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Conserved domains on  [gi|1877962790|ref|WP_180490098|]
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MJ0042-type zinc finger domain-containing protein, partial [Escherichia fergusonii]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 28291)

zinc ribbon domain-containing protein may contain a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_4 super family cl11777
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-38 1.69e-10

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR, pfam12773.


The actual alignment was detected with superfamily member TIGR02098:

Pssm-ID: 448344  Cd Length: 38  Bit Score: 49.67  E-value: 1.69e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1877962790  1 MHIVCPHCTTSYAVDPANFSAAGRRVRCARCQEVWLAV 38
Cdd:TIGR02098  1 MRIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38
 
Name Accession Description Interval E-value
MJ0042_CXXC TIGR02098
MJ0042 family finger-like domain; This domain contains a CXXCX(19)CXXC motif suggestive of ...
 1-38 1.69e-10

MJ0042 family finger-like domain; This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.


Pssm-ID: 131153  Cd Length: 38  Bit Score: 49.67  E-value: 1.69e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1877962790  1 MHIVCPHCTTSYAVDPANFSAAGRRVRCARCQEVWLAV 38
Cdd:TIGR02098  1 MRIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38
zinc_ribbon_4 pfam13717
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-35 2.40e-10

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR, pfam12773.


Pssm-ID: 433426 [Multi-domain]  Cd Length: 36  Bit Score: 49.13  E-value: 2.40e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1877962790  1 MHIVCPHCTTSYAVDPANFSAAGRRVRCARCQEVW 35
Cdd:pfam13717  1 MIITCPSCKAKYRIDDEKIPASGVKVRCSKCGHVF 35
 
Name Accession Description Interval E-value
MJ0042_CXXC TIGR02098
MJ0042 family finger-like domain; This domain contains a CXXCX(19)CXXC motif suggestive of ...
 1-38 1.69e-10

MJ0042 family finger-like domain; This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.


Pssm-ID: 131153  Cd Length: 38  Bit Score: 49.67  E-value: 1.69e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1877962790  1 MHIVCPHCTTSYAVDPANFSAAGRRVRCARCQEVWLAV 38
Cdd:TIGR02098  1 MRIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38
zinc_ribbon_4 pfam13717
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-35 2.40e-10

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR, pfam12773.


Pssm-ID: 433426 [Multi-domain]  Cd Length: 36  Bit Score: 49.13  E-value: 2.40e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1877962790  1 MHIVCPHCTTSYAVDPANFSAAGRRVRCARCQEVW 35
Cdd:pfam13717  1 MIITCPSCKAKYRIDDEKIPASGVKVRCSKCGHVF 35
zinc_ribbon_5 pfam13719
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-37 3.67e-04

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR, pfam12773.


Pssm-ID: 316258  Cd Length: 37  Bit Score: 33.76  E-value: 3.67e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 1877962790  1 MHIVCPHCTTSYAVDPANFSAAGRRVRCARCQEVWLA 37
Cdd:pfam13719  1 LIIRCPACGTMFKLVTSQLKVSGGKVRCAKCAEVFDA 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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