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Conserved domains on  [gi|1906347511|ref|WP_189116003|]
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hypothetical protein [Pilimelia terevasa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ASH super family cl48275
Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin; The ASH domain or N-terminal ...
 184-267 3.72e-07

Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin; The ASH domain or N-terminal domain of abnormal spindle-like microcephaly-associated protein are found in proteins associated with cilia, flagella, the centrosome and the Golgi complex. The domain is also found in Hydin and OCRL whose deficiencies are associated with hydrocephalus and Lowe oculocerebrorenal syndrome (OCRL), respectively. The fact that Human ASPM protein carries an ASH domain indicates possible roles for ASPM in sperm flagellar or in ependymal cells' cilia. The presence of ASH in centrosomal and ciliary proteins indicates that ASPM may possess roles not only in mitotic spindle regulation, but also in ciliary and flagellar function.


The actual alignment was detected with superfamily member pfam15780:

Pssm-ID: 464865 [Multi-domain]  Cd Length: 98  Bit Score: 47.27  E-value: 3.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906347511 184 PATLEF-DAASGVEQRRTVAVTNEGRLPFVVDAGKVQGPGDGFAVTQLPGKILGGDAGTIEVSFRPSQPGRYRGSLTVTV 262
Cdd:pfam15780  11 QPFVCFgDVPVGTSAERLLTVVNPSEEPAEVKVSKVPAPTKGFSVSPLEFTVQPGESQTLTVTWTPTEEGAVRETLQFTV 90


                  ....*
gi 1906347511 263 AGSTR 267
Cdd:pfam15780  91 NDVGK 95
 
Name Accession Description Interval E-value
ASH pfam15780
Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin; The ASH domain or N-terminal ...
 184-267 3.72e-07

Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin; The ASH domain or N-terminal domain of abnormal spindle-like microcephaly-associated protein are found in proteins associated with cilia, flagella, the centrosome and the Golgi complex. The domain is also found in Hydin and OCRL whose deficiencies are associated with hydrocephalus and Lowe oculocerebrorenal syndrome (OCRL), respectively. The fact that Human ASPM protein carries an ASH domain indicates possible roles for ASPM in sperm flagellar or in ependymal cells' cilia. The presence of ASH in centrosomal and ciliary proteins indicates that ASPM may possess roles not only in mitotic spindle regulation, but also in ciliary and flagellar function.


Pssm-ID: 464865 [Multi-domain]  Cd Length: 98  Bit Score: 47.27  E-value: 3.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906347511 184 PATLEF-DAASGVEQRRTVAVTNEGRLPFVVDAGKVQGPGDGFAVTQLPGKILGGDAGTIEVSFRPSQPGRYRGSLTVTV 262
Cdd:pfam15780  11 QPFVCFgDVPVGTSAERLLTVVNPSEEPAEVKVSKVPAPTKGFSVSPLEFTVQPGESQTLTVTWTPTEEGAVRETLQFTV 90


                  ....*
gi 1906347511 263 AGSTR 267
Cdd:pfam15780  91 NDVGK 95
choice_anch_D NF012200
choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long ...
 167-261 7.81e-03

choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.


Pssm-ID: 467954 [Multi-domain]  Cd Length: 107  Bit Score: 35.29  E-value: 7.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906347511 167 IVGPGTPVPGGDgFTLEPATLEF-DAASGVEQRRTVAVTNEGRLPFVVDAGKVQGPGDG-FAVTQ-LPGKILGGDAGTIE 243
Cdd:NF012200    5 LTGNGVAAADPS-ITPSPASIDFgNVRVGDTASQTVTITNTGTAALTIEGLTISGTNAGdFTVSGnSPTTLAAGGSCTLT 83

                          90
                  ....*....|....*...
gi 1906347511 244 VSFRPSQPGRYRGSLTVT 261
Cdd:NF012200   84 VTFDPTAAGARSGTLTIA 101
 
Name Accession Description Interval E-value
ASH pfam15780
Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin; The ASH domain or N-terminal ...
 184-267 3.72e-07

Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin; The ASH domain or N-terminal domain of abnormal spindle-like microcephaly-associated protein are found in proteins associated with cilia, flagella, the centrosome and the Golgi complex. The domain is also found in Hydin and OCRL whose deficiencies are associated with hydrocephalus and Lowe oculocerebrorenal syndrome (OCRL), respectively. The fact that Human ASPM protein carries an ASH domain indicates possible roles for ASPM in sperm flagellar or in ependymal cells' cilia. The presence of ASH in centrosomal and ciliary proteins indicates that ASPM may possess roles not only in mitotic spindle regulation, but also in ciliary and flagellar function.


Pssm-ID: 464865 [Multi-domain]  Cd Length: 98  Bit Score: 47.27  E-value: 3.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906347511 184 PATLEF-DAASGVEQRRTVAVTNEGRLPFVVDAGKVQGPGDGFAVTQLPGKILGGDAGTIEVSFRPSQPGRYRGSLTVTV 262
Cdd:pfam15780  11 QPFVCFgDVPVGTSAERLLTVVNPSEEPAEVKVSKVPAPTKGFSVSPLEFTVQPGESQTLTVTWTPTEEGAVRETLQFTV 90


                  ....*
gi 1906347511 263 AGSTR 267
Cdd:pfam15780  91 NDVGK 95
choice_anch_D NF012200
choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long ...
 167-261 7.81e-03

choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.


Pssm-ID: 467954 [Multi-domain]  Cd Length: 107  Bit Score: 35.29  E-value: 7.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906347511 167 IVGPGTPVPGGDgFTLEPATLEF-DAASGVEQRRTVAVTNEGRLPFVVDAGKVQGPGDG-FAVTQ-LPGKILGGDAGTIE 243
Cdd:NF012200    5 LTGNGVAAADPS-ITPSPASIDFgNVRVGDTASQTVTITNTGTAALTIEGLTISGTNAGdFTVSGnSPTTLAAGGSCTLT 83

                          90
                  ....*....|....*...
gi 1906347511 244 VSFRPSQPGRYRGSLTVT 261
Cdd:NF012200   84 VTFDPTAAGARSGTLTIA 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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