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Conserved domains on  [gi|1891962778|ref|WP_184178926|]
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hypothetical protein [Rhabdobacter roseus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09039 super family cl32341
peptidoglycan -binding protein;
22-89 2.78e-05

peptidoglycan -binding protein;


The actual alignment was detected with superfamily member PRK09039:

Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 42.26  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891962778  22 LSEKLST--EEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAA--------------QQQLTEATTKLTAAEKQATELQG 85
Cdd:PRK09039   44 LSREISGkdSALDRLNSQIAELADLLSLERQGNQDLQDSVANLraslsaaeaersrlQALLAELAGAGAAAEGRAGELAQ 123


                  ....
gi 1891962778  86 QLSA 89
Cdd:PRK09039  124 ELDS 127
 
Name Accession Description Interval E-value
PRK09039 PRK09039
peptidoglycan -binding protein;
22-89 2.78e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 42.26  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891962778  22 LSEKLST--EEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAA--------------QQQLTEATTKLTAAEKQATELQG 85
Cdd:PRK09039   44 LSREISGkdSALDRLNSQIAELADLLSLERQGNQDLQDSVANLraslsaaeaersrlQALLAELAGAGAAAEGRAGELAQ 123


                  ....
gi 1891962778  86 QLSA 89
Cdd:PRK09039  124 ELDS 127
Surf_Exclu_PgrA TIGR04320
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ...
 15-92 5.46e-05

SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.


Pssm-ID: 275124 [Multi-domain]  Cd Length: 356  Bit Score: 41.64  E-value: 5.46e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1891962778  15 FPSSNQPLSEKLSTEEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAAQQQLTEATTKLTAAEKQATELQGQLSAVTT 92
Cdd:TIGR04320 233 FNDSYIADGNKFDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQA 310
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 7-99 1.27e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891962778   7 LAGILASLFPSSNQPLSEKLSTEEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAAQQQLTEATTKLTAAEKQATELQGQ 86
Cdd:COG4942     5 LLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE 84

                          90
                  ....*....|...
gi 1891962778  87 LSAVTTERDKYKA 99
Cdd:COG4942    85 LAELEKEIAELRA 97
 
Name Accession Description Interval E-value
PRK09039 PRK09039
peptidoglycan -binding protein;
22-89 2.78e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 42.26  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891962778  22 LSEKLST--EEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAA--------------QQQLTEATTKLTAAEKQATELQG 85
Cdd:PRK09039   44 LSREISGkdSALDRLNSQIAELADLLSLERQGNQDLQDSVANLraslsaaeaersrlQALLAELAGAGAAAEGRAGELAQ 123


                  ....
gi 1891962778  86 QLSA 89
Cdd:PRK09039  124 ELDS 127
Surf_Exclu_PgrA TIGR04320
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ...
 15-92 5.46e-05

SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.


Pssm-ID: 275124 [Multi-domain]  Cd Length: 356  Bit Score: 41.64  E-value: 5.46e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1891962778  15 FPSSNQPLSEKLSTEEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAAQQQLTEATTKLTAAEKQATELQGQLSAVTT 92
Cdd:TIGR04320 233 FNDSYIADGNKFDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQA 310
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 7-99 1.27e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1891962778   7 LAGILASLFPSSNQPLSEKLSTEEFNAFSGEVNELNQRLAAQKEGNEKVTADLAAAQQQLTEATTKLTAAEKQATELQGQ 86
Cdd:COG4942     5 LLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE 84

                          90
                  ....*....|...
gi 1891962778  87 LSAVTTERDKYKA 99
Cdd:COG4942    85 LAELEKEIAELRA 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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