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Conserved domains on  [gi|1904543930|ref|WP_188021679|]
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phycobilisome rod-core linker polypeptide [Synechococcus sp. RS9907]

Protein Classification

ferredoxin-NADP reductase( domain architecture ID 10450484)

ferredoxin-NADP reductase (FNR) catalyzes the reversible electron transfer between NADP(H) and ferredoxin or flavodoxin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PBS_linker_poly pfam00427
Phycobilisome Linker polypeptide;
305-427 2.26e-64

Phycobilisome Linker polypeptide;


:

Pssm-ID: 425675 [Multi-domain]  Cd Length: 125  Bit Score: 205.75  E-value: 2.26e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 305 SADQINGLIRATYRQVMGNPHLMESERAMAAESRFAEGYLSTRELVRAIALSPEYSRRFFETNAPYRFVELNFKHFLGRA 384
Cdd:pfam00427   2 SESELQAVIRAAYRQVFGNDHVMESERLTSLESQLRNGEISVREFVRALAKSELYRRRFFEPNSNYRFIELNFKHLLGRA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1904543930 385 PKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPY 427
Cdd:pfam00427  82 PYDQAEIIAYSIILATKGLDAFIDALIDSEEYLEAFGEDTVPY 124
PBS_linker_poly pfam00427
Phycobilisome Linker polypeptide;
81-191 6.83e-53

Phycobilisome Linker polypeptide;


:

Pssm-ID: 425675 [Multi-domain]  Cd Length: 125  Bit Score: 175.71  E-value: 6.83e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNAHVMDNERSAELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAHIS 160
Cdd:pfam00427  14 YRQVFGNDHVMESERLTSLESQLRNGEISVREFVRALAKSELYRRRFFEPNSNYRFIELNFKHLLGRAPYDQAEIIAYSI 93

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1904543930 161 LLASGGHDAVIDFIVDGAEYAEVFGDDVVPY 191
Cdd:pfam00427  94 ILATKGLDAFIDALIDSEEYLEAFGEDTVPY 124
CpcD smart01094
CpcD/allophycocyanin linker domain;
498-547 1.47e-16

CpcD/allophycocyanin linker domain;


:

Pssm-ID: 215022  Cd Length: 51  Bit Score: 73.38  E-value: 1.47e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1904543930  498 KRFRIVVQAQPRGGRQRTPNASYLVSGKDMSSQMKYIHARGGRIVSITEV 547
Cdd:smart01094   2 RVFRIEVTGLRQGGRVRRSNQTYFVPYDRLSAEMQRIHRSGGKIVSITPA 51
 
Name Accession Description Interval E-value
PBS_linker_poly pfam00427
Phycobilisome Linker polypeptide;
305-427 2.26e-64

Phycobilisome Linker polypeptide;


Pssm-ID: 425675 [Multi-domain]  Cd Length: 125  Bit Score: 205.75  E-value: 2.26e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 305 SADQINGLIRATYRQVMGNPHLMESERAMAAESRFAEGYLSTRELVRAIALSPEYSRRFFETNAPYRFVELNFKHFLGRA 384
Cdd:pfam00427   2 SESELQAVIRAAYRQVFGNDHVMESERLTSLESQLRNGEISVREFVRALAKSELYRRRFFEPNSNYRFIELNFKHLLGRA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1904543930 385 PKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPY 427
Cdd:pfam00427  82 PYDQAEIIAYSIILATKGLDAFIDALIDSEEYLEAFGEDTVPY 124
PBS_linker_poly pfam00427
Phycobilisome Linker polypeptide;
81-191 6.83e-53

Phycobilisome Linker polypeptide;


Pssm-ID: 425675 [Multi-domain]  Cd Length: 125  Bit Score: 175.71  E-value: 6.83e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNAHVMDNERSAELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAHIS 160
Cdd:pfam00427  14 YRQVFGNDHVMESERLTSLESQLRNGEISVREFVRALAKSELYRRRFFEPNSNYRFIELNFKHLLGRAPYDQAEIIAYSI 93

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1904543930 161 LLASGGHDAVIDFIVDGAEYAEVFGDDVVPY 191
Cdd:pfam00427  94 ILATKGLDAFIDALIDSEEYLEAFGEDTVPY 124
ApcE COG5693
Phycobilisome linker protein ApcE [Energy production and conversion];
81-432 4.65e-48

Phycobilisome linker protein ApcE [Energy production and conversion];


Pssm-ID: 444407 [Multi-domain]  Cd Length: 904  Bit Score: 179.16  E-value: 4.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNaHVMDNERSAELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAHIS 160
Cdd:COG5693   554 YLQVFGR-DVYEGQRLKVAEIKLENGDITVREFVRILAKSDLFRKLYWTSLYVCKAIEYIHRRLLGRPTYGRQEMNKYFD 632

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 161 LLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFTSAagipnnsfarmatlerGFAISDSAIGSRSQ--LANALARNTT 238
Cdd:COG5693   633 ICSKKGFYALVDAIIDSKEYSEAFGEDTVPYERYLTPG----------------GLSLRSLRVGTIREdgGTKVQKEETP 696

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 239 AYIQLpyganftggaqssglgttaqfaakkrassdgGDSTPIRNDAYVGFGLGQ-----REQ-EVFQRCPGDSADQINGL 312
Cdd:COG5693   697 RFVEL-------------------------------GTVSELRTEPDIQFRINQgvtkqREQtKVFKLTNTSDKVALKTV 745

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 313 IRATYRQVMG---NPHLMESERAmAAESRFAEGYLSTRELVRAIALSPEYSRRFFetnAPY---RFVELNFKHFLGRAPK 386
Cdd:COG5693   746 IRAAYRQIFErdiEPYIVKNEFT-ALESKLGNGEITVKEFIEGLGCSDLYIKEFY---TPYpntKVIELGTKHFLGRAPL 821

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1904543930 387 SQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILT 432
Cdd:COG5693   822 DQKEIRKYNQILATQGIKAFIGAMVNSMEYAQVFGEDTVPYRRFPT 867
apcE CHL00091
phycobillisome linker protein
 81-432 5.98e-44

phycobillisome linker protein


Pssm-ID: 164495 [Multi-domain]  Cd Length: 877  Bit Score: 167.31  E-value: 5.98e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNaHVMDNERSA--ELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAH 158
Cdd:CHL00091  528 YLRVFGR-EVYEEEKIWlkPLENELRRRQISVREFVRQLAKSSVFRSLYWSPLYICKAIEYIHNRLLGRPTYGRQEINKY 606

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 159 ISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRsFTSAAGIPNNSFarmatlERGFAISDSAIGSRSQLANalarntt 238
Cdd:CHL00091  607 FDIAYKSGFYALIDALIDSPEYIETFGNNTVPYER-YSTPAGLALRIL------RLSIIDSKSAKVISSKEAR------- 672

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 239 aYIQLpyganftggaqssglGTtaqfAAKKRASSDggdstpIRNDAYVGFGLGQREQEVFQRCPGDSADQINGLIRATYR 318
Cdd:CHL00091  673 -FIEL---------------GQ----AKESRSSSS------IQSRIQQGVSLLRDQSVVFKVNSHSDKENLEQVLRAAYR 726

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 319 QVMG---NPHLMESErAMAAESRFAEGYLSTRELVRAIALSPEYSRRFFETNAPYRFVELNFKHFLGRAPKSQAELSEHI 395
Cdd:CHL00091  727 QIFErdlNSFIIGGE-FLDIESAFLNGQISVRELVEKLGSSSLYGKEFYQPYPNTKVIELGTKHFLGRAPNNQAEIRYYN 805

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1904543930 396 QILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILT 432
Cdd:CHL00091  806 QILASQGLAAFISTLVNSKEYRSVFGEDTVPYRRFPT 842
ApcE COG5693
Phycobilisome linker protein ApcE [Energy production and conversion];
81-203 7.10e-25

Phycobilisome linker protein ApcE [Energy production and conversion];


Pssm-ID: 444407 [Multi-domain]  Cd Length: 904  Bit Score: 109.44  E-value: 7.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYG---NAHVMDNERSAeLEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSA 157
Cdd:COG5693   750 YRQIFErdiEPYIVKNEFTA-LESKLGNGEITVKEFIEGLGCSDLYIKEFYTPYPNTKVIELGTKHFLGRAPLDQKEIRK 828

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1904543930 158 HISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFT-SAAGIPN 203
Cdd:COG5693   829 YNQILATQGIKAFIGAMVNSMEYAQVFGEDTVPYRRFPTlPAANFPN 875
apcE CHL00091
phycobillisome linker protein
 81-203 2.67e-19

phycobillisome linker protein


Pssm-ID: 164495 [Multi-domain]  Cd Length: 877  Bit Score: 91.81  E-value: 2.67e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYG---NAHVMDNERSaELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSA 157
Cdd:CHL00091  725 YRQIFErdlNSFIIGGEFL-DIESAFLNGQISVRELVEKLGSSSLYGKEFYQPYPNTKVIELGTKHFLGRAPNNQAEIRY 803

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1904543930 158 HISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFT-SAAGIPN 203
Cdd:CHL00091  804 YNQILASQGLAAFISTLVNSKEYRSVFGEDTVPYRRFPTlPAANFPN 850
CpcD smart01094
CpcD/allophycocyanin linker domain;
498-547 1.47e-16

CpcD/allophycocyanin linker domain;


Pssm-ID: 215022  Cd Length: 51  Bit Score: 73.38  E-value: 1.47e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1904543930  498 KRFRIVVQAQPRGGRQRTPNASYLVSGKDMSSQMKYIHARGGRIVSITEV 547
Cdd:smart01094   2 RVFRIEVTGLRQGGRVRRSNQTYFVPYDRLSAEMQRIHRSGGKIVSITPA 51
CpcD pfam01383
CpcD/allophycocyanin linker domain;
498-545 4.66e-08

CpcD/allophycocyanin linker domain;


Pssm-ID: 460183  Cd Length: 53  Bit Score: 49.44  E-value: 4.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1904543930 498 KRFRIVVQAQPRGGRQRTP-----NASYLVSGKDMSSQMKYIHARGGRIVSIT 545
Cdd:pfam01383   1 RVFRIEVTGLSQGGTDRTPrvrrsNSVYLVPYERLSQEMQRINRQGGKIVSIT 53
 
Name Accession Description Interval E-value
PBS_linker_poly pfam00427
Phycobilisome Linker polypeptide;
305-427 2.26e-64

Phycobilisome Linker polypeptide;


Pssm-ID: 425675 [Multi-domain]  Cd Length: 125  Bit Score: 205.75  E-value: 2.26e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 305 SADQINGLIRATYRQVMGNPHLMESERAMAAESRFAEGYLSTRELVRAIALSPEYSRRFFETNAPYRFVELNFKHFLGRA 384
Cdd:pfam00427   2 SESELQAVIRAAYRQVFGNDHVMESERLTSLESQLRNGEISVREFVRALAKSELYRRRFFEPNSNYRFIELNFKHLLGRA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1904543930 385 PKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPY 427
Cdd:pfam00427  82 PYDQAEIIAYSIILATKGLDAFIDALIDSEEYLEAFGEDTVPY 124
PBS_linker_poly pfam00427
Phycobilisome Linker polypeptide;
81-191 6.83e-53

Phycobilisome Linker polypeptide;


Pssm-ID: 425675 [Multi-domain]  Cd Length: 125  Bit Score: 175.71  E-value: 6.83e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNAHVMDNERSAELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAHIS 160
Cdd:pfam00427  14 YRQVFGNDHVMESERLTSLESQLRNGEISVREFVRALAKSELYRRRFFEPNSNYRFIELNFKHLLGRAPYDQAEIIAYSI 93

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1904543930 161 LLASGGHDAVIDFIVDGAEYAEVFGDDVVPY 191
Cdd:pfam00427  94 ILATKGLDAFIDALIDSEEYLEAFGEDTVPY 124
ApcE COG5693
Phycobilisome linker protein ApcE [Energy production and conversion];
81-432 4.65e-48

Phycobilisome linker protein ApcE [Energy production and conversion];


Pssm-ID: 444407 [Multi-domain]  Cd Length: 904  Bit Score: 179.16  E-value: 4.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNaHVMDNERSAELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAHIS 160
Cdd:COG5693   554 YLQVFGR-DVYEGQRLKVAEIKLENGDITVREFVRILAKSDLFRKLYWTSLYVCKAIEYIHRRLLGRPTYGRQEMNKYFD 632

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 161 LLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFTSAagipnnsfarmatlerGFAISDSAIGSRSQ--LANALARNTT 238
Cdd:COG5693   633 ICSKKGFYALVDAIIDSKEYSEAFGEDTVPYERYLTPG----------------GLSLRSLRVGTIREdgGTKVQKEETP 696

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 239 AYIQLpyganftggaqssglgttaqfaakkrassdgGDSTPIRNDAYVGFGLGQ-----REQ-EVFQRCPGDSADQINGL 312
Cdd:COG5693   697 RFVEL-------------------------------GTVSELRTEPDIQFRINQgvtkqREQtKVFKLTNTSDKVALKTV 745

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 313 IRATYRQVMG---NPHLMESERAmAAESRFAEGYLSTRELVRAIALSPEYSRRFFetnAPY---RFVELNFKHFLGRAPK 386
Cdd:COG5693   746 IRAAYRQIFErdiEPYIVKNEFT-ALESKLGNGEITVKEFIEGLGCSDLYIKEFY---TPYpntKVIELGTKHFLGRAPL 821

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1904543930 387 SQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILT 432
Cdd:COG5693   822 DQKEIRKYNQILATQGIKAFIGAMVNSMEYAQVFGEDTVPYRRFPT 867
apcE CHL00091
phycobillisome linker protein
 81-432 5.98e-44

phycobillisome linker protein


Pssm-ID: 164495 [Multi-domain]  Cd Length: 877  Bit Score: 167.31  E-value: 5.98e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYGNaHVMDNERSA--ELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSAH 158
Cdd:CHL00091  528 YLRVFGR-EVYEEEKIWlkPLENELRRRQISVREFVRQLAKSSVFRSLYWSPLYICKAIEYIHNRLLGRPTYGRQEINKY 606

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 159 ISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRsFTSAAGIPNNSFarmatlERGFAISDSAIGSRSQLANalarntt 238
Cdd:CHL00091  607 FDIAYKSGFYALIDALIDSPEYIETFGNNTVPYER-YSTPAGLALRIL------RLSIIDSKSAKVISSKEAR------- 672

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 239 aYIQLpyganftggaqssglGTtaqfAAKKRASSDggdstpIRNDAYVGFGLGQREQEVFQRCPGDSADQINGLIRATYR 318
Cdd:CHL00091  673 -FIEL---------------GQ----AKESRSSSS------IQSRIQQGVSLLRDQSVVFKVNSHSDKENLEQVLRAAYR 726

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 319 QVMG---NPHLMESErAMAAESRFAEGYLSTRELVRAIALSPEYSRRFFETNAPYRFVELNFKHFLGRAPKSQAELSEHI 395
Cdd:CHL00091  727 QIFErdlNSFIIGGE-FLDIESAFLNGQISVRELVEKLGSSSLYGKEFYQPYPNTKVIELGTKHFLGRAPNNQAEIRYYN 805

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1904543930 396 QILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILT 432
Cdd:CHL00091  806 QILASQGLAAFISTLVNSKEYRSVFGEDTVPYRRFPT 842
ApcE COG5693
Phycobilisome linker protein ApcE [Energy production and conversion];
81-435 1.03e-35

Phycobilisome linker protein ApcE [Energy production and conversion];


Pssm-ID: 444407 [Multi-domain]  Cd Length: 904  Bit Score: 142.57  E-value: 1.03e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYgnahvmdnERS---------AELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVD 151
Cdd:COG5693   293 YRQVF--------ERDitrayslsiSDLESKVKNGDISMKEFIRRLGKSPLYRKQFYEPFINSRALELAFRHFLGRGPSS 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 152 QAEMSAHISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFTSAA------GIPNNSFARMATLER------GFAIS 219
Cdd:COG5693   365 REEVQKYFSIVSKGGLPALVDALVDSQEYSDYFGEETVPYLRGLGQEAqecrnwGMQQDLFNYSAPFRKvpqfitTFAAY 444

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 220 DSAIGSRSQLANAlarNTTAYIQlpYGANF---TGGAQSSglgtTAQFAAKKR-------ASSDGGDSTPIRNDAYVGfG 289
Cdd:COG5693   445 DQPLPDQHVYGSG---NDPLEIQ--FGAIFpkeTRNPSTS----PAPFGKDTRrilihrgPGINNQNSNPGARGVAPG-S 514

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 290 LGQReqeVFQ--RCPGDSADQING-------------LIRATYRQVMGNpHLMESERAMAAESRFAEGYLSTRELVRAIA 354
Cdd:COG5693   515 LGPK---VFKldQLPGTSGKGSSNgasvkfsesstqaVIRAAYLQVFGR-DVYEGQRLKVAEIKLENGDITVREFVRILA 590

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 355 LSPEYSRRFFETNAPYRFVELNFKHFLGRAPKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILTEE 434
Cdd:COG5693   591 KSDLFRKLYWTSLYVCKAIEYIHRRLLGRPTYGRQEMNKYFDICSKKGFYALVDAIIDSKEYSEAFGEDTVPYERYLTPG 670


                  .
gi 1904543930 435 G 435
Cdd:COG5693   671 G 671
apcE CHL00091
phycobillisome linker protein
 81-437 2.65e-32

phycobillisome linker protein


Pssm-ID: 164495 [Multi-domain]  Cd Length: 877  Bit Score: 132.26  E-value: 2.65e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVY----GNAHVMDNersAELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMS 156
Cdd:CHL00091  280 YRQIFerdiAKAYGLSL---SELESKVKNGQISIKEFIRALGKSEIYRKQFYEPFVNSRVLELAFRHFLGRGPSSLEEFQ 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 157 AHISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFTSAAGIPNNSFARMATLERgfaisdsaigsrsqlaNALARN 236
Cdd:CHL00091  357 KYFAILSSRGLDGLVDALLNSKEYADYFGEETVPYLRQLGEEAQECRNWGAQIDLLNY----------------SAPFRK 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 237 TTAYIQLpyganFTGGAQS------SGLGT---TAQFAA---------KKRASSDGGDSTPIRndAYVGFGL-------- 290
Cdd:CHL00091  421 VPQFITL-----FSDYKQPlpdqhpYGRGNdplSIQFGAifpketvnpRKRPALFGKDTRRIL--VRRGPGIynqisnpn 493

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 291 ------GQREQEVFQRCPGDSADQ--INGLIRATYRQVMGNPHLMESERAMAA-ESRFAEGYLSTRELVRAIALSPEYSR 361
Cdd:CHL00091  494 arqkspGSLGPKIFKLSNVLSKNEtsLEVIIKAAYLRVFGREVYEEEKIWLKPlENELRRRQISVREFVRQLAKSSVFRS 573

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1904543930 362 RFFETNAPYRFVELNFKHFLGRAPKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILTEEGRA 437
Cdd:CHL00091  574 LYWSPLYICKAIEYIHNRLLGRPTYGRQEINKYFDIAYKSGFYALIDALIDSPEYIETFGNNTVPYERYSTPAGLA 649
ApcE COG5693
Phycobilisome linker protein ApcE [Energy production and conversion];
81-203 7.10e-25

Phycobilisome linker protein ApcE [Energy production and conversion];


Pssm-ID: 444407 [Multi-domain]  Cd Length: 904  Bit Score: 109.44  E-value: 7.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYG---NAHVMDNERSAeLEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSA 157
Cdd:COG5693   750 YRQIFErdiEPYIVKNEFTA-LESKLGNGEITVKEFIEGLGCSDLYIKEFYTPYPNTKVIELGTKHFLGRAPLDQKEIRK 828

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1904543930 158 HISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFT-SAAGIPN 203
Cdd:COG5693   829 YNQILATQGIKAFIGAMVNSMEYAQVFGEDTVPYRRFPTlPAANFPN 875
ApcE COG5693
Phycobilisome linker protein ApcE [Energy production and conversion];
302-442 9.27e-25

Phycobilisome linker protein ApcE [Energy production and conversion];


Pssm-ID: 444407 [Multi-domain]  Cd Length: 904  Bit Score: 109.06  E-value: 9.27e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 302 PGDSADQINGLIRATYRQVMgnphlmESE--RAMAA-----ESRFAEGYLSTRELVRAIALSPEYSRRFFETNAPYRFVE 374
Cdd:COG5693   278 PGLSASEKNEVVKAAYRQVF------ERDitRAYSLsisdlESKVKNGDISMKEFIRRLGKSPLYRKQFYEPFINSRALE 351

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1904543930 375 LNFKHFLGRAPKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILTEEgrAQVAFN 442
Cdd:COG5693   352 LAFRHFLGRGPSSREEVQKYFSIVSKGGLPALVDALVDSQEYSDYFGEETVPYLRGLGQE--AQECRN 417
apcE CHL00091
phycobillisome linker protein
 298-442 6.36e-24

phycobillisome linker protein


Pssm-ID: 164495 [Multi-domain]  Cd Length: 877  Bit Score: 106.45  E-value: 6.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930 298 FQRCPGDSADQINGLIRATYRQVMgnphlmesERAMAA---------ESRFAEGYLSTRELVRAIALSPEYSRRFFETNA 368
Cdd:CHL00091  261 FVMKPNLSSTEKNQVIKACYRQIF--------ERDIAKayglslselESKVKNGQISIKEFIRALGKSEIYRKQFYEPFV 332

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1904543930 369 PYRFVELNFKHFLGRAPKSQAELSEHIQILANDGYEAEISSYLDSAEYQNTFGEDTVPYMRILTEEgrAQVAFN 442
Cdd:CHL00091  333 NSRVLELAFRHFLGRGPSSLEEFQKYFAILSSRGLDGLVDALLNSKEYADYFGEETVPYLRQLGEE--AQECRN 404
apcE CHL00091
phycobillisome linker protein
 81-203 2.67e-19

phycobillisome linker protein


Pssm-ID: 164495 [Multi-domain]  Cd Length: 877  Bit Score: 91.81  E-value: 2.67e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904543930  81 YRQVYG---NAHVMDNERSaELEARYGNGELTTRDFVRGLAKTSFYKARFFEGVAPQRGIELNLKHLLGRPPVDQAEMSA 157
Cdd:CHL00091  725 YRQIFErdlNSFIIGGEFL-DIESAFLNGQISVRELVEKLGSSSLYGKEFYQPYPNTKVIELGTKHFLGRAPNNQAEIRY 803

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1904543930 158 HISLLASGGHDAVIDFIVDGAEYAEVFGDDVVPYTRSFT-SAAGIPN 203
Cdd:CHL00091  804 YNQILASQGLAAFISTLVNSKEYRSVFGEDTVPYRRFPTlPAANFPN 850
CpcD smart01094
CpcD/allophycocyanin linker domain;
498-547 1.47e-16

CpcD/allophycocyanin linker domain;


Pssm-ID: 215022  Cd Length: 51  Bit Score: 73.38  E-value: 1.47e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1904543930  498 KRFRIVVQAQPRGGRQRTPNASYLVSGKDMSSQMKYIHARGGRIVSITEV 547
Cdd:smart01094   2 RVFRIEVTGLRQGGRVRRSNQTYFVPYDRLSAEMQRIHRSGGKIVSITPA 51
CpcD pfam01383
CpcD/allophycocyanin linker domain;
498-545 4.66e-08

CpcD/allophycocyanin linker domain;


Pssm-ID: 460183  Cd Length: 53  Bit Score: 49.44  E-value: 4.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1904543930 498 KRFRIVVQAQPRGGRQRTP-----NASYLVSGKDMSSQMKYIHARGGRIVSIT 545
Cdd:pfam01383   1 RVFRIEVTGLSQGGTDRTPrvrrsNSVYLVPYERLSQEMQRINRQGGKIVSIT 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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