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Conserved domains on  [gi|1918264435|ref|WP_193006710|]
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MULTISPECIES: type IV pilus secretin PilQ family protein [Psychrobacter]

Protein Classification

type IV pilus secretin PilQ family protein( domain architecture ID 11494405)

type IV pilus secretin PilQ family protein such as Francisella tularensis PilQ, which could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA, and Haemophilus influenzae competence protein E (ComE), which is a DNA transformation protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 223-782 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 690.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 223 GLSAVNFAAGNNGGGNVSIALANEAIPVDVQRQGNKLVVRLTGSTVPRNLLRRLNIN--SGLVSSIDTKNQGQNGVITIN 300
Cdd:COG4796    41 AIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQQGGKLVVDFLNTSLPEELRRRLDVTdfATPVQSIDAFQQGDNVRLVIE 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 301 MVDDYEYQAYQSGNQLNISIN--KPELLREPTLEEKVYSGERLSMEFQDVEIRSVLDILAQFTEMNIVASDSVSGNITLR 378
Cdd:COG4796   121 PRGDWEYSAYQTDNQFVVEVKplTEDENKLAQGGKKGYTGEKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 379 LINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQEARELEAQQAVESFAPLRTEYIRLSYAKAQDVLTLISqgsg 458
Cdd:COG4796   201 LKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKLELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLK---- 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 459 assggnsgianrvDDNNTLLSNRGTVTVDERTNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGV 538
Cdd:COG4796   277 -------------GQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGV 343

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 539 RWGILSNGAANNRNLLVGGSnqtlwdlkdfdvetttvngqTVSYPSYDITRPDNLNVDLGVANPAGSIAFGLLSMSD-VM 617
Cdd:COG4796   344 RWGGSGANGTGNNRGGIGGS--------------------LNGTTAGTPLLPDGLNVNLPAANPAGSLGLTLAKLGGgRL 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 618 LDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVITN 697
Cdd:COG4796   404 LDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLDVSK 483

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 698 GTP--TIINNQVAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPK 775
Cdd:COG4796   484 DSPgeTVAGGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPR 563


                  ....*..
gi 1918264435 776 LINDGIS 782
Cdd:COG4796   564 IVKDALA 570
AMIN super family cl46341
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 64-133 9.86e-03

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


The actual alignment was detected with superfamily member pfam11741:

Pssm-ID: 480681  Cd Length: 96  Bit Score: 36.13  E-value: 9.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1918264435  64 PVLPAAYQLDDPSRLVLDFEQVQNGLASRFNEYNVGVVNDVT-TLSSDSTTRLIIGLKQSGNYTTAIEGND 133
Cdd:pfam11741  19 GEKYQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGIKSVRvGQFDPNTVRVVVDLDGSVLPQVPVFKSG 89
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 223-782 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 690.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 223 GLSAVNFAAGNNGGGNVSIALANEAIPVDVQRQGNKLVVRLTGSTVPRNLLRRLNIN--SGLVSSIDTKNQGQNGVITIN 300
Cdd:COG4796    41 AIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQQGGKLVVDFLNTSLPEELRRRLDVTdfATPVQSIDAFQQGDNVRLVIE 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 301 MVDDYEYQAYQSGNQLNISIN--KPELLREPTLEEKVYSGERLSMEFQDVEIRSVLDILAQFTEMNIVASDSVSGNITLR 378
Cdd:COG4796   121 PRGDWEYSAYQTDNQFVVEVKplTEDENKLAQGGKKGYTGEKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 379 LINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQEARELEAQQAVESFAPLRTEYIRLSYAKAQDVLTLISqgsg 458
Cdd:COG4796   201 LKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKLELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLK---- 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 459 assggnsgianrvDDNNTLLSNRGTVTVDERTNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGV 538
Cdd:COG4796   277 -------------GQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGV 343

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 539 RWGILSNGAANNRNLLVGGSnqtlwdlkdfdvetttvngqTVSYPSYDITRPDNLNVDLGVANPAGSIAFGLLSMSD-VM 617
Cdd:COG4796   344 RWGGSGANGTGNNRGGIGGS--------------------LNGTTAGTPLLPDGLNVNLPAANPAGSLGLTLAKLGGgRL 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 618 LDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVITN 697
Cdd:COG4796   404 LDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLDVSK 483

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 698 GTP--TIINNQVAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPK 775
Cdd:COG4796   484 DSPgeTVAGGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPR 563


                  ....*..
gi 1918264435 776 LINDGIS 782
Cdd:COG4796   564 IVKDALA 570
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 338-778 1.07e-175

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 510.70  E-value: 1.07e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 338 GERLSMEFQDVEIRSVLDILAQFTEMNIVASDSVSGNITLRLINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQ 417
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 418 EARELEAQQAVESFAPLRTEYIRLSYAKAQDVLTLISQGSGAssggnsgianrvddNNTLLSNRGTVTVDERTNTLIIKD 497
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGVTGG--------------SGGLLSPRGSVTVDPRTNTLIVTD 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 498 VAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNqtlwdlkdfdvettTVNG 577
Cdd:TIGR02515 147 TPENLARIRKLIAELDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGNGTAGGIGGN--------------NGTT 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 578 QTVSYPSYDITRPDNLNVDLGVANPAGSIAFGLLSM-SDVMLDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIP 656
Cdd:TIGR02515 213 ATGAGGTGNPPFGDNLNVNLATATTAAGISFALGKIgSGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIP 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 657 YQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVITNGTP----TIINNQVAIAEDSISTNVIVEDGQTVVLGGVF 732
Cdd:TIGR02515 293 YQQTSSSGATSVEFKEAVLSLEVTPQITPDGRIIMDLLVSKDSPgvvaQAGGGVPAIDKQEINTQVLVKNGETVVIGGIY 372

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1918264435 733 KNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLIN 778
Cdd:TIGR02515 373 EQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418
hofQ PRK13568
DNA uptake porin HofQ;
353-777 5.87e-110

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 340.17  E-value: 5.87e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 353 VLDILAQFTEMNIVASDSVSGNITLRLINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQEARELEAQQAVESFA 432
Cdd:PRK13568    1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQKTKQQAAPQEQML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 433 PLRTEYIRLSYAKAQDVLTLISqgsgassggnsgiANRvddnNTLLSNRGTVTVDERTNTLIIKDVAKSIENIHKLISKI 512
Cdd:PRK13568   81 PLANLTLTLQYADAEEVADSLQ-------------SQR----GGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIEL 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 513 DIPVRQVMIEARIVSATDSFSKEIGVRWGiLSNGAANNRNLlvggsnqtlwdlkdfdvetttvngqtvsypsyditRPDN 592
Cdd:PRK13568  144 DLPLQQVQLAAHIVTISSESLQELGVRWG-MGEGKQGNTAL-----------------------------------RIND 187

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 593 LNVDLGVANPAGSIAFGLLSMSDVMLDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEAS-ASGATTTSFK 671
Cdd:PRK13568  188 FNVNLPLPNPAASAGFHLARLGGRLLDLELSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPYTVSSgKSGSTSIEFK 267

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 672 EAALSLEATPNITPDGKIGLQLVITNGTPTIINNQ-----VAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFL 746
Cdd:PRK13568  268 EAVLGMEVTPKILRNGRITLKLKISQNMPGRTIKRgegemLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLL 347

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1918264435 747 GDLPYIGRAFRRDVRSNNKEELLIFVTPKLI 777
Cdd:PRK13568  348 GDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
Secretin pfam00263
Bacterial type II and III secretion system protein;
624-777 7.95e-46

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 161.15  E-value: 7.95e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 624 ALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEASASGATTTS---FKEAALSLEATPNITPDGKIGLQLVITNGTP 700
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTTtveFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1918264435 701 --TIINNQVAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLI 777
Cdd:pfam00263  81 dgNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPRIV 159
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 363-411 6.20e-05

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 40.95  E-value: 6.20e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1918264435  363 MNIVASDS-VSG-NITLRLINVPWDQALDIILKSKNLG-KRENGNVILVAPA 411
Cdd:smart00965   1 LNFVYDPAlVAGrRVSLLLGNVTVEQALDRLLAGTGLTyRRIGGNTIVLSPA 52
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 64-133 9.86e-03

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


Pssm-ID: 463338  Cd Length: 96  Bit Score: 36.13  E-value: 9.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1918264435  64 PVLPAAYQLDDPSRLVLDFEQVQNGLASRFNEYNVGVVNDVT-TLSSDSTTRLIIGLKQSGNYTTAIEGND 133
Cdd:pfam11741  19 GEKYQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGIKSVRvGQFDPNTVRVVVDLDGSVLPQVPVFKSG 89
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 223-782 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 690.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 223 GLSAVNFAAGNNGGGNVSIALANEAIPVDVQRQGNKLVVRLTGSTVPRNLLRRLNIN--SGLVSSIDTKNQGQNGVITIN 300
Cdd:COG4796    41 AIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQQGGKLVVDFLNTSLPEELRRRLDVTdfATPVQSIDAFQQGDNVRLVIE 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 301 MVDDYEYQAYQSGNQLNISIN--KPELLREPTLEEKVYSGERLSMEFQDVEIRSVLDILAQFTEMNIVASDSVSGNITLR 378
Cdd:COG4796   121 PRGDWEYSAYQTDNQFVVEVKplTEDENKLAQGGKKGYTGEKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 379 LINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQEARELEAQQAVESFAPLRTEYIRLSYAKAQDVLTLISqgsg 458
Cdd:COG4796   201 LKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKLELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLK---- 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 459 assggnsgianrvDDNNTLLSNRGTVTVDERTNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGV 538
Cdd:COG4796   277 -------------GQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGV 343

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 539 RWGILSNGAANNRNLLVGGSnqtlwdlkdfdvetttvngqTVSYPSYDITRPDNLNVDLGVANPAGSIAFGLLSMSD-VM 617
Cdd:COG4796   344 RWGGSGANGTGNNRGGIGGS--------------------LNGTTAGTPLLPDGLNVNLPAANPAGSLGLTLAKLGGgRL 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 618 LDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVITN 697
Cdd:COG4796   404 LDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLDVSK 483

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 698 GTP--TIINNQVAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPK 775
Cdd:COG4796   484 DSPgeTVAGGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPR 563


                  ....*..
gi 1918264435 776 LINDGIS 782
Cdd:COG4796   564 IVKDALA 570
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 338-778 1.07e-175

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 510.70  E-value: 1.07e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 338 GERLSMEFQDVEIRSVLDILAQFTEMNIVASDSVSGNITLRLINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQ 417
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 418 EARELEAQQAVESFAPLRTEYIRLSYAKAQDVLTLISQGSGAssggnsgianrvddNNTLLSNRGTVTVDERTNTLIIKD 497
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGVTGG--------------SGGLLSPRGSVTVDPRTNTLIVTD 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 498 VAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNqtlwdlkdfdvettTVNG 577
Cdd:TIGR02515 147 TPENLARIRKLIAELDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGNGTAGGIGGN--------------NGTT 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 578 QTVSYPSYDITRPDNLNVDLGVANPAGSIAFGLLSM-SDVMLDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIP 656
Cdd:TIGR02515 213 ATGAGGTGNPPFGDNLNVNLATATTAAGISFALGKIgSGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIP 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 657 YQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVITNGTP----TIINNQVAIAEDSISTNVIVEDGQTVVLGGVF 732
Cdd:TIGR02515 293 YQQTSSSGATSVEFKEAVLSLEVTPQITPDGRIIMDLLVSKDSPgvvaQAGGGVPAIDKQEINTQVLVKNGETVVIGGIY 372

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1918264435 733 KNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLIN 778
Cdd:TIGR02515 373 EQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418
hofQ PRK13568
DNA uptake porin HofQ;
353-777 5.87e-110

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 340.17  E-value: 5.87e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 353 VLDILAQFTEMNIVASDSVSGNITLRLINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQEARELEAQQAVESFA 432
Cdd:PRK13568    1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQKTKQQAAPQEQML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 433 PLRTEYIRLSYAKAQDVLTLISqgsgassggnsgiANRvddnNTLLSNRGTVTVDERTNTLIIKDVAKSIENIHKLISKI 512
Cdd:PRK13568   81 PLANLTLTLQYADAEEVADSLQ-------------SQR----GGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIEL 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 513 DIPVRQVMIEARIVSATDSFSKEIGVRWGiLSNGAANNRNLlvggsnqtlwdlkdfdvetttvngqtvsypsyditRPDN 592
Cdd:PRK13568  144 DLPLQQVQLAAHIVTISSESLQELGVRWG-MGEGKQGNTAL-----------------------------------RIND 187

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 593 LNVDLGVANPAGSIAFGLLSMSDVMLDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEAS-ASGATTTSFK 671
Cdd:PRK13568  188 FNVNLPLPNPAASAGFHLARLGGRLLDLELSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPYTVSSgKSGSTSIEFK 267

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 672 EAALSLEATPNITPDGKIGLQLVITNGTPTIINNQ-----VAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFL 746
Cdd:PRK13568  268 EAVLGMEVTPKILRNGRITLKLKISQNMPGRTIKRgegemLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLL 347

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1918264435 747 GDLPYIGRAFRRDVRSNNKEELLIFVTPKLI 777
Cdd:PRK13568  348 GDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
hofQ PRK10560
outer membrane porin HofQ; Provisional
 347-778 2.06e-80

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 262.83  E-value: 2.06e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 347 DVEIRSVLDILAQFTEMNIVASDSVSGNITLRLINVPWDQALDIILKSKNLGKRENGNVILVAPATELAEQEARELEAQQ 426
Cdd:PRK10560    4 DVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEAEQA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 427 AVESFAPLRTEYIRLSYAKAQDVltlisqgsgassggnsgianrVDDNNTLLSNRGTVTVDERTNTLIIKDVAKSIENIH 506
Cdd:PRK10560   84 RAQANLPLENRSITLQYADAGEL---------------------AKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 507 KLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWGILsngaannrnllvggsnqtlwdlkdfDVETTTVNGQtvsypsyd 586
Cdd:PRK10560  143 QWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLA-------------------------DAQQAGGVGQ-------- 189

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 587 itrPDNLNVDLGVANPAGSIAFGLLSMSDVMLDLELSALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEASA-SGA 665
Cdd:PRK10560  190 ---VTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGA 266

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 666 TTTSFKEAALSLEATPNITPDGKIGLQLVITNGTPTIINNQ-----VAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGV 740
Cdd:PRK10560  267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQadgevLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQ 346

                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1918264435 741 DKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLIN 778
Cdd:PRK10560  347 DSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVS 384
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 479-780 2.90e-57

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 198.99  E-value: 2.90e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 479 SNRGTVTVDERTNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWGILSNGAAnnrnllvggs 558
Cdd:COG1450    41 AAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGNGG---------- 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 559 nqtlwdlkdfdvetttvngqtvsypSYDITRPDNLNVDLGVANPAGSIAFGLLSMSDvmLDLELSALQADNRGEVISTPK 638
Cdd:COG1450   111 -------------------------GVNFGGTGSLGSLAAAGSLGGGLNLGLLGGGN--FGALLNALESNGDANVLSSPS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 639 ILTADKQTAKVSSGTQIPYQEASASGATTTS------FKEAALSLEATPNITPDGKIGLQLV-----ITNGTPTIINNQV 707
Cdd:COG1450   164 ILTLNNQEAVIKVGQTVPYVTGSTTTSSTGNptttieYVDVGITLKVTPQINEDGTVTLDINpevssVTGSTTGGGNGLP 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1918264435 708 AIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLINDG 780
Cdd:COG1450   244 TINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDG 316
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 401-782 1.70e-48

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 181.05  E-value: 1.70e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 401 ENGNVILVAPATELAEQEARELEAQQAVESFAPLRTEYIRLSYAKAQDV---LTLISQGSGASSGGNSGIANRVDDNNTL 477
Cdd:TIGR02517 201 DRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRVYYLRNADAEELaktLQGVFGGGGNEPGSSSSPGLGGAVNPGG 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 478 LSN----------RGTVTVDERTNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWGILSNGA 547
Cdd:TIGR02517 281 SQSaqaassasggSVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTGG 360

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 548 ANNRNLLVGGSNQTLWDLKDFDVETTTVNGQTVSypsyditrpdNLNVDLGVANPAGSIAFGLLsmsdvmldleLSALQA 627
Cdd:TIGR02517 361 GVNFSTGSPNSGSLLGASASAISLGSAGIGLLVT----------SSSTTSGVGGTGGGPNLGVL----------LNALKQ 420

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 628 DNRGEVISTPKILTADKQTAKVSSGTQIPYQEASASGATTTS---------FKEAALSLEATPNITPDGKIGLQLV--IT 696
Cdd:TIGR02517 421 DTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTnanpfntyqRKDVGIKLKVTPQINEGGTVRLEIYqeVS 500

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 697 NGTPTIINNQVA---IAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVT 773
Cdd:TIGR02517 501 SVAPTTVGSAASgptFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFIT 580


                  ....*....
gi 1918264435 774 PKLINDGIS 782
Cdd:TIGR02517 581 PRIIRDPED 589
Secretin pfam00263
Bacterial type II and III secretion system protein;
624-777 7.95e-46

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 161.15  E-value: 7.95e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 624 ALQADNRGEVISTPKILTADKQTAKVSSGTQIPYQEASASGATTTS---FKEAALSLEATPNITPDGKIGLQLVITNGTP 700
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTTtveFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1918264435 701 --TIINNQVAIAEDSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLI 777
Cdd:pfam00263  81 dgNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPRIV 159
IV PHA00019
phage assembly protein
 336-778 5.87e-45

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 167.30  E-value: 5.87e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 336 YSGERLSMEFQDVEIRSVLDILAQFTEMNIVASDSVSGNITLR---LINVPWDQALDIILKSKNLGKRENGN--VILVAP 410
Cdd:PHA00019   19 FSSFALPVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYsadVNPANLPQFFDSVLRANGFDLVAGGPavVIKQNP 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 411 ATELAEQEARELEAQQAVESFAP---------LRTEYIRLSYAKAQDVLTLISQGsgassggnsgianrVDDNNtllSNR 481
Cdd:PHA00019   99 NQEDYADDLRDSRDDVFYDNSVPsgapevpndLIVRTFNINNVRASDLLPLVKIF--------------VKSNG---APG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 482 GTVTVDERTNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWGILSNGAannrnlLVGGSNQt 561
Cdd:PHA00019  162 GSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDGVDLSFAAGLASGGK------VAGGFNT- 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 562 lwdlkdfdvetttvngqtvsypsyditrpDNLNVDLGVAnpagSIAFGLLSMSDvmLDLELSALQADNRGEVISTPKILT 641
Cdd:PHA00019  235 -----------------------------ARLTTVLSSA----GGSFGIFNGNV--LGLSVKALENSSNSRVLSRPRILT 279

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 642 ADKQTAKVSSGTQIPY--------QEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVITNGTPT--IINNQVAIAE 711
Cdd:PHA00019  280 LSGQSGYISVGQNVPFvtgrvtgeAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSdsTIASDIITNQ 359

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1918264435 712 DSISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLIN 778
Cdd:PHA00019  360 RSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 495-777 3.12e-28

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 118.82  E-value: 3.12e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 495 IKDVAKSIENIHKLISKIDIP-VRQVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNqtlwdlkdfdvett 573
Cdd:COG4964   152 AVDLAEAYAGGGKVINLLTVGgPQQVMLKVRVAEVSRSVLKQLGINWSGLGSSGGFSFGLLTGGLL-------------- 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 574 tvngqtvsypsyditrpdnlnvdLGVANPAGSIAFGLLSMSDVMLDLELSALQADNRGEVISTPKILTADKQTAKVSSGT 653
Cdd:COG4964   218 -----------------------SGLLGGATAGAFSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAGG 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 654 QIPYQEASASGATTTSFKEAALSLEATPNITPDGKIGLQL------VITNGTPTIINNQV-AIAEDSISTNVIVEDGQTV 726
Cdd:COG4964   275 EFPIPVAQGDGTITVEYKEFGVSLNFTPTVLSNGRISLKVapevseLDPSNAVTLNGITIpGLTTRRAETTVELRSGQSF 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1918264435 727 VLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLI 777
Cdd:COG4964   355 AIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLV 405
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 484-777 8.07e-21

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 93.60  E-value: 8.07e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 484 VTVDERTNTLIIKDVAKSIENIHKLISKI-DIPVRQVMIEARIVSATDSFSKEIGVRWGILSNGAANNrnllVGGSNqtl 562
Cdd:TIGR02519   1 YIINPEAGLLTVTATPAQIRRVEEYLESLqERIHRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLAR----YKALG--- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 563 wdlkdfdvettTVNGQTVSypsyDITRPDNLNVDLGVANPAGSIafgllsmSDVMLDLELSALQADNRGEVISTPKILTA 642
Cdd:TIGR02519  74 -----------AANSNDSS----GNQFSSGLGFLDNIGLPTGVN-------SGFGFDSIINFLATFGDTKVLSNPKVMAL 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 643 DKQTAKVSSGTQIPYQEASAS-----GATTTSFKE-------AALSLEATPNITPDGKIGLQL--VITNGTPTIIN---- 704
Cdd:TIGR02519 132 NNQPAVISVGDNIRYVTEESStgttgGTTSTASSDtrvdsvfSGIVLGVTPQISDDGKVILNVhpSISEVKPQSIDlnpv 211

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1918264435 705 ---NQVAIAEDSI---STNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLI 777
Cdd:TIGR02519 212 gngAEVALPEISVkemSSVLRVKDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
487-761 1.47e-09

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 61.25  E-value: 1.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 487 DERTNTLIIKDVAKSIENIHKLISKIDIpvRQVMIEARI----VSATDSfsKEIGVRWGilsnGAANnrnllvggsnqtl 562
Cdd:PRK15346  241 DPRQNAVIVRDRAANMAIYRSLITQLDQ--RPQMIEISVsiidVDAGDI--NQLGIDWS----ASAS------------- 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 563 wdlkdfdvetttVNGQTVSYpsyditrpdnlNVDLGVANpAGSIAFGLLSMSDVMLdlELSALQADNRGEVISTPKILTA 642
Cdd:PRK15346  300 ------------LGGGKISF-----------NSGFADGN-ASGFSTVISNTGNFMV--RLNALEKNSKAKILSQPSVVTL 353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 643 DKQTA----------KVSsGTQIPYQEASASGATttsfkeaalsLEATPNITPDG---KIGLQLVITNGTPTIINN---- 705
Cdd:PRK15346  354 NNIQAvldknvtfytKLQ-GEKVAKLESITTGSL----------LRVTPRLIDDNgtqKVMLNLNIQDGQQSATQSetdp 422

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1918264435 706 --QVAIAEdsISTNVIVEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVR 761
Cdd:PRK15346  423 lpEVQNSE--IATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDK 478
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 436-518 2.18e-09

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 54.14  E-value: 2.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 436 TEYIRLSYAKAQDVLTLIsqgsgassggnsgiaNRVDDNNTLLSNRGTVTVDERTNTLIIKDVAKSIENIHKLISKIDIP 515
Cdd:pfam03958   1 TRVIPLKYASAEDLASAL---------------RSLLGGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVP 65


                  ...
gi 1918264435 516 VRQ 518
Cdd:pfam03958  66 RAQ 68
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
490-779 2.23e-06

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 50.92  E-value: 2.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 490 TNTLIIKDVAKSIENIHKLISKIDIPVRQVMIEARIVSATDSFSKEIGVRWgilsNGAANNRNLLVGGSNQTlwdlkdfd 569
Cdd:PRK15339  274 TNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNW----SGSITIGDKLGVSLNQS-------- 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 570 vetttvngqtvSYPSYDITRpdnlnvdlgvanpagsiafgllSMSDVMldlelsALQADNRGEVISTPKILTADKQTAkV 649
Cdd:PRK15339  342 -----------SISTLDGSR----------------------FIAAVM------ALEQKKKANVVSRPVVLTQENIPA-I 381

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 650 SSGTQIPYqeASASGATTTSFKEAALS--LEATPNITPDGKIGLQLVITNGTPTIINNQVAIAEDS--------ISTNVI 719
Cdd:PRK15339  382 FDNNRTFY--TKLVGERNVALEHVTYGtmISVLPRFSADGQIEMSLDIEDGNEKTPQSDTTTSVDAlpevgrtlISTIAR 459

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1918264435 720 VEDGQTVVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRRDVRSNNKEELLIFVTPKLIND 779
Cdd:PRK15339  460 VPQGKSLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFLIEPREIVE 519
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 363-411 6.20e-05

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 40.95  E-value: 6.20e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1918264435  363 MNIVASDS-VSG-NITLRLINVPWDQALDIILKSKNLG-KRENGNVILVAPA 411
Cdd:smart00965   1 LNFVYDPAlVAGrRVSLLLGNVTVEQALDRLLAGTGLTyRRIGGNTIVLSPA 52
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 365-411 2.75e-04

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 39.42  E-value: 2.75e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1918264435 365 IVASDSVSGN--ITLRLINVPWDQALDIILKSKNLGKRENGNVILVAPA 411
Cdd:pfam07660   3 LYDSDLVDGKqsVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 64-133 9.86e-03

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


Pssm-ID: 463338  Cd Length: 96  Bit Score: 36.13  E-value: 9.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1918264435  64 PVLPAAYQLDDPSRLVLDFEQVQNGLASRFNEYNVGVVNDVT-TLSSDSTTRLIIGLKQSGNYTTAIEGND 133
Cdd:pfam11741  19 GEKYQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGIKSVRvGQFDPNTVRVVVDLDGSVLPQVPVFKSG 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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