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Conserved domains on  [gi|1889622166|ref|WP_182717244|]
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MULTISPECIES: lipopolysaccharide assembly protein LapB [unclassified Pseudoalteromonas]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 98-370 1.72e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  98 GFIYYNENDLPKAIASFEKVIAEEgiPETlrVSTTFSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQ 177
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELD--PET--VEAHLALGNLYRRRGEYDRAIRIHQK--LLERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 178 LKDYQKGIDNINLAIAQSDSEgkvpkENWLVLQRAMYYSLNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQ 256
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDD-----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 257 LAVLEAAYQQgfltSKSDLR---QLAQVYLYNGLAFKAADVMSKAIESgvAEKSAKNYAFIAEAMVQAKEDNKSVTYFAK 333
Cdd:COG2956   164 IEALEKALKL----DPDCARallLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAELYEKLGDPEEALELLRK 237

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1889622166 334 AAELSDHGKYDQRMAEVLVNLEQFEDAADAARTALDK 370
Cdd:COG2956   238 ALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 98-370 1.72e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  98 GFIYYNENDLPKAIASFEKVIAEEgiPETlrVSTTFSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQ 177
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELD--PET--VEAHLALGNLYRRRGEYDRAIRIHQK--LLERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 178 LKDYQKGIDNINLAIAQSDSEgkvpkENWLVLQRAMYYSLNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQ 256
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDD-----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 257 LAVLEAAYQQgfltSKSDLR---QLAQVYLYNGLAFKAADVMSKAIESgvAEKSAKNYAFIAEAMVQAKEDNKSVTYFAK 333
Cdd:COG2956   164 IEALEKALKL----DPDCARallLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAELYEKLGDPEEALELLRK 237

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1889622166 334 AAELSDHGKYDQRMAEVLVNLEQFEDAADAARTALDK 370
Cdd:COG2956   238 ALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 98-370 1.72e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  98 GFIYYNENDLPKAIASFEKVIAEEgiPETlrVSTTFSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQ 177
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELD--PET--VEAHLALGNLYRRRGEYDRAIRIHQK--LLERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 178 LKDYQKGIDNINLAIAQSDSEgkvpkENWLVLQRAMYYSLNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQ 256
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDD-----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 257 LAVLEAAYQQgfltSKSDLR---QLAQVYLYNGLAFKAADVMSKAIESgvAEKSAKNYAFIAEAMVQAKEDNKSVTYFAK 333
Cdd:COG2956   164 IEALEKALKL----DPDCARallLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAELYEKLGDPEEALELLRK 237

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1889622166 334 AAELSDHGKYDQRMAEVLVNLEQFEDAADAARTALDK 370
Cdd:COG2956   238 ALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 53-336 3.61e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 3.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  53 YSQLARAQKLADDGDAKAGLEALDSIKERSSsmNSYEIammHNFYGFIYYNENDLPKAIASFEKVIAEEgiPETLRVstT 132
Cdd:COG2956     9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDP--ETVEA---HLALGNLYRRRGEYDRAIRIHQKLLERD--PDRAEA--L 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 133 FSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQLKDYQKGIDNINLAIAQSDSEgkvpkENWLVLQRA 212
Cdd:COG2956    80 LELAQDYLKAGLLDRAEELLEK--LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-----AHAYCELAE 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 213 MYYSLNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQLAVLEAAYQQgFLTSKSDLRQLAQVYLYNGLAFKA 291
Cdd:COG2956   153 LYLEQGDYDEAIEALEKALKLDpDCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPALPRLAELYEKLGDPEEA 231

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1889622166 292 ADVMSKAIEsgvAEKSAKNYAFIAEAMVQAKEDNKSVTYFAKAAE 336
Cdd:COG2956   232 LELLRKALE---LDPSDDLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 133-406 3.68e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 3.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 133 FSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQLKDYQKGIDNINLAIAQSdsegkvPKENWLVLQRA 212
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEE--ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD------PDRAEALLELA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 213 -MYYSLNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQLAVLEAAYQQGfLTSKSDLRQLAQVYLYNGLAFK 290
Cdd:COG2956    84 qDYLKAGLLDRAEELLEKLLELDpDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 291 AADVMSKAIEsgVAEKSAKNYAFIAEAMVQAKEDNKSVTYFAKAAELS-DHGKYDQRMAEVLVNLEQFEDAADAARTALD 369
Cdd:COG2956   163 AIEALEKALK--LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALE 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1889622166 370 KGSLDFESNAYVALGMAQYSLQnfDASILAFEQAEKH 406
Cdd:COG2956   241 LDPSDDLLLALADLLERKEGLE--AALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 57-265 1.31e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 1.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  57 ARAQKLADDGDAKAGLEALDSIKERSSSMNSYEIAMMHNFYGFIYYNENDLPKAIASFEKVIAEEGIPETLRVSTTFSLA 136
Cdd:COG3914     6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 137 QLAMANSDYNKVIDFLAKWDAINtkPKTDAYYVLKSQAYYQLKDYQKGIDNINLAIAQSDSEGkvpkENWLVLQRAmYYS 216
Cdd:COG3914    86 LLLQALGRYEEALALYRRALALN--PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA----EAYLNLGEA-LRR 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1889622166 217 LNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQLAVLEAAYQ 265
Cdd:COG3914   159 LGRLEEAIAALRRALELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 255-403 1.52e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 255 QQLAVLEAAYQQGFLTSKSDLRQLAQVYLYNGLAFKAADVMSKAIEsgVAEKSAKNYAFIAEAMVQAKEDNKSVTYFAKA 334
Cdd:COG3914    61 ALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALA--LNPDNAEALFNLGNLLLALGRLEEALAALRRA 138

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 335 AELS-DHGKYDQRMAEVLVNLEQFEDAADAARTALDKGSLDFEsnAYVALGMAQYSLQNFDASILAFEQA 403
Cdd:COG3914   139 LALNpDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE--ALNNLGNALQDLGRLEEAIAAYRRA 206
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 255-403 3.06e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 3.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 255 QQLAVLEAAYQQGFLTSKSDLRQLAQVYLYNGLAFKAADVMSKAIESGVAEKSAKNYAFIAEAMVQAKEDNKSVTYFAKA 334
Cdd:COG3914    25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 335 AELS-DHGKYDQRMAEVLVNLEQFEDAADAARTALDKGSLDFEsnAYVALGMAQYSLQNFDASILAFEQA 403
Cdd:COG3914   105 LALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE--AYLNLGEALRRLGRLEEAIAALRRA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
235-416 9.91e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 9.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 235 NKPEYWVQLGGMYGETGKEKQQLAVLEAAYQQGFLTSKSdLRQLAQVYLYNGLAFKAADVMSKAIEsgVAEKSAKNYAFI 314
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA-LYNLGLAYLRLGRYEEALADYEQALE--LDPDDAEALNNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 315 AEAMVQAKEDNKSVTYFAKAAELS-DHGKYDQRMAEVLVNLEQFEDAADAARTALDKGSLDFEsnAYVALGMAQYSLQNF 393
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDpDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD--ALYNLGIALEKLGRY 160

                         170       180
                  ....*....|....*....|...
gi 1889622166 394 DASILAFEQAEKHKKSQRLAEQW 416
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAAL 183
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 133-266 1.52e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 133 FSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQLKDYQKGIDNINLAIAQSdsegkvPKENWLVLQRA 212
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEK--ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD------PDEPEARLNLG 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1889622166 213 M-YYSLNQTENVVAVLERMVKLY-NKPEYWVQLGGMYGETGKEKQQLAVLEAAYQQ 266
Cdd:COG4783    80 LaLLKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
89-293 1.82e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  89 EIAMMHNFYGFIYYNENDLPKAIASFEKVIA-EEGIPETLrvsttFSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAY 167
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALElDPDDAEAL-----YNLGLAYLRLGRYEEALADYEQ--ALELDPDDAEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 168 YVLKSQAYYQLKDYQKGIDNINLAIAQSdsegkvPKENWLVLQRAM-YYSLNQTENVVAVLERMVKL-YNKPEYWVQLGG 245
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLaLLELGRYDEAIEAYERALELdPDDADALYNLGI 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1889622166 246 MYGETGKEKQQLAVLEAAYQQGFLTSKSDLRQLAQVYLYNGLAFKAAD 293
Cdd:COG0457   153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 273-403 1.06e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 273 SDLRQLAQVYLYNGLAFKAADVMSKAIESGVAEKSAknYAFIAEAMVQAKEDNKSVTYFAKAAELS-DHGKYDQRMAEVL 351
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEA--FALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLAL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1889622166 352 VNLEQFEDAADAARTALDKGSLDFEsnAYVALGMAQYSLQNFDASILAFEQA 403
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDPEHPE--AYLRLARAYRALGRPDEAIAALEKA 132
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 50-195 1.63e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  50 EKVYSQLARAQKLADDGDAKAGLEALDSIKERSSSMNSYeiammHNFYGFIYYNENDLPKAIASFEKVIAEEGIPETLRv 129
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-----FALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR- 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1889622166 130 sttFSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQLKDYQKGIDNINLAIAQS 195
Cdd:COG4783    76 ---LNLGLALLKAGDYDEALALLEK--ALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 98-213 4.37e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 4.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166  98 GFIYYNENDLPKAIASFEKVIAEEgiPETLRVSTtfSLAQLAMANSDYNKVIDFLAKwdAINTKPKTDAYYVLKSQAYYQ 177
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLD--PDNADALL--DLAEALLAAGDTEEAEELLER--ALALDPDNPEALYLLGLAAFQ 97

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1889622166 178 LKDYQKGIDNINLAIAQSDsegkvPKENWLVLQRAM 213
Cdd:COG4235    98 QGDYAEAIAAWQKLLALLP-----ADAPARLLEASI 128
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 275-370 6.61e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 6.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 275 LRQLAQVYLYNGLAFKAADVMSKAIEsgVAEKSAKNYAFIAEAMVQAKEDNKSVTYFAKAAELS-DHGKYDQRMAEVLVN 353
Cdd:COG4783    41 FALLGEILLQLGDLDEAIVLLHEALE--LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRA 118

                          90
                  ....*....|....*..
gi 1889622166 354 LEQFEDAADAARTALDK 370
Cdd:COG4783   119 LGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 306-405 7.99e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.52  E-value: 7.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1889622166 306 KSAKNYAFIAEAMVQAKEDNKSVTYFAKAAELS-DHGKYDQRMAEVLVNLEQFEDAADAARTALDKGSLDFESNAYvaLG 384
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL--LG 92

                          90       100
                  ....*....|....*....|.
gi 1889622166 385 MAQYSLQNFDASILAFEQAEK 405
Cdd:COG4235    93 LAAFQQGDYAEAIAAWQKLLA 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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