERCGADLPADAPGAFICSLETTFCSECADE-LDERCPDCGGELLDRPTRIGKALKAHPPVTERRF 72
Cdd:COG3813    1 MLELRPNCECCDKDLPPDSPDARICSFECTFCADCAETvLDNVCPNCGGGLVPRPIRPAAALAKYPASTKRVH 73
 
Name Accession Description Interval E-value
COG3813 COG3813
Uncharacterized conserved protein, DUF1272 domain [Function unknown];
1-72 5.24e-29

Uncharacterized conserved protein, DUF1272 domain [Function unknown];


Pssm-ID: 443025  Cd Length: 83  Bit Score: 98.43  E-value: 5.24e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1869622417  1 MLAMHPDCERCGADLPADAPGAFICSLETTFCSECADE-LDERCPDCGGELLDRPTRIGKALKAHPPVTERRF 72
Cdd:COG3813    1 MLELRPNCECCDKDLPPDSPDARICSFECTFCADCAETvLDNVCPNCGGGLVPRPIRPAAALAKYPASTKRVH 73
DUF1272 pfam06906
Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial ...
 1-56 5.11e-19

Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.


Pssm-ID: 429185  Cd Length: 57  Bit Score: 72.28  E-value: 5.11e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1869622417  1 MLAMHPDCERCGADLPADAPGAFICSLETTFCSECADE-LDERCPDCGGELLDRPTR 56
Cdd:pfam06906  1 MLELRPNCECCDRDLPPDSPDARICSYECTFCADCAEArLHNVCPNCGGELVPRPRR 57
 
Name Accession Description Interval E-value
COG3813 COG3813
Uncharacterized conserved protein, DUF1272 domain [Function unknown];
1-72 5.24e-29

Uncharacterized conserved protein, DUF1272 domain [Function unknown];


Pssm-ID: 443025  Cd Length: 83  Bit Score: 98.43  E-value: 5.24e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1869622417  1 MLAMHPDCERCGADLPADAPGAFICSLETTFCSECADE-LDERCPDCGGELLDRPTRIGKALKAHPPVTERRF 72
Cdd:COG3813    1 MLELRPNCECCDKDLPPDSPDARICSFECTFCADCAETvLDNVCPNCGGGLVPRPIRPAAALAKYPASTKRVH 73
DUF1272 pfam06906
Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial ...
 1-56 5.11e-19

Protein of unknown function (DUF1272); This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.


Pssm-ID: 429185  Cd Length: 57  Bit Score: 72.28  E-value: 5.11e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1869622417  1 MLAMHPDCERCGADLPADAPGAFICSLETTFCSECADE-LDERCPDCGGELLDRPTR 56
Cdd:pfam06906  1 MLELRPNCECCDRDLPPDSPDARICSYECTFCADCAEArLHNVCPNCGGELVPRPRR 57
YrdD COG0551
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ...
 36-59 5.14e-03

DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];


Pssm-ID: 440317 [Multi-domain]  Cd Length: 695  Bit Score: 33.69  E-value: 5.14e-03
                          10        20
                  ....*....|....*....|....
gi 1869622417  36 ADELDERCPDCGGELLDRPTRIGK 59
Cdd:COG0551   582 DEVLGEKCPKCGKPLVIKKGRYGK 605
YrdD COG0551
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ...
 8-59 5.56e-03

DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];


Pssm-ID: 440317 [Multi-domain]  Cd Length: 695  Bit Score: 33.69  E-value: 5.56e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1869622417   8 CERCGADLpad--apGAFICslettfCS---EC--------ADELDERCPDCGGELLDRPTRIGK 59
Cdd:COG0551   589 CPKCGKPLvikkgryGKFLG------CSnypECkytkplpkPEVTGVKCPKCGKKLVLRKSKKGK 647
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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