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Conserved domains on  [gi|1889614193|ref|WP_182716866|]
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efflux RND transporter permease subunit [Pseudoalteromonas sp. SG45-2]

Protein Classification

efflux RND transporter permease subunit( domain architecture ID 11436314)

efflux RND transporter permease subunit similar to Bacillus subtilis swarming motility protein SwrC, which is required for self-resistance to surfactin, an antimicrobial lipopeptide surfactant produced by B. subtilis

PubMed:  19026770|10941792
TCDB:  2.A.6

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
AcrB COG0841
Multidrug efflux pump subunit AcrB [Defense mechanisms];
1-1043 0e+00

Multidrug efflux pump subunit AcrB [Defense mechanisms];


:

Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 1093.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    1 MKFSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYM 80
Cdd:COG0841      1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   81 FSQgTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPekTHDTAYLSNYA 160
Cdd:COG0841     81 TST-SSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSD--DLDELELSDYA 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  161 DLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQpisndsQFQILLNVK 240
Cdd:COG0841    158 ERNIKDRLERVPGVGQVQIFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGG------DREYTVRTN 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  241 GRLNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNF 320
Cdd:COG0841    232 GRLKTPEEFENIVIRTND-GSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASL 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  321 PTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFG 400
Cdd:COG0841    311 PEGVELTIVYDQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFA 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  401 LVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITIST 480
Cdd:COG0841    391 LVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIAL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  481 IISAFNSLTLSPALAALLLKSHDAKPDaftrllnklfgRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGG 560
Cdd:COG0841    471 LISLFVALTLTPALCARLLKPHPKGKK-----------GRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLAL 539
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  561 TIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSvnGFTNSPNSGIVFTPL 640
Cdd:COG0841    540 SVLLFGRLPTEFFPEEDQGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFS--GGGSGSNSGTIFVTL 617
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  641 ESFDKRTdpsQSAMAIAAQLNKRFAAIDEAFVAVFPPPPiQGLGTTGGFKLQIEDRankGFEALFNSLQAVIGKAQQDPA 720
Cdd:COG0841    618 KPWDERD---RSADEIIARLREKLAKIPGARVFVFQPPA-GGLGSGAPIEVQLQGD---DLEELAAAAEKLLAALRQIPG 690
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  721 LMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLKVR 800
Cdd:COG0841    691 LVDVRSDLQLGKPELQLDIDREKAAALGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVR 770
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  801 NRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLAD-TLPTGIEYEWTEVTYQQVLAG 879
Cdd:COG0841    771 TPDGEMVPLSSVATIEEGTGPSSINRYNGQRSVTVSANLAPGVSLGEALAAIEELAAElKLPPGVSIEFTGQAEEEQESF 850
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  880 NTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAK 959
Cdd:COG0841    851 SSLGLAFLLALLLVYLVLAAQFESFIQPLIILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFAN 930
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  960 DRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLVTN 1039
Cdd:COG0841    931 QLREEGMSLREAILEAARLRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDR 1010

                   ....
gi 1889614193 1040 KKEK 1043
Cdd:COG0841   1011 LRRR 1014
 
Name Accession Description Interval E-value
AcrB COG0841
Multidrug efflux pump subunit AcrB [Defense mechanisms];
1-1043 0e+00

Multidrug efflux pump subunit AcrB [Defense mechanisms];


Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 1093.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    1 MKFSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYM 80
Cdd:COG0841      1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   81 FSQgTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPekTHDTAYLSNYA 160
Cdd:COG0841     81 TST-SSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSD--DLDELELSDYA 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  161 DLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQpisndsQFQILLNVK 240
Cdd:COG0841    158 ERNIKDRLERVPGVGQVQIFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGG------DREYTVRTN 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  241 GRLNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNF 320
Cdd:COG0841    232 GRLKTPEEFENIVIRTND-GSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASL 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  321 PTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFG 400
Cdd:COG0841    311 PEGVELTIVYDQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFA 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  401 LVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITIST 480
Cdd:COG0841    391 LVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIAL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  481 IISAFNSLTLSPALAALLLKSHDAKPDaftrllnklfgRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGG 560
Cdd:COG0841    471 LISLFVALTLTPALCARLLKPHPKGKK-----------GRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLAL 539
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  561 TIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSvnGFTNSPNSGIVFTPL 640
Cdd:COG0841    540 SVLLFGRLPTEFFPEEDQGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFS--GGGSGSNSGTIFVTL 617
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  641 ESFDKRTdpsQSAMAIAAQLNKRFAAIDEAFVAVFPPPPiQGLGTTGGFKLQIEDRankGFEALFNSLQAVIGKAQQDPA 720
Cdd:COG0841    618 KPWDERD---RSADEIIARLREKLAKIPGARVFVFQPPA-GGLGSGAPIEVQLQGD---DLEELAAAAEKLLAALRQIPG 690
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  721 LMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLKVR 800
Cdd:COG0841    691 LVDVRSDLQLGKPELQLDIDREKAAALGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVR 770
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  801 NRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLAD-TLPTGIEYEWTEVTYQQVLAG 879
Cdd:COG0841    771 TPDGEMVPLSSVATIEEGTGPSSINRYNGQRSVTVSANLAPGVSLGEALAAIEELAAElKLPPGVSIEFTGQAEEEQESF 850
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  880 NTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAK 959
Cdd:COG0841    851 SSLGLAFLLALLLVYLVLAAQFESFIQPLIILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFAN 930
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  960 DRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLVTN 1039
Cdd:COG0841    931 QLREEGMSLREAILEAARLRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDR 1010

                   ....
gi 1889614193 1040 KKEK 1043
Cdd:COG0841   1011 LRRR 1014
ACR_tran pfam00873
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ...
3-1037 0e+00

AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.


Pssm-ID: 395701 [Multi-domain]  Cd Length: 1021  Bit Score: 1037.64  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    3 FSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFS 82
Cdd:pfam00873    1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   83 QgTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADL 162
Cdd:pfam00873   81 Q-SSYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPDGSYTQTDLRDYADT 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  163 NIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLgaqpisNDSQFQILLNVKGR 242
Cdd:pfam00873  160 NIKPQLSRVPGVGDVQLFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQL------EGQGLQALIRAQGQ 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  243 LNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPT 322
Cdd:pfam00873  234 LQSAEDFEKIIVKNQD-GSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQ 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  323 GVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLV 402
Cdd:pfam00873  313 GVEIVVVYDTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLV 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  403 LAIGIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTI 481
Cdd:pfam00873  393 LAIGLVVDDAIVVVENIERVLeENGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAIL 472
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  482 ISAFNSLTLSPALAALLLKSHDAKPDaftrllnklfgRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGGT 561
Cdd:pfam00873  473 LSVLVALTLTPALCATLLKPRREPKH-----------GGFFRWFNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGS 541
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  562 IKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSVNGFTNSPNSGIVFTPLE 641
Cdd:pfam00873  542 VWLFVRIPTEFLPEEDEGVFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAVTGFAFSGDNNGPNSGDAFISLK 621
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  642 SFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIED-RANKGFEALFNSLQAVIGKAQQDPA 720
Cdd:pfam00873  622 PWKERPGPEKSVQALIERLRKALKQIPGANVFLFQPIQLRGLGTISGFRSDLQVkIFGDDLDALDEARNQILAALAQLPG 701
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  721 LMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLKVR 800
Cdd:pfam00873  702 LSDVRSDGQEDQPQLQVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVR 781
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  801 NRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLAD-TLPTGIEYEWTEVTYQQVLAG 879
Cdd:pfam00873  782 NPYGKMIPLSAFAKIEWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQvKLPPGYGYTWTGQFEQEQLAG 861
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  880 NTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAK 959
Cdd:pfam00873  862 NSLPILIALALLVVFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFAN 941
                          970       980       990      1000      1010      1020      1030
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1889614193  960 D-RHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLV 1037
Cdd:pfam00873  942 ElREQEGKSLEEAILEACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLF 1020
2A0602 TIGR00915
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ...
3-1049 0e+00

The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 273335 [Multi-domain]  Cd Length: 1044  Bit Score: 1001.94  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    3 FSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFS 82
Cdd:TIGR00915    1 MAKFFIDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   83 QGTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADL 162
Cdd:TIGR00915   81 SSDSDGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVIGLVSDDGSMTKEDLSDYAAS 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  163 NIKDEIARLPGVGDIRMFGAgKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDSQFQILLNVKGR 242
Cdd:TIGR00915  161 NMVDPLSRLEGVGDVQLFGS-QYAMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLGGLPAVPGQQLNATIIAQTR 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  243 LNSIEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPT 322
Cdd:TIGR00915  240 LQTPEQFENILLKVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFPQ 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  323 GVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLV 402
Cdd:TIGR00915  320 GMKYVYPYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMV 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  403 LAIGIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTI 481
Cdd:TIGR00915  400 LAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMA 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  482 ISAFNSLTLSPALAALLLKSHD--AKPDAFTRLLNklfgrWlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVG 559
Cdd:TIGR00915  480 LSVLVALILTPALCATMLKPIEkgEHHEKKGGFFG-----W----FNRMFDSSTHGYENGVGKILRRRGRYLLVYVLLVG 550
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  560 GTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFpglSVNGFT---NSPNSGIV 636
Cdd:TIGR00915  551 GMVFLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQAVLAQVTKYLLAKEKANVESVF---TVNGFSfagRGQNMGMA 627
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  637 FTPLESFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQ 716
Cdd:TIGR00915  628 FIRLKDWEERTGKENSVFAIAGRATGHFMQIKDAMVIAFVPPAILELGNATGFDFFLQDRAGLGHEALLQARNQLLGLAA 707
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  717 QDPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILN 796
Cdd:TIGR00915  708 QNPALTRVRPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINK 787
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  797 LKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKvLADTLPTGIEYEWTEVTYQQV 876
Cdd:TIGR00915  788 WYVRNASGEMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQAMAAMEA-IAQKLPPGFGFSWTGMSYEER 866
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  877 LAGNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVE 956
Cdd:TIGR00915  867 LSGSQAPALYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGLSNDVYFQVGLLTTIGLSAKNAILIVE 946
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  957 FAKDRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYML 1036
Cdd:TIGR00915  947 FAKELMAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVV 1026
                         1050
                   ....*....|....*.
gi 1889614193 1037 VTN---KKEKAQENTH 1049
Cdd:TIGR00915 1027 VRRlfkRKAHEKEMSV 1042
PRK15127 PRK15127
multidrug efflux RND transporter permease subunit AcrB;
6-1047 0e+00

multidrug efflux RND transporter permease subunit AcrB;


Pssm-ID: 185081 [Multi-domain]  Cd Length: 1049  Bit Score: 774.08  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    6 FFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQGT 85
Cdd:PRK15127     4 FFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSD 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   86 SDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADLNIK 165
Cdd:PRK15127    84 STGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMK 163
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  166 DEIARLPGVGDIRMFGAgKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDSQFQILLNVKGRLNS 245
Cdd:PRK15127   164 DPISRTSGVGDVQLFGS-QYAMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTS 242
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  246 IEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPTGVE 325
Cdd:PRK15127   243 TEEFGKILLKVNQDGSRVRLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLK 322
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  326 YDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLVLAI 405
Cdd:PRK15127   323 IVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  406 GIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTIISA 484
Cdd:PRK15127   403 GLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSV 482
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  485 FNSLTLSPALAALLLK-----SHDAKPDAFtrllnklFGrWlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVG 559
Cdd:PRK15127   483 LVALILTPALCATMLKpiakgDHGEGKKGF-------FG-W----FNRMFEKSTHHYTDSVGNILRSTGRYLVLYLIIVV 550
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  560 GTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIAL--EVPGVAHTVAFPGLSVNGftNSPNSGIVF 637
Cdd:PRK15127   551 GMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLtkEKNNVESVFAVNGFGFAG--RGQNTGIAF 628
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  638 TPLESFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQQ 717
Cdd:PRK15127   629 VSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLGEAAK 708
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  718 DP-ALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILN 796
Cdd:PRK15127   709 HPdMLVGVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGD 788
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  797 LKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKvLADTLPTGIEYEWTEVTYQQV 876
Cdd:PRK15127   789 WYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEE-LASKLPTGVGYDWTGMSYQER 867
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  877 LAGNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVE 956
Cdd:PRK15127   868 LSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVE 947
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  957 FAKDRHD-SGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYM 1035
Cdd:PRK15127   948 FAKDLMDkEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFV 1027
                         1050
                   ....*....|..
gi 1889614193 1036 LVTNKKEKAQEN 1047
Cdd:PRK15127  1028 VVRRRFSRKNED 1039
RND_permease_2 NF033617
multidrug efflux RND transporter permease subunit;
4-1037 0e+00

multidrug efflux RND transporter permease subunit;


Pssm-ID: 411236 [Multi-domain]  Cd Length: 1009  Bit Score: 712.94  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    4 SHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQ 83
Cdd:NF033617     1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   84 gTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDL-TMVVHLYSPEKthDTAYLSNYADL 162
Cdd:NF033617    81 -SSLGYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYRKANSADTpIMYIGLTSEEM--PRGQLTDYAER 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  163 NIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQ----PISNDSQfqilln 238
Cdd:NF033617   158 VLAPKLSQINGVGSVDVSGGQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDsvvsTVRANDQ------ 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  239 vkgrLNSIEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSK 318
Cdd:NF033617   232 ----LKTAEDYEDLVIKYADNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQE 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  319 NFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSL 398
Cdd:NF033617   308 TLPKNIKVNVLYDRTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTL 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  399 FGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITI 478
Cdd:NF033617   388 MALVLAIGLVVDDAIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAG 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  479 STIISAFNSLTLSPALAALLLKSHDaKPDAFTRLlnklfgrwlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALV 558
Cdd:NF033617   468 AVIISGIVALTLTPMMCSRLLKANE-KPGRFARA------------VDRFFDGLTARYGRGLKWVLKHRPLTLVVALATL 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  559 GGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLsvnGFTNSPNSGIVFT 638
Cdd:NF033617   535 ALLPLLYVFIPKELAPSEDRGVIFGMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGV---GGNPGDNTGFGII 611
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  639 PLESFDKRTDpsqSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGlGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQQD 718
Cdd:NF033617   612 NLKPWDERDV---SAQEIIDRLRPKLAKVPGMDLFLFPLQDLPG-GAGSSLPQYQVTLTPSDYDSLFTWAEKLKEKLRKS 687
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  719 PALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLK 798
Cdd:NF033617   688 PQFADVDSDLQDKGPELNVDIDRDKAARLGISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIY 767
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  799 VRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLADTLPTGIEYEWTEVTYQQVLA 878
Cdd:NF033617   768 VRSNDGKLVPLSTLAKIEERAAPLSLNHFNQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEE 847
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  879 GNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFA 958
Cdd:NF033617   848 GSSLLFLFLLALAAIYLVLAIQYESFVDPLTILSTVPLAGCGALLALALGGQSMNIYAQIGLITLIGLVKKNGILMVEFA 927
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  959 KD-RHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLV 1037
Cdd:NF033617   928 NElQRHQGLSRREAIYQAAALRLRPILMTTLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLL 1007
 
Name Accession Description Interval E-value
AcrB COG0841
Multidrug efflux pump subunit AcrB [Defense mechanisms];
1-1043 0e+00

Multidrug efflux pump subunit AcrB [Defense mechanisms];


Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 1093.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    1 MKFSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYM 80
Cdd:COG0841      1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   81 FSQgTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPekTHDTAYLSNYA 160
Cdd:COG0841     81 TST-SSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSD--DLDELELSDYA 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  161 DLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQpisndsQFQILLNVK 240
Cdd:COG0841    158 ERNIKDRLERVPGVGQVQIFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGG------DREYTVRTN 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  241 GRLNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNF 320
Cdd:COG0841    232 GRLKTPEEFENIVIRTND-GSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASL 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  321 PTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFG 400
Cdd:COG0841    311 PEGVELTIVYDQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFA 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  401 LVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITIST 480
Cdd:COG0841    391 LVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIAL 470
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  481 IISAFNSLTLSPALAALLLKSHDAKPDaftrllnklfgRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGG 560
Cdd:COG0841    471 LISLFVALTLTPALCARLLKPHPKGKK-----------GRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLAL 539
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  561 TIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSvnGFTNSPNSGIVFTPL 640
Cdd:COG0841    540 SVLLFGRLPTEFFPEEDQGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFS--GGGSGSNSGTIFVTL 617
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  641 ESFDKRTdpsQSAMAIAAQLNKRFAAIDEAFVAVFPPPPiQGLGTTGGFKLQIEDRankGFEALFNSLQAVIGKAQQDPA 720
Cdd:COG0841    618 KPWDERD---RSADEIIARLREKLAKIPGARVFVFQPPA-GGLGSGAPIEVQLQGD---DLEELAAAAEKLLAALRQIPG 690
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  721 LMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLKVR 800
Cdd:COG0841    691 LVDVRSDLQLGKPELQLDIDREKAAALGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVR 770
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  801 NRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLAD-TLPTGIEYEWTEVTYQQVLAG 879
Cdd:COG0841    771 TPDGEMVPLSSVATIEEGTGPSSINRYNGQRSVTVSANLAPGVSLGEALAAIEELAAElKLPPGVSIEFTGQAEEEQESF 850
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  880 NTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAK 959
Cdd:COG0841    851 SSLGLAFLLALLLVYLVLAAQFESFIQPLIILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFAN 930
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  960 DRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLVTN 1039
Cdd:COG0841    931 QLREEGMSLREAILEAARLRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDR 1010

                   ....
gi 1889614193 1040 KKEK 1043
Cdd:COG0841   1011 LRRR 1014
ACR_tran pfam00873
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ...
3-1037 0e+00

AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.


Pssm-ID: 395701 [Multi-domain]  Cd Length: 1021  Bit Score: 1037.64  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    3 FSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFS 82
Cdd:pfam00873    1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   83 QgTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADL 162
Cdd:pfam00873   81 Q-SSYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPDGSYTQTDLRDYADT 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  163 NIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLgaqpisNDSQFQILLNVKGR 242
Cdd:pfam00873  160 NIKPQLSRVPGVGDVQLFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQL------EGQGLQALIRAQGQ 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  243 LNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPT 322
Cdd:pfam00873  234 LQSAEDFEKIIVKNQD-GSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQ 312
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  323 GVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLV 402
Cdd:pfam00873  313 GVEIVVVYDTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLV 392
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  403 LAIGIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTI 481
Cdd:pfam00873  393 LAIGLVVDDAIVVVENIERVLeENGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAIL 472
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  482 ISAFNSLTLSPALAALLLKSHDAKPDaftrllnklfgRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGGT 561
Cdd:pfam00873  473 LSVLVALTLTPALCATLLKPRREPKH-----------GGFFRWFNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGS 541
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  562 IKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSVNGFTNSPNSGIVFTPLE 641
Cdd:pfam00873  542 VWLFVRIPTEFLPEEDEGVFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAVTGFAFSGDNNGPNSGDAFISLK 621
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  642 SFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIED-RANKGFEALFNSLQAVIGKAQQDPA 720
Cdd:pfam00873  622 PWKERPGPEKSVQALIERLRKALKQIPGANVFLFQPIQLRGLGTISGFRSDLQVkIFGDDLDALDEARNQILAALAQLPG 701
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  721 LMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLKVR 800
Cdd:pfam00873  702 LSDVRSDGQEDQPQLQVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVR 781
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  801 NRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLAD-TLPTGIEYEWTEVTYQQVLAG 879
Cdd:pfam00873  782 NPYGKMIPLSAFAKIEWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQvKLPPGYGYTWTGQFEQEQLAG 861
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  880 NTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAK 959
Cdd:pfam00873  862 NSLPILIALALLVVFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFAN 941
                          970       980       990      1000      1010      1020      1030
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1889614193  960 D-RHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLV 1037
Cdd:pfam00873  942 ElREQEGKSLEEAILEACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLF 1020
2A0602 TIGR00915
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ...
3-1049 0e+00

The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 273335 [Multi-domain]  Cd Length: 1044  Bit Score: 1001.94  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    3 FSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFS 82
Cdd:TIGR00915    1 MAKFFIDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   83 QGTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADL 162
Cdd:TIGR00915   81 SSDSDGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVIGLVSDDGSMTKEDLSDYAAS 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  163 NIKDEIARLPGVGDIRMFGAgKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDSQFQILLNVKGR 242
Cdd:TIGR00915  161 NMVDPLSRLEGVGDVQLFGS-QYAMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLGGLPAVPGQQLNATIIAQTR 239
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  243 LNSIEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPT 322
Cdd:TIGR00915  240 LQTPEQFENILLKVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFPQ 319
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  323 GVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLV 402
Cdd:TIGR00915  320 GMKYVYPYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMV 399
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  403 LAIGIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTI 481
Cdd:TIGR00915  400 LAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMA 479
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  482 ISAFNSLTLSPALAALLLKSHD--AKPDAFTRLLNklfgrWlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVG 559
Cdd:TIGR00915  480 LSVLVALILTPALCATMLKPIEkgEHHEKKGGFFG-----W----FNRMFDSSTHGYENGVGKILRRRGRYLLVYVLLVG 550
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  560 GTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFpglSVNGFT---NSPNSGIV 636
Cdd:TIGR00915  551 GMVFLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQAVLAQVTKYLLAKEKANVESVF---TVNGFSfagRGQNMGMA 627
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  637 FTPLESFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQ 716
Cdd:TIGR00915  628 FIRLKDWEERTGKENSVFAIAGRATGHFMQIKDAMVIAFVPPAILELGNATGFDFFLQDRAGLGHEALLQARNQLLGLAA 707
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  717 QDPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILN 796
Cdd:TIGR00915  708 QNPALTRVRPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINK 787
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  797 LKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKvLADTLPTGIEYEWTEVTYQQV 876
Cdd:TIGR00915  788 WYVRNASGEMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQAMAAMEA-IAQKLPPGFGFSWTGMSYEER 866
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  877 LAGNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVE 956
Cdd:TIGR00915  867 LSGSQAPALYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGLSNDVYFQVGLLTTIGLSAKNAILIVE 946
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  957 FAKDRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYML 1036
Cdd:TIGR00915  947 FAKELMAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVV 1026
                         1050
                   ....*....|....*.
gi 1889614193 1037 VTN---KKEKAQENTH 1049
Cdd:TIGR00915 1027 VRRlfkRKAHEKEMSV 1042
PRK15127 PRK15127
multidrug efflux RND transporter permease subunit AcrB;
6-1047 0e+00

multidrug efflux RND transporter permease subunit AcrB;


Pssm-ID: 185081 [Multi-domain]  Cd Length: 1049  Bit Score: 774.08  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    6 FFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQGT 85
Cdd:PRK15127     4 FFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSD 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   86 SDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADLNIK 165
Cdd:PRK15127    84 STGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMK 163
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  166 DEIARLPGVGDIRMFGAgKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDSQFQILLNVKGRLNS 245
Cdd:PRK15127   164 DPISRTSGVGDVQLFGS-QYAMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTS 242
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  246 IEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPTGVE 325
Cdd:PRK15127   243 TEEFGKILLKVNQDGSRVRLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLK 322
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  326 YDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLVLAI 405
Cdd:PRK15127   323 IVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  406 GIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTIISA 484
Cdd:PRK15127   403 GLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSV 482
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  485 FNSLTLSPALAALLLK-----SHDAKPDAFtrllnklFGrWlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVG 559
Cdd:PRK15127   483 LVALILTPALCATMLKpiakgDHGEGKKGF-------FG-W----FNRMFEKSTHHYTDSVGNILRSTGRYLVLYLIIVV 550
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  560 GTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIAL--EVPGVAHTVAFPGLSVNGftNSPNSGIVF 637
Cdd:PRK15127   551 GMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLtkEKNNVESVFAVNGFGFAG--RGQNTGIAF 628
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  638 TPLESFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQQ 717
Cdd:PRK15127   629 VSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLGEAAK 708
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  718 DP-ALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILN 796
Cdd:PRK15127   709 HPdMLVGVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGD 788
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  797 LKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKvLADTLPTGIEYEWTEVTYQQV 876
Cdd:PRK15127   789 WYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEE-LASKLPTGVGYDWTGMSYQER 867
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  877 LAGNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVE 956
Cdd:PRK15127   868 LSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVE 947
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  957 FAKDRHD-SGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYM 1035
Cdd:PRK15127   948 FAKDLMDkEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFV 1027
                         1050
                   ....*....|..
gi 1889614193 1036 LVTNKKEKAQEN 1047
Cdd:PRK15127  1028 VVRRRFSRKNED 1039
PRK10555 PRK10555
multidrug efflux RND transporter permease AcrD;
4-1037 0e+00

multidrug efflux RND transporter permease AcrD;


Pssm-ID: 182544 [Multi-domain]  Cd Length: 1037  Bit Score: 770.15  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    4 SHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQ 83
Cdd:PRK10555     2 ANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQ 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   84 GTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADLN 163
Cdd:PRK10555    82 SSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASN 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  164 IKDEIARLPGVGDIRMFGAgKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDSQFQILLNVKGRL 243
Cdd:PRK10555   162 IQDPLSRVNGVGDIDAYGS-QYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  244 NSIEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPTG 323
Cdd:PRK10555   241 QTPEQFRDITLRVNQDGSEVTLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLNRLDELAQYFPHG 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  324 VEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLVL 403
Cdd:PRK10555   321 LEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVL 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  404 AIGIVVDDAIVVVENVERNI-EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTII 482
Cdd:PRK10555   401 AIGLLVDDAIVVVENVERIMsEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVL 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  483 SAFNSLTLSPALAALLLK-----SHDAKpdaftrllnKLFGRWlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIAL 557
Cdd:PRK10555   481 SVLVAMILTPALCATLLKplkkgEHHGQ---------KGFFGW----FNRMFNRNAERYEKGVAKILHRSLRWILIYVLL 547
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  558 VGGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALE-----VPGVAHTV-AFPGlsvngfTNSP 631
Cdd:PRK10555   548 LGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFThekdnVMSVFATVgSGPG------GNGQ 621
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  632 NSGIVFTPLESFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIEDRANKGFEALFNSLQAV 711
Cdd:PRK10555   622 NVARMFIRLKDWDERDSKTGTSFAIIERATKAFNKIKEARVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQL 701
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  712 IGKAQQDPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDP 791
Cdd:PRK10555   702 LALAAKNPELTRVRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLP 781
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  792 DQILNLKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKvLADTLPTGIEYEWTEV 871
Cdd:PRK10555   782 DDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMES-LVKQLPNGFGLEWTAM 860
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  872 TYQQVLAGNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNA 951
Cdd:PRK10555   861 SYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNA 940
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  952 ILMVEFAKDRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTP 1031
Cdd:PRK10555   941 ILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVP 1020

                   ....*.
gi 1889614193 1032 VFYMLV 1037
Cdd:PRK10555  1021 LFFVLV 1026
PRK09577 PRK09577
multidrug efflux RND transporter permease subunit;
6-1037 0e+00

multidrug efflux RND transporter permease subunit;


Pssm-ID: 169981 [Multi-domain]  Cd Length: 1032  Bit Score: 738.59  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    6 FFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMfSQGT 85
Cdd:PRK09577     4 FFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYT-SATS 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   86 SDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADLNIK 165
Cdd:PRK09577    83 SAGQASLSLTFKQGVNADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVL 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  166 DEIARLPGVGDIRMFGAgKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDSQFQILLNVKGRLNS 245
Cdd:PRK09577   163 QALRRVEGVGKVQFWGA-EYAMRIWPDPVKLAALGLTASDIASAVRAHNARVTIGDIGRSAVPDSAPIAATVFADAPLKT 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  246 IEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKNFPTGVE 325
Cdd:PRK09577   242 PEDFGAIALRARADGSALYLRDVARIEFGGNDYNYPSYVNGKTATGMGIKLAPGSNAVATEKRVRATMDELSRYFPPGVK 321
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  326 YDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLVLAI 405
Cdd:PRK09577   322 YQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAI 401
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  406 GIVVDDAIVVVENVER-NIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTIISA 484
Cdd:PRK09577   402 GILVDDAIVVVENVERlMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSA 481
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  485 FNSLTLSPALAALLLKSHDAkpDAFTRllnklfgRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGGTIKL 564
Cdd:PRK09577   482 FLALSLTPALCATLLKPVDG--DHHEK-------RGFFGWFNRFVARSTQRYATRVGAILKRPLRWLVVYGALTAAAALL 552
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  565 FDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSVNGftNSPNSGIVFTPLESFD 644
Cdd:PRK09577   553 FTRLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFALGGFNLYG--EGPNGGMIFVTLKDWK 630
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  645 KRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQQDPALMGL 724
Cdd:PRK09577   631 ERKAARDHVQAIVARINERFAGTPNTTVFAMNSPALPDLGSTSGFDFRLQDRGGLGYAAFVAAREQLLAEGAKDPALTDL 710
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  725 YSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLKVRNRSG 804
Cdd:PRK09577   711 MFAGTQDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRLDPDDVKKLRVRNAQG 790
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  805 NMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKvLADTLPTGIEYEWTEVTYQQVLAGNTMVY 884
Cdd:PRK09577   791 EMVPLAAFATLHWTLGPPQLTRYNGYPSFTINGSAAPGHSSGEAMAAIER-IAATLPAGIGYAWSGQSFEERLSGAQAPM 869
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  885 VFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAKDRHDS 964
Cdd:PRK09577   870 LFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQ 949
                          970       980       990      1000      1010      1020      1030
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1889614193  965 GLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLV 1037
Cdd:PRK09577   950 RMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVV 1022
RND_permease_2 NF033617
multidrug efflux RND transporter permease subunit;
4-1037 0e+00

multidrug efflux RND transporter permease subunit;


Pssm-ID: 411236 [Multi-domain]  Cd Length: 1009  Bit Score: 712.94  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    4 SHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQ 83
Cdd:NF033617     1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   84 gTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDL-TMVVHLYSPEKthDTAYLSNYADL 162
Cdd:NF033617    81 -SSLGYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYRKANSADTpIMYIGLTSEEM--PRGQLTDYAER 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  163 NIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQ----PISNDSQfqilln 238
Cdd:NF033617   158 VLAPKLSQINGVGSVDVSGGQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDsvvsTVRANDQ------ 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  239 vkgrLNSIEEFEQVIIKVGDEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSK 318
Cdd:NF033617   232 ----LKTAEDYEDLVIKYADNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQE 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  319 NFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLSL 398
Cdd:NF033617   308 TLPKNIKVNVLYDRTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTL 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  399 FGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITI 478
Cdd:NF033617   388 MALVLAIGLVVDDAIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAG 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  479 STIISAFNSLTLSPALAALLLKSHDaKPDAFTRLlnklfgrwlfkpFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALV 558
Cdd:NF033617   468 AVIISGIVALTLTPMMCSRLLKANE-KPGRFARA------------VDRFFDGLTARYGRGLKWVLKHRPLTLVVALATL 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  559 GGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLsvnGFTNSPNSGIVFT 638
Cdd:NF033617   535 ALLPLLYVFIPKELAPSEDRGVIFGMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGV---GGNPGDNTGFGII 611
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  639 PLESFDKRTDpsqSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGlGTTGGFKLQIEDRANKGFEALFNSLQAVIGKAQQD 718
Cdd:NF033617   612 NLKPWDERDV---SAQEIIDRLRPKLAKVPGMDLFLFPLQDLPG-GAGSSLPQYQVTLTPSDYDSLFTWAEKLKEKLRKS 687
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  719 PALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNLK 798
Cdd:NF033617   688 PQFADVDSDLQDKGPELNVDIDRDKAARLGISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIY 767
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  799 VRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLADTLPTGIEYEWTEVTYQQVLA 878
Cdd:NF033617   768 VRSNDGKLVPLSTLAKIEERAAPLSLNHFNQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEE 847
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  879 GNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFA 958
Cdd:NF033617   848 GSSLLFLFLLALAAIYLVLAIQYESFVDPLTILSTVPLAGCGALLALALGGQSMNIYAQIGLITLIGLVKKNGILMVEFA 927
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  959 KD-RHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLV 1037
Cdd:NF033617   928 NElQRHQGLSRREAIYQAAALRLRPILMTTLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLL 1007
PRK09579 PRK09579
multidrug efflux RND transporter permease subunit;
1-1045 1.75e-149

multidrug efflux RND transporter permease subunit;


Pssm-ID: 169983 [Multi-domain]  Cd Length: 1017  Bit Score: 471.63  E-value: 1.75e-149
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    1 MKFSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYM 80
Cdd:PRK09579     1 MAFTDPFIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYM 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   81 fsqgTSDGRM---TLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHdtAYLS 157
Cdd:PRK09579    81 ----TSVSRQnfsIISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYISFYSEEMSN--PQIT 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  158 NYADLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISNDsqfqilL 237
Cdd:PRK09579   155 DYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKGEYVVTS------I 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  238 NVKGRLNSIEEFEQVIIKVGDEGQLtRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLS 317
Cdd:PRK09579   229 NASTELKSAEAFAAIPVKTSGDSRV-LLGDVARVEMGAENYDSISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELE 307
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  318 KNFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLS 397
Cdd:PRK09579   308 SQLPPNLKVSIAYDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLT 387
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  398 LFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTIT 477
Cdd:PRK09579   388 LLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLA 467
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  478 ISTIISAFNSLTLSPALAALLLKsHDAKPDAFTRLLnklfgrwlfkpfNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIAL 557
Cdd:PRK09579   468 GAVIISGIVALTLSPMMCALLLR-HEENPSGLAHRL------------DRLFERLKQRYQRALHGTLNTRPVVLVFAVIV 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  558 VGGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVahtvaFPGLSVNGFtNSPNSGIVF 637
Cdd:PRK09579   535 LALIPVLLKFTQSELAPEEDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEY-----YSSFQINGF-NGVQSGIGG 608
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  638 TPLESFDKRtdpSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTtgGFKLQIEDRANKGFEALFNSLQAVIGKAQQ 717
Cdd:PRK09579   609 FLLKPWNER---ERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGE--GLPFQFVINTANDYESLLQVAQRVKQRAQE 683
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  718 DPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADADYRLDPDQILNL 797
Cdd:PRK09579   684 SGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEINRFTIDGRSYKVIAQVERPYRDNPGWLNNY 763
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  798 KVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPApgYSSDQAQVAIEKVLADTLPTGIEYEWTEVTYQQVL 877
Cdd:PRK09579   764 YVKNEQGQLLPLSTLITLSDRARPRQLNQFQQLNSAIISGFPI--VSMGEAIETVQQIAREEAPEGFAFDYAGASRQYVQ 841
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  878 AGNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEF 957
Cdd:PRK09579   842 EGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEF 921
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  958 AKD-RHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYML 1036
Cdd:PRK09579   922 ANQlRHEQGLSRREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTL 1001

                   ....*....
gi 1889614193 1037 VTNKKEKAQ 1045
Cdd:PRK09579  1002 LAKPDAAPG 1010
PRK10503 PRK10503
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
4-1036 5.69e-117

MdtB/MuxB family multidrug efflux RND transporter permease subunit;


Pssm-ID: 182501 [Multi-domain]  Cd Length: 1040  Bit Score: 385.62  E-value: 5.69e-117
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    4 SHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQ 83
Cdd:PRK10503    13 SRLFILRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQ 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   84 gTSDGRMTLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGV---VAEKSSPDLTMVVhlyspekTHDTAYLSNYA 160
Cdd:PRK10503    93 -SSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVyskVNPADPPIMTLAV-------TSTAMPMTQVE 164
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  161 DL---NIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISndsqfqILL 237
Cdd:PRK10503   165 DMvetRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRA------VTL 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  238 NVKGRLNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLS 317
Cdd:PRK10503   239 SANDQMQSAEEYRQLIIAYQN-GAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIATADSIRQMLPQLT 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  318 KNFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLS 397
Cdd:PRK10503   318 ESLPKSVKVTVLSDRTTNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLT 397
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  398 LFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTIT 477
Cdd:PRK10503   398 LMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLA 477
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  478 ISTIISAFNSLTLSPALAALLLKSHD-AKPDAFTRllnklfgrwlfkPFNRVFNRGAKGYEKLVQKLIR---MTVVVMVA 553
Cdd:PRK10503   478 VAILISAVVSLTLTPMMCARMLSQESlRKQNRFSR------------ASERMFDRVIAAYGRGLAKVLNhpwLTLSVALS 545
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  554 YIALvggTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGlsVNGFTNSPNS 633
Cdd:PRK10503   546 TLLL---TVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG--VDGTNPSLNS 620
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  634 GIVFTPLESFDKRTDPSQsamAIAAQLNKRFAAIDEAFVAVfppPPIQGLG-------TTGGFKLQiedraNKGFEALFN 706
Cdd:PRK10503   621 ARLQINLKPLDERDDRVQ---KVIARLQTAVAKVPGVDLYL---QPTQDLTidtqvsrTQYQFTLQ-----ATSLDALST 689
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  707 SLQAVIGKAQQDPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADAD 786
Cdd:PRK10503   690 WVPKLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTE 769
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  787 YRLDPDQILNLKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAI---EKVLAdtLPTG 863
Cdd:PRK10503   770 NTPGLAALDTIRLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAImdtEKTLN--LPAD 847
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  864 I--EYEWTEVTYQQVLaGNTmVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALI 941
Cdd:PRK10503   848 IttQFQGSTLAFQSAL-GST-VWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMIAGSELDVIAIIGII 925
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  942 VLVALASKNAILMVEFA-KDRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMI 1020
Cdd:PRK10503   926 LLIGIVKKNAIMMIDFAlAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLI 1005
                         1050
                   ....*....|....*.
gi 1889614193 1021 GVTVFGLLFTPVFYML 1036
Cdd:PRK10503  1006 VSQVLTLFTTPVIYLL 1021
PRK10614 PRK10614
multidrug efflux system subunit MdtC; Provisional
1-1050 1.58e-107

multidrug efflux system subunit MdtC; Provisional


Pssm-ID: 182589 [Multi-domain]  Cd Length: 1025  Bit Score: 359.43  E-value: 1.58e-107
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    1 MKFSHFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQ---EINGTENM 77
Cdd:PRK10614     1 MKFFALFIYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERslgRIAGVNEM 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   78 LYMFSQGTSdgRMTLTvtFALGTDLDRAQVQVQNRVNSALPRLPEEVQRLGVVaEKSSPDLTMVVHLYSPEKTHDTAYLS 157
Cdd:PRK10614    81 TSSSSLGST--RIILQ--FDFDRDINGAARDVQAAINAAQSLLPSGMPSRPTY-RKANPSDAPIMILTLTSDTYSQGQLY 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  158 NYADLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLgaqpisNDSQFQILL 237
Cdd:PRK10614   156 DFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRQAISNANVRRPQGAV------EDGTHRWQI 229
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  238 NVKGRLNSIEEFEQVIIKVGDeGQLTRLSDIARV-DLGQDTYAlrAELDN-QPALAMPIFQRPGSNAIELSDQVRETMAR 315
Cdd:PRK10614   230 QTNDELKTAAEYQPLIIHYNN-GAAVRLGDVATVtDSVQDVRN--AGMTNaKPAILLMIRKLPEANIIQTVDRIRAKLPE 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  316 LSKNFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINT 395
Cdd:PRK10614   307 LRETIPAAIDLQIAQDRSPTIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNN 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  396 LSLFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALT 475
Cdd:PRK10614   387 LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFREFAVT 466
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  476 ITISTIISAFNSLTLSPALAALLLKSHdaKPDAFTRLlnklfgrwlfKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYI 555
Cdd:PRK10614   467 LSVAIGISLLVSLTLTPMMCAWLLKSS--KPREQKRL----------RGFGRMLVALQQGYGRSLKWVLNHTRWVGVVLL 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  556 ALVGGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAhtvafpglSVNGFT--NSPNS 633
Cdd:PRK10614   535 GTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVD--------NVTGFTggSRVNS 606
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  634 GIVFTPLESFDKRTDpsqSAMAIAAQLNKRFAaiDEAFVAVFpPPPIQGLGTTGGfklqiEDRANKGFEALFNSLQA--- 710
Cdd:PRK10614   607 GMMFITLKPLSERSE---TAQQVIDRLRVKLA--KEPGANLF-LMAVQDIRVGGR-----QSNASYQYTLLSDDLAAlre 675
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  711 ---VIGKA-QQDPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGRTYQVNAQADAD 786
Cdd:PRK10614   676 wepKIRKAlAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPLNQYKVVMEVDPR 755
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  787 YRLDPDQILNLKVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYPSAELNGSPAPGYSSDQAQVAIEKVLAD-TLPTGI- 864
Cdd:PRK10614   756 YTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIERAMTQlGVPSTVr 835
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  865 -EYEWTEVTYQQVLagNTMVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGV-WFvgsdNNIFTQIALI- 941
Cdd:PRK10614   836 gSFAGTAQVFQETM--NSQLILILAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALeLF----NAPFSLIALIg 909
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  942 --VLVALASKNAILMVEFAKDRHDSG-LSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSG 1018
Cdd:PRK10614   910 imLLIGIVKKNAIMMVDFALEAQRNGnLTAQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGAELRQPLGITIVGG 989
                         1050      1060      1070
                   ....*....|....*....|....*....|..
gi 1889614193 1019 MIGVTVFGLLFTPVFYMLVTNKKEKAQENTHD 1050
Cdd:PRK10614   990 LVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQ 1021
CusA COG3696
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
5-1047 1.81e-106

Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];


Pssm-ID: 442911 [Multi-domain]  Cd Length: 1031  Bit Score: 356.65  E-value: 1.81e-106
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    5 HFFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEINGTENMLYMFSQ- 83
Cdd:COG3696      7 RFSLRNRLLVLLLTLLLAAAGIYSLRRLPIDAFPDITNVQVQVITEAPGLSPEEVEQQVTYPIETALNGLPGVKEVRSIs 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   84 --GTSDgrmtLTVTFALGTDLDRAQVQVQNRVNSALPRLPEEVQ-RLGvvaekssPDLT------MVVhLYSPEKTHDTA 154
Cdd:COG3696     87 rfGLSV----VTVIFEDGTDIYWARQLVLERLQQVREQLPAGVTpELG-------PISTglgeiyQYT-LESDPGKYSLM 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  155 YLSNYADLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLgaqpisNDSQFQ 234
Cdd:COG3696    155 ELRTLQDWVIRPQLRSVPGVAEVNSFGGFVKQYQVLVDPAKLRAYGLTLDDVIEALERNNANVGGGYI------ERGGQE 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  235 ILLNVKGRLNSIEEFEQVIIKVGDeGQLTRLSDIARVDLGqdtYALR---AELD-NQPALAMPIFQRPGSNAIELSDQVR 310
Cdd:COG3696    229 YLVRGIGLIRSLEDIENIVVKTRN-GTPVLLRDVAEVRIG---PAPRrgaATLNgEGEVVGGIVLMLKGENALEVIEAVK 304
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  311 ETMARLSKNFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLG 390
Cdd:COG3696    305 AKLAELKPSLPEGVKIVPFYDRSDLIDRAIHTVTKNLLEGALLVILVLFLFLGNLRAALIVALAIPLSLLFAFIVMRLFG 384
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  391 VSINTLSLFGLVLAIGIVVDDAIVVVENVERNIEK------GLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGL 464
Cdd:COG3696    385 ISANLMSLGGLAIDFGIIVDGAVVMVENILRRLEEnraagtPRERLEVVLEAAREVRRPIFFATLIIILVFLPIFTLEGV 464
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  465 SGQFYKQFALTITISTIISAFNSltlspalaalllkshdakpdaFTrlLNKLFGRWLFK--------PFNRVFNRgakGY 536
Cdd:COG3696    465 EGKLFRPMALTVIFALLGALLLS---------------------LT--LVPVLASLLLRgkvpekenPLVRWLKR---LY 518
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  537 EKLVQKLIRMTVVVMVAYIALVGGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHT 616
Cdd:COG3696    519 RPLLRWALRHPKLVLAVALVLLVLALALFPRLGSEFLPELDEGDLLVMATLPPGISLEESVELGQQVERILKSFPEVESV 598
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  617 VAFPGlsvngftnSPNSGIVFTPLESFD-----KRTDPSQSAM---AIAAQLNKRFAAIDEAFVAVFPPppiqglgttgg 688
Cdd:COG3696    599 VSRTG--------RAEDATDPMGVNMSEtfvilKPRSEWRSGRtkeELIAEMREALEQIPGVNFNFSQP----------- 659
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  689 fklqIEDRANkgfEAL---------------FNSLQAvigKAQQDPALM----GLYSSFRIQV---PQMDIDIDREQALI 746
Cdd:COG3696    660 ----IQMRVD---ELLsgvradvavkifgddLDVLRR---LAEQIEAVLktvpGAADVQVERVtglPQLDIRIDRDAAAR 729
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  747 QGIPLDEVFNALQIYLG-----SVYVNDfnmfgRTYQVNAQADADYRLDPDQILNLKVRNRSGNMVPLGSVLTVTPTIGP 821
Cdd:COG3696    730 YGLNVADVQDVVETAIGgkavgQVYEGE-----RRFDIVVRLPEELRDDPEAIRNLPIPTPSGAQVPLSQVADIEVVEGP 804
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  822 DRVMHYNGYP----SAELNGSPAPGYSSD-QAQVAiEKVladTLPTGIEYEWT-EVTYQQVlAGNTMVYVFPLVVLLVFM 895
Cdd:COG3696    805 NQISRENGRRrivvQANVRGRDLGSFVAEaQAKVA-EQV---KLPPGYYIEWGgQFENLQR-ATARLAIVVPLALLLIFL 879
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  896 VLAAQYESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAKDRHDSGLSHLEAILEA 975
Cdd:COG3696    880 LLYLAFGSVRDALLILLNVPFALIGGVLALWLRGMPLSVSAGVGFIALFGVAVLNGVVLVSYINQLRAEGLDLREAIIEG 959
                         1050      1060      1070      1080      1090      1100      1110
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1889614193  976 CRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLVTNKKEKAQEN 1047
Cdd:COG3696    960 ALERLRPVLMTALVAALGLLPMALSTGPGSEVQRPLATVVIGGLITSTLLTLLVLPALYLLFGRRRLRRAAA 1031
2A0601 TIGR00914
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ...
6-1046 6.01e-76

heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 129992 [Multi-domain]  Cd Length: 1051  Bit Score: 271.25  E-value: 6.01e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193    6 FFIQRPIFAAMLSLVILIAGGISLFQLPVSEYPEVVPPTVVVTANYPGANPTVIAQTVATPLEQEI---NGTENMLYMFS 82
Cdd:TIGR00914    8 FSVAQRWLVLLATLVMAILGIWSYNRLPIDAVPDITNVQVQINTSAPGYSPLEVEQRVTYPIETAMaglPGLETTRSLSR 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193   83 QGTSDgrmtLTVTFALGTDLDRAQVQVQNRVNSALPRLPEevqrlGVVAEKSsPDLTMV--VHLYSPE----------KT 150
Cdd:TIGR00914   88 YGLSQ----VTVIFKDGTDLYFARQLVNERLQQARDNLPE-----GVSPEMG-PISTGLgeIFLYTVEaeegarkkdgGA 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  151 HDTAYLSNYADLNIKDEIARLPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLgaqpisND 230
Cdd:TIGR00914  158 YTLTDLRTIQDWIIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGAGYI------ER 231
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  231 SQFQILLNVKGRLNSIEEFEQVIIKVGdEGQLTRLSDIARVDLGQDTYALRAELDNQPALAMPIFQRPGSNAIELSDQVR 310
Cdd:TIGR00914  232 RGEQYLVRAPGQVQSMDDIRNIVIATG-EGVPIRIRDVARVQIGKELRTGAATENGKEVVLGTVFMLIGENSRTVAQAVG 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  311 ETMARLSKNFPTGVEYDIVYDPTVFVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLG 390
Cdd:TIGR00914  311 DKLETINKTLPEGVEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQG 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  391 VSINTLSLFGlvLAIGIVVDDAIVVVENVERNIEK-----GLSPLEATRV-----AMSEVTGPIIAIALVLSAVFIPTAF 460
Cdd:TIGR00914  391 ISANLMSLGA--LDFGLIVDGAVVIVENAHRRLAEaqhhhGRQLTLKERLhevfaASREVRRPLIFGQLIITLVFLPIFT 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  461 ITGLSGQFYKQFALTITISTIISAFNSLTLSPALAALLLKSHDAKPDaftrllnklfgrwlfkpfNRVFNRGAKGYEKLV 540
Cdd:TIGR00914  469 LTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKE------------------NRLMRVLKRRYEPLL 530
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  541 QKLIRMTVVVMVAYIALVGGTIKLFDTVPGGFIPQQDKQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFP 620
Cdd:TIGR00914  531 ERVLAWPAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLIKSFPEVARVFAKT 610
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  621 G-LSVNGFTNSPNSGIVFTPLESFDKRTDPSQSAMAIAAQLNKRFAAIDEAFVAVFPPPPIQGLGTTGGFKlqiEDRANK 699
Cdd:TIGR00914  611 GtAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQPIQMRFNELISGVR---SDVAVK 687
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  700 GFEALFNSL----QAVIGKAQQDPALMGLYSSFRIQVPQMDIDIDREQALIQGIPLDEVFNALQIYLGSVYVNDFNMFGR 775
Cdd:TIGR00914  688 VFGDDLDDLdataEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATAVGGRMSGETFEGDR 767
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  776 TYQVNAQADADYRLDPDQILNL-----KVRNRSGNMVPLGSVLTVTPTIGPDRVMHYNGYP----SAELNGSPAPGYSSD 846
Cdd:TIGR00914  768 RFDIVIRLPESLRESPQALRQLpiplpLSEDARKQFIPLSDVADLRVSPGPNQISRENGKRrvvvSANVRGRDLGSFVDD 847
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  847 QAQVAIEKVladTLPTGIEYEWTEvTYQQVLAGNT-MVYVFPLVVLLVFMVLAAQYESLRLPLAIILIVPMTIFSALLGV 925
Cdd:TIGR00914  848 AKKAIAEQV---KLPPGYWITWGG-QFEQLQSATKrLQIVVPVTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFAL 923
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  926 WFVGSDNNIFTQIALIVLVALASKNAILMVEFAKDRHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGA 1005
Cdd:TIGR00914  924 WLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTGA 1003
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 1889614193 1006 EMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLVTNKKEKAQE 1046
Cdd:TIGR00914 1004 EVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRRHKGRK 1044
2A067 TIGR00921
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ...
319-487 2.24e-05

The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273340 [Multi-domain]  Cd Length: 719  Bit Score: 48.68  E-value: 2.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  319 NFPTGVEYDIVYDPTV---FVRGSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINT 395
Cdd:TIGR00921  168 NPPSGKFLDVTGSPAInydIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYA 247
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  396 LSLFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEvTGPIIAIALVLSAVFIPTAFITGLsgQFYKQFALT 475
Cdd:TIGR00921  248 TTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRR-TGRAVLIALLTTSAGFAALALSEF--PMVSEFGLG 324
                          170
                   ....*....|..
gi 1889614193  476 ITISTIISAFNS 487
Cdd:TIGR00921  325 LVAGLITAYLLT 336
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
901-1049 2.49e-05

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 48.32  E-value: 2.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  901 YESLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAI-LMVEFAKDRHDsGLSHLEAILEACRMR 979
Cdd:COG1033    239 FRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIhLLNRYREERRK-GLDKREALREALRKL 317
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  980 LRPILMTSIAFTAGVvpLVLATgAGAEMRHAMGNAVFSGMIGVTVFGLLFTPVFYMLVTNKKEKAQENTH 1049
Cdd:COG1033    318 GPPVLLTSLTTAIGF--LSLLF-SDIPPIRDFGIVAAIGVLLAFLTSLTLLPALLSLLPRPKPKTRRLKK 384
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
365-485 1.06e-04

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 46.39  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  365 WRASIIPLIAVPISLIGTFAVMQWLGVSINTLSLFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPI 444
Cdd:COG1033    629 LRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAI 708
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1889614193  445 IAIALVLSAVFIPTAFItglSGQFYKQFALTITISTIISAF 485
Cdd:COG1033    709 LFTSLTLAAGFGVLLFS---SFPPLADFGLLLALGLLVALL 746
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
361-456 2.29e-04

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 45.24  E-value: 2.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  361 FLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLS--LFGLVLAIGivvddaivvvenV----------ERNIEKGLS 428
Cdd:COG1033    238 FFRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTilVPPLLLAIG------------IdygihllnryREERRKGLD 305
                           90       100
                   ....*....|....*....|....*...
gi 1889614193  429 PLEATRVAMSEVTGPIIAIALVLSAVFI 456
Cdd:COG1033    306 KREALREALRKLGPPVLLTSLTTAIGFL 333
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
903-1044 1.02e-03

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 43.31  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889614193  903 SLRLPLaiILIVPMtIFSALL--GVW-FVGSDNNIFTQIALIVLVALASKNAILMVEFAKDRHDSGLSHLEAILEACRMR 979
Cdd:COG1033    628 SLRLGL--ISLIPN-LLPILLtfGLMgLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGGDLEEAIRRALRTT 704
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1889614193  980 LRPILMTSIAFTAGVVPLVLATGAG-AEMRHAMGNAVFSGMIGVtvfgLLFTPVFYMLVTNKKEKA 1044
Cdd:COG1033    705 GKAILFTSLTLAAGFGVLLFSSFPPlADFGLLLALGLLVALLAA----LLLLPALLLLLDPRIAKK 766
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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