NCBI Conserved Domain Search

Conserved domains on [gi|1934364946|ref|WP_195568454|]

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zinc-ribbon domain-containing protein [Collinsella aerofaciens]

Protein Classification

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

YvbJ super family

cl26236

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];

3-50

2.44e-06

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];

The actual alignment was detected with superfamily member COG4640:

Pssm-ID: 443678 [Multi-domain] Cd Length: 445 Bit Score: 48.61 E-value: 2.44e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1934364946   3 RYCAACGKLLADNAKFCTSCGAPVEQTTASDSQPAFEQTGSLDTPQAK 50
Cdd:COG4640     2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAQSAVSNTAV 49

Name

Accession

Description

Interval

E-value

YvbJ

COG4640

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];

3-50

2.44e-06

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];

Pssm-ID: 443678 [Multi-domain] Cd Length: 445 Bit Score: 48.61 E-value: 2.44e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1934364946   3 RYCAACGKLLADNAKFCTSCGAPVEQTTASDSQPAFEQTGSLDTPQAK 50
Cdd:COG4640     2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAQSAVSNTAV 49

zinc_ribbon_2

pfam13240

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...

4-24

6.77e-05

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.

Pssm-ID: 433054 [Multi-domain] Cd Length: 21 Bit Score: 39.41 E-value: 6.77e-05

                          10        20
                  ....*....|....*....|.
gi 1934364946   4 YCAACGKLLADNAKFCTSCGA 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21

Name

Accession

Description

Interval

E-value

YvbJ

COG4640

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];

3-50

2.44e-06

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];

Pssm-ID: 443678 [Multi-domain] Cd Length: 445 Bit Score: 48.61 E-value: 2.44e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1934364946   3 RYCAACGKLLADNAKFCTSCGAPVEQTTASDSQPAFEQTGSLDTPQAK 50
Cdd:COG4640     2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAQSAVSNTAV 49

zinc_ribbon_2

pfam13240

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...

4-24

6.77e-05

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.

Pssm-ID: 433054 [Multi-domain] Cd Length: 21 Bit Score: 39.41 E-value: 6.77e-05

                          10        20
                  ....*....|....*....|.
gi 1934364946   4 YCAACGKLLADNAKFCTSCGA 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21

zf-ribbon_3

pfam13248

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...

3-25

5.46e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.

Pssm-ID: 404185 [Multi-domain] Cd Length: 25 Bit Score: 33.71 E-value: 5.46e-03

                          10        20
                  ....*....|....*....|...
gi 1934364946   3 RYCAACGKLLADNAKFCTSCGAP 25
Cdd:pfam13248   2 VRCPNCGAPVSPDDNVCPYCGTK 24

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01