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Conserved domains on  [gi|1888886719|ref|WP_182491767|]
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30S ribosomal protein S17 [Microcella alkalica]

Protein Classification

small ribosomal subunit protein uS17( domain architecture ID 10000695)

small ribosomal subunit protein uS17, also called 30S ribosomal protein S17 in bacteria, is one of the primary rRNA binding proteins; it binds specifically to the 5'-end of 16S ribosomal RNA and plays a role in translational accuracy

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
21-105 3.80e-46

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439956  Cd Length: 87  Bit Score: 142.95  E-value: 3.80e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  21 ESARGYRKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEI 100
Cdd:COG0186     2 SEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEI 81

                  ....*
gi 1888886719 101 LEKAK 105
Cdd:COG0186    82 VEKAK 86
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
21-105 3.80e-46

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 142.95  E-value: 3.80e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  21 ESARGYRKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEI 100
Cdd:COG0186     2 SEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEI 81

                  ....*
gi 1888886719 101 LEKAK 105
Cdd:COG0186    82 VEKAK 86
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
23-105 3.92e-44

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 137.98  E-value: 3.92e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  23 ARGYRKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEILE 102
Cdd:PRK05610    2 ERMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIVE 81

                  ...
gi 1888886719 103 KAK 105
Cdd:PRK05610   82 KAV 84
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
28-100 2.72e-36

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 117.91  E-value: 2.72e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1888886719  28 KVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEI 100
Cdd:cd00364     1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVRIGECRPLSKTKRWVVVEI 73
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
27-98 1.17e-35

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 116.10  E-value: 1.17e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1888886719  27 RKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLV 98
Cdd:TIGR03635   1 RKTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNECKVGDVVRIIETRPLSKTKRWRLV 72
Ribosomal_S17 pfam00366
Ribosomal protein S17;
32-99 2.41e-34

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 112.48  E-value: 2.41e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1888886719  32 GYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVE 99
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRIGECRPLSKTKRWVVVE 68
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
21-105 3.80e-46

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 142.95  E-value: 3.80e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  21 ESARGYRKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEI 100
Cdd:COG0186     2 SEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEI 81

                  ....*
gi 1888886719 101 LEKAK 105
Cdd:COG0186    82 VEKAK 86
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
23-105 3.92e-44

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 137.98  E-value: 3.92e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  23 ARGYRKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEILE 102
Cdd:PRK05610    2 ERMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIVE 81

                  ...
gi 1888886719 103 KAK 105
Cdd:PRK05610   82 KAV 84
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
28-100 2.72e-36

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 117.91  E-value: 2.72e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1888886719  28 KVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEI 100
Cdd:cd00364     1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVRIGECRPLSKTKRWVVVEI 73
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
27-98 1.17e-35

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 116.10  E-value: 1.17e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1888886719  27 RKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLV 98
Cdd:TIGR03635   1 RKTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNECKVGDVVRIIETRPLSKTKRWRLV 72
Ribosomal_S17 pfam00366
Ribosomal protein S17;
32-99 2.41e-34

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 112.48  E-value: 2.41e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1888886719  32 GYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVE 99
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRIGECRPLSKTKRWVVVE 68
rps17 CHL00142
ribosomal protein S17; Validated
26-104 8.84e-34

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 111.68  E-value: 8.84e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1888886719  26 YRKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQNDAGIGDLVLIAETRPLSATKRWRLVEILEKA 104
Cdd:CHL00142    2 PVKEKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHDEENECNIGDQVLIEETRPLSKTKRWILKEILSKS 80
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
22-104 4.81e-17

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 69.94  E-value: 4.81e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  22 SARGyrKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHD-EQNDAGIGDLVLIAETRPLSATKRWRLVEI 100
Cdd:PRK08572   26 PVRG--QVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNpPCIDAKVGDKVKIAECRPLSKTKSFVVVEK 103

                  ....
gi 1888886719 101 LEKA 104
Cdd:PRK08572  104 KERA 107
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
19-103 2.25e-04

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 38.14  E-value: 2.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1888886719  19 RDESARGyrKVRRGYVTSDKMEKTIVVEVEDRVKHPLYGKVIRRTSKVKAHDEQN-DAGIGDLVLIAETRPLSATKRWRL 97
Cdd:PTZ00241   62 GNVSIRG--RILRGVVISTKMKRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCfDVKEGDIVVVGQCRPLSKTVRFNV 139

                  ....*.
gi 1888886719  98 VEILEK 103
Cdd:PTZ00241  140 LKVEKN 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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