|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10747 |
PRK10747 |
putative protoheme IX biogenesis protein; Provisional |
12-397 |
0e+00 |
|
putative protoheme IX biogenesis protein; Provisional
Pssm-ID: 182695 [Multi-domain] Cd Length: 398 Bit Score: 744.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 12 IAGVVIGPIVAGHQGYVLIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKAA 91
Cdd:PRK10747 12 IAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 92 LLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPVDITRVRIQLARNEDHA 171
Cdd:PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 172 ARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQAMADGGSEGLKSW 251
Cdd:PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 252 WNNQSRKVRHEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLMPRLKAGNPEQLEKLLRQYIKQQASTALLS 331
Cdd:PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW 331
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1878687131 332 STLGQLLMKHGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREGLLLTLQQPAD 397
Cdd:PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNPP 397
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
21-387 |
9.74e-117 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 344.27 E-value: 9.74e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 21 VAGHQGYVLIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKAALLKLAEGDY 100
Cdd:TIGR00540 2 LAGNTGYVLIVYPPYRIELSLNFFVLLLVLLFVVLYILLRLIRRVFRLPRRVRAWRSRRKQRRAQQATREGLIALFEGRY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 101 LQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPVDITRVRIQLARNEDHAARHGVDKLL 180
Cdd:TIGR00540 82 SQAEKKATKAAEHSENPLLAYLLAARAAQQMGDEERRDRYLAEAAELAPNSELAVLLTRAELLLDQRDYEAALAALDSLQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 181 EVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQAmADGGSEGLKSWWNNQSRKVR 260
Cdd:TIGR00540 162 AQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAKALSPEEAARLEQQAYIGLLDEA-REEDADALKTWWKQLPRAER 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 261 HEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLMPRLKAGNPEQLEKLLRQYIKQQASTALLSSTLGQLLMK 340
Cdd:TIGR00540 241 QEPELAVAAAEALIQLGDHDEAEKLIEEALKKEWDPELLRLYGRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLR 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1878687131 341 HGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREG 387
Cdd:TIGR00540 321 QQLWGKAQSYLEASLSLAPTEEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
87-392 |
2.60e-89 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 272.55 E-value: 2.60e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 87 QTKAALLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPVDITRVRIQLAR 166
Cdd:COG3071 19 ALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 167 NEDHAARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQAMADggSE 246
Cdd:COG3071 99 GQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQAARD--AE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 247 GLKSWWNNQSRKVRHEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLMPRLKAGNPEQLEKLLRQYIKQQAS 326
Cdd:COG3071 177 ALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPN 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1878687131 327 TALLSSTLGQLLMKHGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREGLLLTL 392
Cdd:COG3071 257 DPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| HemY_N |
pfam07219 |
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of ... |
29-132 |
7.39e-32 |
|
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Pssm-ID: 429353 [Multi-domain] Cd Length: 104 Bit Score: 116.46 E-value: 7.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 29 LIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKAALLKLAEGDYLQVEKLLT 108
Cdd:pfam07219 1 LIVWGGYRIETSLWVAVLLLVLLFVLLYLLLRLLRLLLRLPGRVRRWRRRRRRRKARKALSEGLIALAEGDWAQAEKLAA 80
|
90 100
....*....|....*....|....
gi 1878687131 109 RNADHAEQPVVNYLLAAEAAQQRG 132
Cdd:pfam07219 81 KAAKLLDAPLLNYLLAARAAQLQG 104
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
308-361 |
3.69e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.15 E-value: 3.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1878687131 308 GNPEQLEKLLRQYIKQQASTALLSSTLGQLLMKHGEWQKASDAFRTALELRPDA 361
Cdd:cd24142 14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10747 |
PRK10747 |
putative protoheme IX biogenesis protein; Provisional |
12-397 |
0e+00 |
|
putative protoheme IX biogenesis protein; Provisional
Pssm-ID: 182695 [Multi-domain] Cd Length: 398 Bit Score: 744.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 12 IAGVVIGPIVAGHQGYVLIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKAA 91
Cdd:PRK10747 12 IAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 92 LLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPVDITRVRIQLARNEDHA 171
Cdd:PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 172 ARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQAMADGGSEGLKSW 251
Cdd:PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 252 WNNQSRKVRHEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLMPRLKAGNPEQLEKLLRQYIKQQASTALLS 331
Cdd:PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW 331
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1878687131 332 STLGQLLMKHGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREGLLLTLQQPAD 397
Cdd:PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNPP 397
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
21-387 |
9.74e-117 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 344.27 E-value: 9.74e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 21 VAGHQGYVLIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKAALLKLAEGDY 100
Cdd:TIGR00540 2 LAGNTGYVLIVYPPYRIELSLNFFVLLLVLLFVVLYILLRLIRRVFRLPRRVRAWRSRRKQRRAQQATREGLIALFEGRY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 101 LQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPVDITRVRIQLARNEDHAARHGVDKLL 180
Cdd:TIGR00540 82 SQAEKKATKAAEHSENPLLAYLLAARAAQQMGDEERRDRYLAEAAELAPNSELAVLLTRAELLLDQRDYEAALAALDSLQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 181 EVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQAmADGGSEGLKSWWNNQSRKVR 260
Cdd:TIGR00540 162 AQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAKALSPEEAARLEQQAYIGLLDEA-REEDADALKTWWKQLPRAER 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 261 HEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLMPRLKAGNPEQLEKLLRQYIKQQASTALLSSTLGQLLMK 340
Cdd:TIGR00540 241 QEPELAVAAAEALIQLGDHDEAEKLIEEALKKEWDPELLRLYGRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLR 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1878687131 341 HGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREG 387
Cdd:TIGR00540 321 QQLWGKAQSYLEASLSLAPTEEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
87-392 |
2.60e-89 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 272.55 E-value: 2.60e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 87 QTKAALLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPVDITRVRIQLAR 166
Cdd:COG3071 19 ALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 167 NEDHAARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQAMADggSE 246
Cdd:COG3071 99 GQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQAARD--AE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 247 GLKSWWNNQSRKVRHEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLMPRLKAGNPEQLEKLLRQYIKQQAS 326
Cdd:COG3071 177 ALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPN 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1878687131 327 TALLSSTLGQLLMKHGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREGLLLTL 392
Cdd:COG3071 257 DPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| HemY_N |
pfam07219 |
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of ... |
29-132 |
7.39e-32 |
|
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Pssm-ID: 429353 [Multi-domain] Cd Length: 104 Bit Score: 116.46 E-value: 7.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 29 LIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKAALLKLAEGDYLQVEKLLT 108
Cdd:pfam07219 1 LIVWGGYRIETSLWVAVLLLVLLFVLLYLLLRLLRLLLRLPGRVRRWRRRRRRRKARKALSEGLIALAEGDWAQAEKLAA 80
|
90 100
....*....|....*....|....
gi 1878687131 109 RNADHAEQPVVNYLLAAEAAQQRG 132
Cdd:pfam07219 81 KAAKLLDAPLLNYLLAARAAQLQG 104
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
12-215 |
6.42e-10 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 60.68 E-value: 6.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 12 IAGVVIGPI-VAGHQGYVLIQTDNYDIQTSVTGLVIMLVLFFLAFLAVEWVLRRIFRTGSRTRGWFLGRKRTRARKQTKA 90
Cdd:COG3898 11 VAALALGAAwLADRPGTVSITWLGYEIETSLLVAAIALLVLAAAVWLLWRLLRFLLGSPTALSRYFRRRRRRKGYQALSR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 91 ALLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADTDQLPvditrVR---IQ-LAR 166
Cdd:COG3898 91 GLIAVAAGDGRLARRKAAKAERLLDRPPLTLLLEAQAAQLAGDREAARRAFEAMLEDPETRFLG-----LRglmVEaLRR 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1878687131 167 NEDHAARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILPAMRK 215
Cdd:COG3898 166 GDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALK 214
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
161-365 |
4.26e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.75 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 161 RIQLARNEDHAARHGVDKLLEVAPRHPEVLRLAEQAFLR-THAYSALLDILPAMRKINLYPEERLLDLQQQAYIGLMNQA 239
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLlAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 240 MADGGSEGLKSWWNNQSRKVRHEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDE---RLILLMPRLKAGNPEQLEKL 316
Cdd:COG3914 89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFaeaYLNLGEALRRLGRLEEAIAA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1878687131 317 LRQYIKQQASTALLSSTLGQLLMKHGEWQKASDAFRTALELRPDAYDYA 365
Cdd:COG3914 169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
266-390 |
6.81e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 6.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 266 QVAMAEHLIECDEHDTAQKIILDGLKRQYDERLILLM---PRLKAGNPEQLEKLLRQYIKQQASTALLSSTLGQLLMKHG 342
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALlgeILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1878687131 343 EWQKASDAFRTALELRPDAYDYAWR-ADALDRLRLPDEAAQMRREGLLL 390
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRlARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
90-388 |
9.65e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 9.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 90 AALLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEvADTDQLPVDITRVRIQLARNED 169
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 170 HAARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILpamrkinlypeERLLDLQQ---QAYIGLMNQAMADGGSE 246
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL-----------ERLLKLGPenaHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 247 GLKSWWNNQSRKVRHEIPLQVAMAEHLiecdehdtaqkiildglkrqyderlillmprLKAGNPEQLEKLLRQYIKQQAS 326
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELY-------------------------------LEQGDYEEAIAALERALEQDPD 210
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1878687131 327 TALLSSTLGQLLMKHGEWQKASDAFRTALELRPDAYDYAWRADALDRLRLPDEAAQMRREGL 388
Cdd:COG2956 211 YLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
136-360 |
2.58e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 136 RTKQYLERAAEVADTDQLPVDITRV--RIQLARNEDHAARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILpam 213
Cdd:TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMlgRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL--- 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 214 rKINLYPEERLLDLQqqayIGLMNQAMADGG-SEGLKSWWNNQSRKVRHEIPLQVAMAEHLIECDEHDTAQKIiLDGLKR 292
Cdd:TIGR02917 659 -KRALELKPDNTEAQ----IGLAQLLLAAKRtESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY-RKALKR 732
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 293 QYDERLILLMPR--LKAGNPEQLEKLLRQYIKQQASTALLSSTLGQLLMKHGEWQKASDAFRTALELRPD 360
Cdd:TIGR02917 733 APSSQNAIKLHRalLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
104-361 |
2.74e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 104 EKLLTRNADHAEQpvvnYLLAAEAAQQRGDEFRTKQYLERAAEVaDTDQLPVDITRVRIQLARNEDHAARHGVDKLLEVA 183
Cdd:TIGR02917 625 KKLLALQPDSALA----LLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 184 PRHPEVLRLAEQAFLRTHAYSAlldILPAMRK-INLYPEERLLDLQQQAYIGLMNQAMADggsEGLKSWWNNQSRkvrhE 262
Cdd:TIGR02917 700 PKAALGFELEGDLYLRQKDYPA---AIQAYRKaLKRAPSSQNAIKLHRALLASGNTAEAV---KTLEAWLKTHPN----D 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 263 IPLQVAMAEHLIECDEHDTAQKIILDGLKRQYDERLIL---LMPRLKAGNPEQLEKLLRQYiKQQASTALLSSTLGQLLM 339
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLnnlAWLYLELKDPRALEYAERAL-KLAPNIPAILDTLGWLLV 848
|
250 260
....*....|....*....|..
gi 1878687131 340 KHGEWQKASDAFRTALELRPDA 361
Cdd:TIGR02917 849 EKGEADRALPLLRKAVNIAPEA 870
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
308-361 |
3.69e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.15 E-value: 3.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1878687131 308 GNPEQLEKLLRQYIKQQASTALLSSTLGQLLMKHGEWQKASDAFRTALELRPDA 361
Cdd:cd24142 14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
77-293 |
6.35e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 38.17 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 77 LGRKRTRARKQTKAALLKLAEGDYLQVEKLLTRNADHAEQPVVNYLLAAEAAQQRGDEFRTKQYLERAAEVADtDQLPVD 156
Cdd:COG2956 69 LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP-ENAHAY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 157 ITRVRIQLARNEDHAARHGVDKLLEVAPRHPEVLRLAEQAFLRTHAYSALLDILpaMRKINLYPEerlldlQQQAYIGLM 236
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL--ERALEQDPD------YLPALPRLA 219
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1878687131 237 NQAMADGGSEGLKSWWNNQSRKvRHEIPLQVAMAEHLIECDEHDTAQKIILDGLKRQ 293
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALEL-DPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
305-386 |
6.75e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 305 LKAGNPEQLEKLLRQYIKQQASTALLSST---LGQLLMKHGEWQKASDAFRTALELRPDAYDYA----WRADALDRLRLP 377
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdallKLGLSYLELGDY 83
|
....*....
gi 1878687131 378 DEAAQMRRE 386
Cdd:COG1729 84 DKARATLEE 92
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
312-390 |
6.96e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.52 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878687131 312 QLEKLLRQYIKQQASTALLSSTLGQLLMKHGEWQKASDAFRTALELRPD-AYDYAWRADALDRLRLPDEAAQMRREGLLL 390
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| |
