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MULTISPECIES: type IV secretion system protein TraC [Aeromonas]
Protein Classification
type IV secretion system protein TraC ( domain architecture ID 11486812 )
type IV secretion system protein TraC is one of the proteins encoded by the transfer (tra) region of the F pilus assembly Type-IV secretion system for plasmid transfer; is required for the assembly of mature F-pilin subunits into extended F pili
List of domain hits
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
27-861
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1543.52
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 27 I LG DLHY PQ L S SM LPYR F YD AD SGL YV N KS T V GFMLEA T PL I GANE H IV QV LD DLVKS KLPR KV P ISV HL V S T K VI GD Q I 106
Cdd:PRK13721 1 V LG EMSF PQ F S RL LPYR D YD QE SGL FM N DT T M GFMLEA I PL N GANE S IV EA LD HMLRT KLPR GI P LCI HL M S S K LV GD R I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 107 DH G IAQ FSW Q G KH AERFN R ITRA F Y HS AA HGR F GS P T -- NLPLTLR D YRV Y ISYC AKA KK LDKTA I T E LSH L L KI V RASL 184
Cdd:PRK13721 81 EY G LRE FSW S G EQ AERFN A ITRA Y Y MR AA LTQ F PL P E gm NLPLTLR H YRV F ISYC SPS KK KSRAD I L E MEN L V KI I RASL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 185 ES A K I A T AQ VD QT AF VN I INQ M A NHRP EQIIATPKN L QQ Y DE LN F QC LDR S TS L E V KP DYL L L T L d AGD G QK S R ARI M NF 264
Cdd:PRK13721 161 QG A S I T T QT VD AQ AF IS I VRE M I NHRP DSLYPKRRQ L DP Y SD LN Y QC VED S FD L K V RA DYL T L G L - REN G RN S T ARI L NF 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 265 M L EQ NP DLFM LWQ GG DN I SNLL S P D L CVAS PF V LT M TLE A E E QV S TQ N EA TR K FF DL D KK ANSP Y G K L FP G V G K Q A Q EWG 344
Cdd:PRK13721 240 H L AK NP EIAF LWQ MA DN Y SNLL N P E L SISC PF I LT L TLE V E D QV K TQ S EA NL K YM DL E KK SKTS Y A K W FP S V E K E A K EWG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 345 S LR EN L N SN S S C LV R YF F N L TAFCPD DE E A AL IC EQ QVI N T F K KNG LH L Y SP V F MQ MRN Y L AMF PF C AGEGL WD DLK AS G 424
Cdd:PRK13721 320 E LR QR L G SN Q S S LV S YF L N I TAFCPD NN E T AL EV EQ DIL N S F R KNG FE L I SP R F NH MRN F L TCL PF M AGEGL FK DLK EA G 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 425 ATS RAES TQAV NL L PLVADN R L CQS GLLAP S YRNQLAF L DIF DT G LG NTNYNMAV S GTSGAGKTGL V QP IL RSVLDSGG S 504
Cdd:PRK13721 400 VVQ RAES FNVA NL M PLVADN P L TPA GLLAP T YRNQLAF I DIF FR G MN NTNYNMAV C GTSGAGKTGL I QP LI RSVLDSGG F 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 505 VW VFDMGDGYKS F CEN V GG T YLDG QN L K FNPFANIT N I HA S G ERIRDQLSV L ASPNG K LDEVHE D LLL RGILNA W KD K QQ 584
Cdd:PRK13721 480 AV VFDMGDGYKS L CEN M GG V YLDG ET L R FNPFANIT D I DQ S A ERIRDQLSV M ASPNG N LDEVHE G LLL QAVRAS W LA K KN 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 585 K ARIDDVV A FLK TE RD LDH YA N S AS I T SR M DE I I E LL GK Y CST G I YGE F FNSD S PSL T DDA N MVVLELGGL Q D K PSLLVA 664
Cdd:PRK13721 560 R ARIDDVV D FLK NA RD SEQ YA D S PT I R SR L DE M I V LL DQ Y TAN G T YGE Y FNSD E PSL R DDA R MVVLELGGL E D R PSLLVA 639
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 665 VMFSLIIYIE DK MYR SD R S LKK VCC IDEGW K LL N FKN D KVG S FIE T GYRT V RRHTG SF ITI S QNI K DFD A D D ASSAA K AA 744
Cdd:PRK13721 640 VMFSLIIYIE NR MYR TP R N LKK LNV IDEGW R LL D FKN H KVG E FIE K GYRT A RRHTG AY ITI T QNI V DFD S D K ASSAA R AA 719
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 745 WGNS AF K VV LKQ D A S EF KI YNQ NR P N QFS E LER LA I SR FG D AKDQWFSSF M L RINDT SS F HRLFVDPLSRAM F SS N G K DF 824
Cdd:PRK13721 720 WGNS SY K II LKQ S A K EF AK YNQ LY P D QFS P LER DM I GG FG A AKDQWFSSF L L QVENH SS W HRLFVDPLSRAM Y SS D G P DF 799
810 820 830
....*....|....*....|....*....|....*..
gi 1890134322 825 EF L QQ R R A EG VD IH D AV YE LA LLR F PD EM EA L AS W HH 861
Cdd:PRK13721 800 EF V QQ K R K EG LS IH E AV WQ LA WKK F GP EM AS L EA W LE 836
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
27-861
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1543.52
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 27 I LG DLHY PQ L S SM LPYR F YD AD SGL YV N KS T V GFMLEA T PL I GANE H IV QV LD DLVKS KLPR KV P ISV HL V S T K VI GD Q I 106
Cdd:PRK13721 1 V LG EMSF PQ F S RL LPYR D YD QE SGL FM N DT T M GFMLEA I PL N GANE S IV EA LD HMLRT KLPR GI P LCI HL M S S K LV GD R I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 107 DH G IAQ FSW Q G KH AERFN R ITRA F Y HS AA HGR F GS P T -- NLPLTLR D YRV Y ISYC AKA KK LDKTA I T E LSH L L KI V RASL 184
Cdd:PRK13721 81 EY G LRE FSW S G EQ AERFN A ITRA Y Y MR AA LTQ F PL P E gm NLPLTLR H YRV F ISYC SPS KK KSRAD I L E MEN L V KI I RASL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 185 ES A K I A T AQ VD QT AF VN I INQ M A NHRP EQIIATPKN L QQ Y DE LN F QC LDR S TS L E V KP DYL L L T L d AGD G QK S R ARI M NF 264
Cdd:PRK13721 161 QG A S I T T QT VD AQ AF IS I VRE M I NHRP DSLYPKRRQ L DP Y SD LN Y QC VED S FD L K V RA DYL T L G L - REN G RN S T ARI L NF 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 265 M L EQ NP DLFM LWQ GG DN I SNLL S P D L CVAS PF V LT M TLE A E E QV S TQ N EA TR K FF DL D KK ANSP Y G K L FP G V G K Q A Q EWG 344
Cdd:PRK13721 240 H L AK NP EIAF LWQ MA DN Y SNLL N P E L SISC PF I LT L TLE V E D QV K TQ S EA NL K YM DL E KK SKTS Y A K W FP S V E K E A K EWG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 345 S LR EN L N SN S S C LV R YF F N L TAFCPD DE E A AL IC EQ QVI N T F K KNG LH L Y SP V F MQ MRN Y L AMF PF C AGEGL WD DLK AS G 424
Cdd:PRK13721 320 E LR QR L G SN Q S S LV S YF L N I TAFCPD NN E T AL EV EQ DIL N S F R KNG FE L I SP R F NH MRN F L TCL PF M AGEGL FK DLK EA G 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 425 ATS RAES TQAV NL L PLVADN R L CQS GLLAP S YRNQLAF L DIF DT G LG NTNYNMAV S GTSGAGKTGL V QP IL RSVLDSGG S 504
Cdd:PRK13721 400 VVQ RAES FNVA NL M PLVADN P L TPA GLLAP T YRNQLAF I DIF FR G MN NTNYNMAV C GTSGAGKTGL I QP LI RSVLDSGG F 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 505 VW VFDMGDGYKS F CEN V GG T YLDG QN L K FNPFANIT N I HA S G ERIRDQLSV L ASPNG K LDEVHE D LLL RGILNA W KD K QQ 584
Cdd:PRK13721 480 AV VFDMGDGYKS L CEN M GG V YLDG ET L R FNPFANIT D I DQ S A ERIRDQLSV M ASPNG N LDEVHE G LLL QAVRAS W LA K KN 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 585 K ARIDDVV A FLK TE RD LDH YA N S AS I T SR M DE I I E LL GK Y CST G I YGE F FNSD S PSL T DDA N MVVLELGGL Q D K PSLLVA 664
Cdd:PRK13721 560 R ARIDDVV D FLK NA RD SEQ YA D S PT I R SR L DE M I V LL DQ Y TAN G T YGE Y FNSD E PSL R DDA R MVVLELGGL E D R PSLLVA 639
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 665 VMFSLIIYIE DK MYR SD R S LKK VCC IDEGW K LL N FKN D KVG S FIE T GYRT V RRHTG SF ITI S QNI K DFD A D D ASSAA K AA 744
Cdd:PRK13721 640 VMFSLIIYIE NR MYR TP R N LKK LNV IDEGW R LL D FKN H KVG E FIE K GYRT A RRHTG AY ITI T QNI V DFD S D K ASSAA R AA 719
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 745 WGNS AF K VV LKQ D A S EF KI YNQ NR P N QFS E LER LA I SR FG D AKDQWFSSF M L RINDT SS F HRLFVDPLSRAM F SS N G K DF 824
Cdd:PRK13721 720 WGNS SY K II LKQ S A K EF AK YNQ LY P D QFS P LER DM I GG FG A AKDQWFSSF L L QVENH SS W HRLFVDPLSRAM Y SS D G P DF 799
810 820 830
....*....|....*....|....*....|....*..
gi 1890134322 825 EF L QQ R R A EG VD IH D AV YE LA LLR F PD EM EA L AS W HH 861
Cdd:PRK13721 800 EF V QQ K R K EG LS IH E AV WQ LA WKK F GP EM AS L EA W LE 836
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
40-846
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 762.25
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 40 LPYR F YD AD SG LYV N KSTV GF M LE A TPL I GA N E HI V QV L DD L VKSK LP RKVP I S V H L VSTKV IG DQI D HGIA QFS WQ G KH 119
Cdd:TIGR02746 2 LPYR A YD EE SG IFM N RHSM GF G LE L TPL S GA D E SL V ES L SS L LRTD LP EGTD I Q V L L WGSPQ IG PFL D RNEE QFS QN G GI 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 120 A E RFN R ITRAF Y HS AA HGR F G sp T N LPL TLRD Y R VYI S YCAKA K KLDKTA I T EL SH L LKIVRAS L E SA KIATAQ VD QTAF 199
Cdd:TIGR02746 82 L E KLA R NRVKY Y LN AA QKG F F -- K N SGV TLRD F R LFL S VSIPF K SPNEDV I Q EL RS L RERIEST L R SA GFGCRR VD AEDL 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 200 VNIINQ M A N HR P EQ I IAT P KNLQQYDE L NF Q CL D RS T S LEV KPDY L ll TL D AG D G Q K - SRA RI MN F MLEQN P DL F M LWQ G 278
Cdd:TIGR02746 160 LSLVRE M L N PD P DS I HPW P ISYDPNQL L RD Q IV D PD T D LEV HEGG L -- EV D HE D N Q G e VKT RI RV F SIKRF P EE F T LWQ T 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 279 G DN I SN LL S P D L CVAS PF V L TM T LEA E E QV STQNE AT R K FF DL D K K A N S PYG K LF P GVG K QAQ E WGS LRE NLN S NSSC LV 358
Cdd:TIGR02746 238 G NL I GD LL N P S L QITC PF L L SF T VRV E D QV KKKAK AT A K AK DL N K Q A K S SMA K WV P SLE K KLK E IKY LRE AIA S GGDS LV 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 359 RYFF N LTA F CPD D EEAAL ic EQQVINT F K KNG LH L YSPVFM Q MRNY LA MF PF CAG EGL WD DLK AS G ATSRAE S TQ AVNLL 438
Cdd:TIGR02746 318 SMYY N VLL F TNP D NLRRD -- VEAAKSS F R KNG FD L AEDKRI Q LQAF LA AL PF NPT EGL FE DLK KA G RVRTLS S AN AVNLL 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 439 PL V AD NRLC - Q SGLL A P SY R N QL AFL D I FD TGL gn TNYN M AV S G T SGAGK TGLV Q PILRSV L DS GG S VWV F D M G DG YK SF 517
Cdd:TIGR02746 396 PL I AD WKGT k G SGLL L P TR R G QL SAF D P FD SDS -- TNYN I AV V G G SGAGK SFFM Q ELIVDN L SR GG K VWV I D V G RS YK KL 473
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 518 CE NV GGTY LDG --- Q N LKF NPF A -- N I T N I HASGER I RDQLSVL ASP N G K L DEVHEDL L LRG IL N AWK DKQQK A R I D DV V 592
Cdd:TIGR02746 474 CE ML GGTY IEF spe S N ICL NPF T gn N V T E I DDEIDQ I TALIALM ASP E G G L SDEQRST L EEA IL A AWK EYGNE A T I T DV Q 553
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 593 AF L KTER D LDHY ansasit S R MDEIIEL L GK Y C S T G I YG EF FN SDS p S L TDDANM VVLEL GG L Q D K P S L LVA V M FSL IIY 672
Cdd:TIGR02746 554 DA L QQLE D DEND ------- P R IKDLGKM L NP Y T S H G V YG RY FN GPN - N L DFSNRF VVLEL EE L E D R P D L QAV V L FSL MVR 625
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 673 I EDK MY RSD R SLK K V C C IDE G W K LL NFK N DKVGS FIETGYR TV R RHT G S FITI S Q N I kdf DADDA S SA A K AA WG NS AF K V 752
Cdd:TIGR02746 626 I TGE MY LTP R KRR K I C I IDE A W S LL DGA N PQAAD FIETGYR RA R KYG G A FITI T Q G I --- EDFYS S PE A R AA YA NS DW K I 702
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 753 V L K Q D A SEFKIYNQNR P NQ FS EL E RLA I SRFGD AK DQ w FS SFML R INDT SS F HRLFVDP L SR AM FS SN G KD FE FLQQR R A 832
Cdd:TIGR02746 703 I L R Q S A ESIAKLKAEN P FT FS PF E KRL I KSLRT AK GA - FS ELLI R SGEG SS V HRLFVDP F SR VL FS TD G PE FE EVEEL R E 781
810
....*....|....
gi 1890134322 833 E G VDIHD A VYE LA L 846
Cdd:TIGR02746 782 Q G LSLEE A IEQ LA Q 795
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
285-834
6.48e-99
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 318.81
E-value: 6.48e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 285 LL S P D L CVASP F VL T MTLEAEEQVSTQNEAT RK FFD L DK K AN S PYGKLFPGVGK QA QEWGSLREN L N S NSSC L VRYFFN L 364
Cdd:COG3451 26 LL D P L L QLPCE F IV T QSFTPLDKDEALKKLK RK RRR L ES K RK S EQALVDDDAES QA EDAEEALDE L Q S GGER L GEVHLT L 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 365 T A F CP D D EE AALIC e QQ V INTFKKN G LH L YSPVFM Q MRNY L AMF P FCAGE glwd D L KASGA T SRA estq AVN L L P LVADN 444
Cdd:COG3451 106 T V F AD D L EE LEEAV - RE V ESALQSA G FT L VRETLN Q EEAF L SSL P GNFDY ---- R L RRRLL T TSN ---- LAA L F P FHSFE 176
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 445 RLCQS G L - L APSYRNQLA F L D IF D tgl G NT N Y N MAVS G T SG A GK TG L VQPI L RSV L DS G GSVWV FD M G DG Y KSFCENV GG 523
Cdd:COG3451 177 LGDPW G I y L LNTRSGTPV F F D FH D --- G LD N G N TLIL G P SG S GK SF L LKLL L LQL L RY G ARIVI FD P G GS Y EILVRAL GG 253
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 524 TY L D --- G QNLKF NPF A n ITNIHASGERIRDQ L SV L ASPN G K - L DEVHEDLLL R GILNAWKDKQQKA R -- ID D VVAF LK T 597
Cdd:COG3451 254 TY I D lsp G SPTGL NPF D - LEDTEEKRDFLLEL L EL L LGRE G E p L TPEERAAID R AVRALYRRADPEE R tt LS D LYEL LK E 332
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 598 ERDLD hyansasitsrmd EIIEL L GK Y CST G I YG EF F NSDSPSLTD DA NM VV LE L GG L Q D K P S L LVA V MFS L IIY I EDKM 677
Cdd:COG3451 333 QPEAK ------------- DLAAR L EP Y TKG G S YG WL F DGPTNLDLS DA RF VV FD L TE L L D N P E L RPP V LLY L LHR I WNRL 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 678 YRSDRSLKKVCC IDE G W K LL nf K N DKVGS F I E TGYR T V R RHT G SF I TIS Q NIK dfd ADDA S SA A K A AWG NSA F K VV L K Q D 757
Cdd:COG3451 400 RKNNDGRPTLIV IDE A W L LL -- D N PAFAE F L E EWLK T L R KYN G AV I FAT Q SVE --- DFLS S PI A E A IIE NSA T K IL L P Q P 474
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1890134322 758 ASEFKI Y NQNR pn QF SE L E RLA I SRF G DA K DQ wfss F MLRINDT S SFH RL FVD P LSR A MF S SNGKDFEF L QQR RAE G 834
Cdd:COG3451 475 KADIED Y AELL -- GL SE R E LEL I RSA G RG K RD ---- F LIKQGNG S VVF RL DLS P EEL A LL S TKPEEVAI L DEL RAE H 545
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
34-271
1.13e-42
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 155.13
E-value: 1.13e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 34 P QL S SM LPY RF YD ADS GL YV N K - ST VGF ML E AT PL I GA N E HIVQV L DD L VKSK LP RKV P ISVH L VSTKV IG DQI D HGIAQ 112
Cdd:pfam11130 1 P SF S DL LPY VA YD PET GL FL N E d GS VGF VF E LS PL G GA D E SVRDT L ES L LSDD LP DGT P VQFL L FASPD IG PYL D RLRDY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 113 - FSW QG K H AERFN R ITRA F YH S AAH G RFGSPTNLP L tl R DY R VYI S YCAKA K KLDK T A I TE L SH L LKIVR ASL E SA KI A T 191
Cdd:pfam11130 81 r LGE QG G H LRAIA R PRGL F LD S GVT G SLSADWRGQ L -- R RF R LVL S RKVPG K ADLP T P I EA L NE L RDRLE ASL R SA GL A A 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 192 AQV D QTAFVNIINQMA N HR P EQIIAT P KNLQQYDELNF Q C LD RSTS L E V KPDY L LL tldag DG QKS R a RIMNFM L EQN P D 271
Cdd:pfam11130 159 RRL D PDDLIAWLRRWL N PD P SASWDP P ADYDPDKDIAE Q I LD SDPR L D V EAGR L YF ----- DG EPH R - AVRVLS L RRF P E 232
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
27-861
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1543.52
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 27 I LG DLHY PQ L S SM LPYR F YD AD SGL YV N KS T V GFMLEA T PL I GANE H IV QV LD DLVKS KLPR KV P ISV HL V S T K VI GD Q I 106
Cdd:PRK13721 1 V LG EMSF PQ F S RL LPYR D YD QE SGL FM N DT T M GFMLEA I PL N GANE S IV EA LD HMLRT KLPR GI P LCI HL M S S K LV GD R I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 107 DH G IAQ FSW Q G KH AERFN R ITRA F Y HS AA HGR F GS P T -- NLPLTLR D YRV Y ISYC AKA KK LDKTA I T E LSH L L KI V RASL 184
Cdd:PRK13721 81 EY G LRE FSW S G EQ AERFN A ITRA Y Y MR AA LTQ F PL P E gm NLPLTLR H YRV F ISYC SPS KK KSRAD I L E MEN L V KI I RASL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 185 ES A K I A T AQ VD QT AF VN I INQ M A NHRP EQIIATPKN L QQ Y DE LN F QC LDR S TS L E V KP DYL L L T L d AGD G QK S R ARI M NF 264
Cdd:PRK13721 161 QG A S I T T QT VD AQ AF IS I VRE M I NHRP DSLYPKRRQ L DP Y SD LN Y QC VED S FD L K V RA DYL T L G L - REN G RN S T ARI L NF 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 265 M L EQ NP DLFM LWQ GG DN I SNLL S P D L CVAS PF V LT M TLE A E E QV S TQ N EA TR K FF DL D KK ANSP Y G K L FP G V G K Q A Q EWG 344
Cdd:PRK13721 240 H L AK NP EIAF LWQ MA DN Y SNLL N P E L SISC PF I LT L TLE V E D QV K TQ S EA NL K YM DL E KK SKTS Y A K W FP S V E K E A K EWG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 345 S LR EN L N SN S S C LV R YF F N L TAFCPD DE E A AL IC EQ QVI N T F K KNG LH L Y SP V F MQ MRN Y L AMF PF C AGEGL WD DLK AS G 424
Cdd:PRK13721 320 E LR QR L G SN Q S S LV S YF L N I TAFCPD NN E T AL EV EQ DIL N S F R KNG FE L I SP R F NH MRN F L TCL PF M AGEGL FK DLK EA G 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 425 ATS RAES TQAV NL L PLVADN R L CQS GLLAP S YRNQLAF L DIF DT G LG NTNYNMAV S GTSGAGKTGL V QP IL RSVLDSGG S 504
Cdd:PRK13721 400 VVQ RAES FNVA NL M PLVADN P L TPA GLLAP T YRNQLAF I DIF FR G MN NTNYNMAV C GTSGAGKTGL I QP LI RSVLDSGG F 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 505 VW VFDMGDGYKS F CEN V GG T YLDG QN L K FNPFANIT N I HA S G ERIRDQLSV L ASPNG K LDEVHE D LLL RGILNA W KD K QQ 584
Cdd:PRK13721 480 AV VFDMGDGYKS L CEN M GG V YLDG ET L R FNPFANIT D I DQ S A ERIRDQLSV M ASPNG N LDEVHE G LLL QAVRAS W LA K KN 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 585 K ARIDDVV A FLK TE RD LDH YA N S AS I T SR M DE I I E LL GK Y CST G I YGE F FNSD S PSL T DDA N MVVLELGGL Q D K PSLLVA 664
Cdd:PRK13721 560 R ARIDDVV D FLK NA RD SEQ YA D S PT I R SR L DE M I V LL DQ Y TAN G T YGE Y FNSD E PSL R DDA R MVVLELGGL E D R PSLLVA 639
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 665 VMFSLIIYIE DK MYR SD R S LKK VCC IDEGW K LL N FKN D KVG S FIE T GYRT V RRHTG SF ITI S QNI K DFD A D D ASSAA K AA 744
Cdd:PRK13721 640 VMFSLIIYIE NR MYR TP R N LKK LNV IDEGW R LL D FKN H KVG E FIE K GYRT A RRHTG AY ITI T QNI V DFD S D K ASSAA R AA 719
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 745 WGNS AF K VV LKQ D A S EF KI YNQ NR P N QFS E LER LA I SR FG D AKDQWFSSF M L RINDT SS F HRLFVDPLSRAM F SS N G K DF 824
Cdd:PRK13721 720 WGNS SY K II LKQ S A K EF AK YNQ LY P D QFS P LER DM I GG FG A AKDQWFSSF L L QVENH SS W HRLFVDPLSRAM Y SS D G P DF 799
810 820 830
....*....|....*....|....*....|....*..
gi 1890134322 825 EF L QQ R R A EG VD IH D AV YE LA LLR F PD EM EA L AS W HH 861
Cdd:PRK13721 800 EF V QQ K R K EG LS IH E AV WQ LA WKK F GP EM AS L EA W LE 836
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
40-846
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 762.25
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 40 LPYR F YD AD SG LYV N KSTV GF M LE A TPL I GA N E HI V QV L DD L VKSK LP RKVP I S V H L VSTKV IG DQI D HGIA QFS WQ G KH 119
Cdd:TIGR02746 2 LPYR A YD EE SG IFM N RHSM GF G LE L TPL S GA D E SL V ES L SS L LRTD LP EGTD I Q V L L WGSPQ IG PFL D RNEE QFS QN G GI 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 120 A E RFN R ITRAF Y HS AA HGR F G sp T N LPL TLRD Y R VYI S YCAKA K KLDKTA I T EL SH L LKIVRAS L E SA KIATAQ VD QTAF 199
Cdd:TIGR02746 82 L E KLA R NRVKY Y LN AA QKG F F -- K N SGV TLRD F R LFL S VSIPF K SPNEDV I Q EL RS L RERIEST L R SA GFGCRR VD AEDL 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 200 VNIINQ M A N HR P EQ I IAT P KNLQQYDE L NF Q CL D RS T S LEV KPDY L ll TL D AG D G Q K - SRA RI MN F MLEQN P DL F M LWQ G 278
Cdd:TIGR02746 160 LSLVRE M L N PD P DS I HPW P ISYDPNQL L RD Q IV D PD T D LEV HEGG L -- EV D HE D N Q G e VKT RI RV F SIKRF P EE F T LWQ T 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 279 G DN I SN LL S P D L CVAS PF V L TM T LEA E E QV STQNE AT R K FF DL D K K A N S PYG K LF P GVG K QAQ E WGS LRE NLN S NSSC LV 358
Cdd:TIGR02746 238 G NL I GD LL N P S L QITC PF L L SF T VRV E D QV KKKAK AT A K AK DL N K Q A K S SMA K WV P SLE K KLK E IKY LRE AIA S GGDS LV 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 359 RYFF N LTA F CPD D EEAAL ic EQQVINT F K KNG LH L YSPVFM Q MRNY LA MF PF CAG EGL WD DLK AS G ATSRAE S TQ AVNLL 438
Cdd:TIGR02746 318 SMYY N VLL F TNP D NLRRD -- VEAAKSS F R KNG FD L AEDKRI Q LQAF LA AL PF NPT EGL FE DLK KA G RVRTLS S AN AVNLL 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 439 PL V AD NRLC - Q SGLL A P SY R N QL AFL D I FD TGL gn TNYN M AV S G T SGAGK TGLV Q PILRSV L DS GG S VWV F D M G DG YK SF 517
Cdd:TIGR02746 396 PL I AD WKGT k G SGLL L P TR R G QL SAF D P FD SDS -- TNYN I AV V G G SGAGK SFFM Q ELIVDN L SR GG K VWV I D V G RS YK KL 473
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 518 CE NV GGTY LDG --- Q N LKF NPF A -- N I T N I HASGER I RDQLSVL ASP N G K L DEVHEDL L LRG IL N AWK DKQQK A R I D DV V 592
Cdd:TIGR02746 474 CE ML GGTY IEF spe S N ICL NPF T gn N V T E I DDEIDQ I TALIALM ASP E G G L SDEQRST L EEA IL A AWK EYGNE A T I T DV Q 553
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 593 AF L KTER D LDHY ansasit S R MDEIIEL L GK Y C S T G I YG EF FN SDS p S L TDDANM VVLEL GG L Q D K P S L LVA V M FSL IIY 672
Cdd:TIGR02746 554 DA L QQLE D DEND ------- P R IKDLGKM L NP Y T S H G V YG RY FN GPN - N L DFSNRF VVLEL EE L E D R P D L QAV V L FSL MVR 625
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 673 I EDK MY RSD R SLK K V C C IDE G W K LL NFK N DKVGS FIETGYR TV R RHT G S FITI S Q N I kdf DADDA S SA A K AA WG NS AF K V 752
Cdd:TIGR02746 626 I TGE MY LTP R KRR K I C I IDE A W S LL DGA N PQAAD FIETGYR RA R KYG G A FITI T Q G I --- EDFYS S PE A R AA YA NS DW K I 702
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 753 V L K Q D A SEFKIYNQNR P NQ FS EL E RLA I SRFGD AK DQ w FS SFML R INDT SS F HRLFVDP L SR AM FS SN G KD FE FLQQR R A 832
Cdd:TIGR02746 703 I L R Q S A ESIAKLKAEN P FT FS PF E KRL I KSLRT AK GA - FS ELLI R SGEG SS V HRLFVDP F SR VL FS TD G PE FE EVEEL R E 781
810
....*....|....
gi 1890134322 833 E G VDIHD A VYE LA L 846
Cdd:TIGR02746 782 Q G LSLEE A IEQ LA Q 795
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
285-834
6.48e-99
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 318.81
E-value: 6.48e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 285 LL S P D L CVASP F VL T MTLEAEEQVSTQNEAT RK FFD L DK K AN S PYGKLFPGVGK QA QEWGSLREN L N S NSSC L VRYFFN L 364
Cdd:COG3451 26 LL D P L L QLPCE F IV T QSFTPLDKDEALKKLK RK RRR L ES K RK S EQALVDDDAES QA EDAEEALDE L Q S GGER L GEVHLT L 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 365 T A F CP D D EE AALIC e QQ V INTFKKN G LH L YSPVFM Q MRNY L AMF P FCAGE glwd D L KASGA T SRA estq AVN L L P LVADN 444
Cdd:COG3451 106 T V F AD D L EE LEEAV - RE V ESALQSA G FT L VRETLN Q EEAF L SSL P GNFDY ---- R L RRRLL T TSN ---- LAA L F P FHSFE 176
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 445 RLCQS G L - L APSYRNQLA F L D IF D tgl G NT N Y N MAVS G T SG A GK TG L VQPI L RSV L DS G GSVWV FD M G DG Y KSFCENV GG 523
Cdd:COG3451 177 LGDPW G I y L LNTRSGTPV F F D FH D --- G LD N G N TLIL G P SG S GK SF L LKLL L LQL L RY G ARIVI FD P G GS Y EILVRAL GG 253
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 524 TY L D --- G QNLKF NPF A n ITNIHASGERIRDQ L SV L ASPN G K - L DEVHEDLLL R GILNAWKDKQQKA R -- ID D VVAF LK T 597
Cdd:COG3451 254 TY I D lsp G SPTGL NPF D - LEDTEEKRDFLLEL L EL L LGRE G E p L TPEERAAID R AVRALYRRADPEE R tt LS D LYEL LK E 332
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 598 ERDLD hyansasitsrmd EIIEL L GK Y CST G I YG EF F NSDSPSLTD DA NM VV LE L GG L Q D K P S L LVA V MFS L IIY I EDKM 677
Cdd:COG3451 333 QPEAK ------------- DLAAR L EP Y TKG G S YG WL F DGPTNLDLS DA RF VV FD L TE L L D N P E L RPP V LLY L LHR I WNRL 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 678 YRSDRSLKKVCC IDE G W K LL nf K N DKVGS F I E TGYR T V R RHT G SF I TIS Q NIK dfd ADDA S SA A K A AWG NSA F K VV L K Q D 757
Cdd:COG3451 400 RKNNDGRPTLIV IDE A W L LL -- D N PAFAE F L E EWLK T L R KYN G AV I FAT Q SVE --- DFLS S PI A E A IIE NSA T K IL L P Q P 474
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1890134322 758 ASEFKI Y NQNR pn QF SE L E RLA I SRF G DA K DQ wfss F MLRINDT S SFH RL FVD P LSR A MF S SNGKDFEF L QQR RAE G 834
Cdd:COG3451 475 KADIED Y AELL -- GL SE R E LEL I RSA G RG K RD ---- F LIKQGNG S VVF RL DLS P EEL A LL S TKPEEVAI L DEL RAE H 545
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
34-271
1.13e-42
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 155.13
E-value: 1.13e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 34 P QL S SM LPY RF YD ADS GL YV N K - ST VGF ML E AT PL I GA N E HIVQV L DD L VKSK LP RKV P ISVH L VSTKV IG DQI D HGIAQ 112
Cdd:pfam11130 1 P SF S DL LPY VA YD PET GL FL N E d GS VGF VF E LS PL G GA D E SVRDT L ES L LSDD LP DGT P VQFL L FASPD IG PYL D RLRDY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 113 - FSW QG K H AERFN R ITRA F YH S AAH G RFGSPTNLP L tl R DY R VYI S YCAKA K KLDK T A I TE L SH L LKIVR ASL E SA KI A T 191
Cdd:pfam11130 81 r LGE QG G H LRAIA R PRGL F LD S GVT G SLSADWRGQ L -- R RF R LVL S RKVPG K ADLP T P I EA L NE L RDRLE ASL R SA GL A A 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 192 AQV D QTAFVNIINQMA N HR P EQIIAT P KNLQQYDELNF Q C LD RSTS L E V KPDY L LL tldag DG QKS R a RIMNFM L EQN P D 271
Cdd:pfam11130 159 RRL D PDDLIAWLRRWL N PD P SASWDP P ADYDPDKDIAE Q I LD SDPR L D V EAGR L YF ----- DG EPH R - AVRVLS L RRF P E 232
DUF5934
pfam19357 Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ...
282-440
1.04e-12
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain]
Cd Length: 172
Bit Score: 67.04
E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 282 I SNLLSPD L CVAS P FVLTMT L EAEE Q VSTQNE A TR KF FDLDKK A N S PYGKLF P GVGK Q AQ EW GSLREN L NSNSS c LVR Y F 361
Cdd:pfam19357 1 I GDMFNDK L RLPC P VATSLC L VYPD Q EAASSK A GY KF MRTTSL A D S KSARFL P QLKE Q SA EW QHVQDE L RQGRK - LVR A F 79
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1890134322 362 FNL TAF C P DDEEA A li C E QQVINTF K KN G LH L YSPVFM Q MRNY LA MF P FCAGE GL WD DL KASGATSRAES T Q A V N LL PL 440
Cdd:pfam19357 80 YSV TAF S P KGKGD A -- H E RTLKSVY K AA G WD L IDERYL Q IMGL LA AM P LTLAD GL AS DL ERMKRFRTMLT T T A A N IA PL 156
HerA
COG0433 Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ...
473-698
1.34e-11
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain]
Cd Length: 388
Bit Score: 67.32
E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 473 T N YNMAVS G TS G A GK TGLV Q PI L RSVLDS G GS V W VFD MGDG Y KSFC E NVGG ------- TYLD G QN L KF NP F anit NIH A S 545
Cdd:COG0433 46 L N RHILIL G AT G S GK SNTL Q VL L EELSRA G VP V L VFD PHGE Y SGLA E PGAE radvgvf DPGA G RP L PI NP W ---- DLF A T 121
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 546 GERIRD qlsv L ASPNGK L DEVHEDL L LRGILN A WKDKQQKARID D VV A F L KTERD L DHYANSA S ------ ITS R MDEIIE 619
Cdd:COG0433 122 ASELGP ---- L LLSRLD L NDTQRGV L REALRL A DDKGLLLLDLK D LI A L L EEGEE L GEEYGNV S aasaga LLR R LESLES 197
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 620 L lgkycstgiy GEF F NSDSPS L T D ---- D ANMV V LE L G GL QDK ps L LVAVMFS L IIYIEDKMYRSDRSLKK ---- V CC ID 691
Cdd:COG0433 198 A ---------- DGL F GEPGLD L E D llrt D GRVT V ID L S GL PEE -- L QSTFVLW L LRELFEARPEVGDADDR klpl V LV ID 265
....*..
gi 1890134322 692 E GWK L LN 698
Cdd:COG0433 266 E AHL L AP 272
P-loop_TraG
pfam19044 TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ...
462-729
6.11e-11
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain]
Cd Length: 413
Bit Score: 65.23
E-value: 6.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 462 FL DI F D TGLGN --- TN Y N MAVS G T SG A GK TGLVQPIL RS VLDS G GS V WVF D M G DG YK SF CE N VGG --- TY LDGQNLK FNP 535
Cdd:pfam19044 14 HV DI S D EPMKK gii TN R N KFIL G P SG S GK SFFTNHMV RS YYEQ G AH V VLV D V G HS YK GL CE L VGG yyf TY SEENPIR FNP 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 536 F anitnihasgerirdqlsv LASPNGK LD EVHEDLLLRGI L NA WK DKQQKARIDDV VA ---------------------- 593
Cdd:pfam19044 94 F ------------------- YIGDGDV LD TEKKESIKTLL L AL WK KDDESFTRSEY VA lsnaltlyyehlekdpdifpcf 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 594 ----- FL KT ------------ E R D L D hyansasitsr M D EIIEL L GK Y CST G IYGEFF N S dspsltd DA N M ------- V V 649
Cdd:pfam19044 155 ntfye FL RD eylkvleedkvk E K D F D ----------- I D NFLYV L RP Y YKG G EFDYLL N A ------- TE N L dllnerf I V 216
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 650 L EL GGLQ D K P S L LVA V mf SL II --- Y I e D KM yrsd R S LK --- K VCC I D E G WK LL nf KNDKVGSF I ETGYR TVR RHT G SF I 723
Cdd:pfam19044 217 F EL DNIK D H P I L FPV V -- TI II mev F I - S KM ---- R K LK gir K MIL I E E A WK AI -- AKEGMAEY I KYLFK TVR KFF G EA I 287
....*.
gi 1890134322 724 TIS Q NI 729
Cdd:pfam19044 288 VVT Q EV 293
DUF87
pfam01935 Helicase HerA, central domain; This entry represents the central domain found in archaeal ...
477-623
3.12e-03
Helicase HerA, central domain; This entry represents the central domain found in archaeal proteins such as DNA double-strand break repair helicase HerA (EC:3.6.4.12). HerA is a helicase which is able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This domain includes the the central RecA-like catalytic core and a flanking four-helix bundle. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Pssm-ID: 376671 [Multi-domain]
Cd Length: 220
Bit Score: 40.04
E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1890134322 477 M A VS G TS G A GK TGL V QPI L RSV L DS - G GS V WV FD M - G DGYKS F CENVGGTY ldgqn LKFN P FANIT n I HASGERIR D QLS 554
Cdd:pfam01935 26 F A IL G ST G S GK SNT V AVL L EEL L EK k G AT V LI FD P h G EYGTL F RDLGAENV ----- NVIT P DPELK - I NPWLLSPE D LAD 99
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1890134322 555 V L ASP N GKLD EV HEDL L LRGILNAWKDKQQ K AR ID DVVAFL kt ERD L DHY A NSAS i TSRM D E I IEL L G K 623
Cdd:pfam01935 100 L L EEL N LPNA EV QRSI L EEALDQLKSEELG K LS ID ELIEKI -- LEE L LTE A AELN - KLSN D A I RRV L D K 165
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
