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Conserved domains on  [gi|1891268920|ref|WP_183577982|]
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MULTISPECIES: branched-chain amino acid transporter permease [Marinobacter]

Protein Classification

branched-chain amino acid transporter permease( domain architecture ID 10004201)

branched-chain amino acid transporter permease similar to Bacillus subtilis AzlD and Corynebacterium glutamicum BrnE which belong to the LIV-E transporter family

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AzlD COG1687
Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];
4-110 2.90e-33

Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];


:

Pssm-ID: 441293  Cd Length: 108  Bit Score: 111.45  E-value: 2.90e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891268920   4 SSYLAAFIAISALATFATRVVPFLFFEKHTEHPLVKHIGRFLPAAVMALLAtVFLQRSADWQAQAPGADALIPALLVVAV 83
Cdd:COG1687     3 TGYLLAAIAVMALATFLTRALPFLLFPRLKPPPLVQYLGRVLPAAIMGILV-VYCLKDVDFAAAPYGLPELIAIAVTVAL 81

                          90       100
                  ....*....|....*....|....*..
gi 1891268920  84 HLWRRNALLSIAAGTAAYMAIQQSGIL 110
Cdd:COG1687    82 HLWKRNALLSIFAGTALYMLLVQLVFV 108
 
Name Accession Description Interval E-value
AzlD COG1687
Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];
4-110 2.90e-33

Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];


Pssm-ID: 441293  Cd Length: 108  Bit Score: 111.45  E-value: 2.90e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891268920   4 SSYLAAFIAISALATFATRVVPFLFFEKHTEHPLVKHIGRFLPAAVMALLAtVFLQRSADWQAQAPGADALIPALLVVAV 83
Cdd:COG1687     3 TGYLLAAIAVMALATFLTRALPFLLFPRLKPPPLVQYLGRVLPAAIMGILV-VYCLKDVDFAAAPYGLPELIAIAVTVAL 81

                          90       100
                  ....*....|....*....|....*..
gi 1891268920  84 HLWRRNALLSIAAGTAAYMAIQQSGIL 110
Cdd:COG1687    82 HLWKRNALLSIFAGTALYMLLVQLVFV 108
AzlD pfam05437
Branched-chain amino acid transport protein (AzlD); This family consists of a number of ...
 11-104 1.87e-14

Branched-chain amino acid transport protein (AzlD); This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.


Pssm-ID: 461652  Cd Length: 99  Bit Score: 63.34  E-value: 1.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891268920  11 IAISALATFATRVVPFLFFEKHTEHPLVKHIGRFLPAAVMALLATVFLQRSADWQAQAPGADALIPALLVVAVHLWRRNA 90
Cdd:pfam05437   5 ILGMALVTYLTRYLPLLLFSRRPLPPWLQRLLRYVPVAVLAALVAPDLLAPGGGLDPSLGNPRLLAALVAVALALLTRNL 84

                          90
                  ....*....|....
gi 1891268920  91 LLSIAAGTAAYMAI 104
Cdd:pfam05437  85 LLSILAGMAVYALL 98
 
Name Accession Description Interval E-value
AzlD COG1687
Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];
4-110 2.90e-33

Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];


Pssm-ID: 441293  Cd Length: 108  Bit Score: 111.45  E-value: 2.90e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891268920   4 SSYLAAFIAISALATFATRVVPFLFFEKHTEHPLVKHIGRFLPAAVMALLAtVFLQRSADWQAQAPGADALIPALLVVAV 83
Cdd:COG1687     3 TGYLLAAIAVMALATFLTRALPFLLFPRLKPPPLVQYLGRVLPAAIMGILV-VYCLKDVDFAAAPYGLPELIAIAVTVAL 81

                          90       100
                  ....*....|....*....|....*..
gi 1891268920  84 HLWRRNALLSIAAGTAAYMAIQQSGIL 110
Cdd:COG1687    82 HLWKRNALLSIFAGTALYMLLVQLVFV 108
AzlD pfam05437
Branched-chain amino acid transport protein (AzlD); This family consists of a number of ...
 11-104 1.87e-14

Branched-chain amino acid transport protein (AzlD); This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.


Pssm-ID: 461652  Cd Length: 99  Bit Score: 63.34  E-value: 1.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891268920  11 IAISALATFATRVVPFLFFEKHTEHPLVKHIGRFLPAAVMALLATVFLQRSADWQAQAPGADALIPALLVVAVHLWRRNA 90
Cdd:pfam05437   5 ILGMALVTYLTRYLPLLLFSRRPLPPWLQRLLRYVPVAVLAALVAPDLLAPGGGLDPSLGNPRLLAALVAVALALLTRNL 84

                          90
                  ....*....|....
gi 1891268920  91 LLSIAAGTAAYMAI 104
Cdd:pfam05437  85 LLSILAGMAVYALL 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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